Wall clock time and date at job start Mon Mar 30 2020 02:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.49959 * 2 1 4 4 C 1.53040 * 109.52567 * 239.91768 * 2 1 3 5 5 C 1.53080 * 109.65611 * 178.73374 * 4 2 1 6 6 H 1.09002 * 109.38927 * 301.27278 * 5 4 2 7 7 C 1.52996 * 109.61868 * 181.16948 * 5 4 2 8 8 O 1.42899 * 109.47081 * 175.10658 * 7 5 4 9 9 C 1.53185 * 109.29449 * 61.15481 * 5 4 2 10 10 N 1.46926 * 108.89609 * 305.57321 * 9 5 4 11 11 C 1.36930 * 120.63383 * 233.56420 * 10 9 5 12 12 H 1.08001 * 120.00048 * 151.82243 * 11 10 9 13 13 C 1.38810 * 119.99962 * 331.81955 * 11 10 9 14 14 N 1.31613 * 120.00273 * 343.07970 * 13 11 10 15 15 Si 1.86803 * 119.99828 * 163.07261 * 13 11 10 16 16 H 1.48498 * 109.47234 * 90.00142 * 15 13 11 17 17 H 1.48503 * 109.47064 * 210.00127 * 15 13 11 18 18 H 1.48502 * 109.47357 * 330.00436 * 15 13 11 19 19 C 1.46928 * 118.73428 * 53.53798 * 10 9 5 20 20 H 1.08998 * 109.47168 * 299.93709 * 1 2 3 21 21 H 1.08998 * 109.47024 * 59.93753 * 1 2 3 22 22 H 1.09004 * 109.47012 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.45890 * 298.68608 * 4 2 1 24 24 H 1.09000 * 109.45953 * 58.65987 * 4 2 1 25 25 H 1.08998 * 109.47454 * 295.10726 * 7 5 4 26 26 H 1.09005 * 109.47435 * 55.10642 * 7 5 4 27 27 H 0.96707 * 114.00315 * 180.02562 * 8 7 5 28 28 H 1.09000 * 109.58442 * 185.71851 * 9 5 4 29 29 H 1.09001 * 109.58949 * 65.43473 * 9 5 4 30 30 H 0.96997 * 120.00271 * 180.02562 * 14 13 11 31 31 H 1.09006 * 109.58577 * 66.18627 * 19 10 9 32 32 H 1.09002 * 109.58869 * 186.45857 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0415 -0.7230 -1.2481 5 6 3.5720 -0.6972 -1.2672 6 1 3.9167 0.3368 -1.2579 7 6 4.0818 -1.3947 -2.5299 8 8 5.5035 -1.2696 -2.6022 9 6 4.1060 -1.4255 -0.0298 10 7 3.5047 -0.8281 1.1703 11 6 4.2932 -0.3770 2.1949 12 1 3.9489 0.4283 2.8270 13 6 5.5349 -0.9547 2.4213 14 7 5.8219 -2.1258 1.8938 15 14 6.7986 -0.0697 3.4745 16 1 6.6293 -0.4722 4.8939 17 1 8.1645 -0.4310 3.0171 18 1 6.6068 1.3976 3.3500 19 6 2.0413 -0.7234 1.2498 20 1 -0.3633 0.5128 0.8905 21 1 -0.3633 0.5148 -0.8894 22 1 -0.3633 -1.0277 -0.0005 23 1 1.6979 -1.7574 -1.2350 24 1 1.6591 -0.2245 -2.1388 25 1 3.8112 -2.4500 -2.4965 26 1 3.6312 -0.9317 -3.4079 27 1 5.8963 -1.6893 -3.3798 28 1 5.1902 -1.3229 0.0150 29 1 3.8408 -2.4814 -0.0844 30 1 6.6894 -2.5297 2.0523 31 1 1.6057 -1.7215 1.2983 32 1 1.7631 -0.1598 2.1404 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307002726.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:28 Heat of formation + Delta-G solvation = -70.722655 kcal Electronic energy + Delta-G solvation = -13526.343990 eV Core-core repulsion = 11292.783257 eV Total energy + Delta-G solvation = -2233.560733 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.80340 -37.46253 -35.43671 -33.27445 -32.49369 -27.39940 -27.19097 -26.51739 -23.41124 -21.49754 -20.63003 -18.68301 -18.17925 -16.92552 -15.98491 -15.91170 -15.43626 -14.93717 -14.74250 -14.33101 -14.02218 -13.40927 -13.10937 -12.95095 -12.76571 -12.57274 -12.42978 -12.13941 -11.87831 -11.74787 -11.46653 -11.16536 -11.03599 -10.77298 -10.51527 -8.67241 -7.87333 -5.33809 1.42869 1.45666 1.55296 2.49884 3.26108 3.42222 3.71483 4.06632 4.09110 4.20045 4.29985 4.43200 4.70058 4.74772 4.81410 4.84225 4.86585 4.92068 5.06406 5.11484 5.20553 5.40840 5.46045 5.52613 5.59119 5.70471 5.82940 6.39839 7.03757 7.14523 7.87274 8.38608 9.18287 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.029245 B = 0.013789 C = 0.010114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.210896 B = 2030.188852 C = 2767.808795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.103 4.103 3 H 0.055 0.945 4 C -0.089 4.089 5 C -0.111 4.111 6 H 0.048 0.952 7 C 0.090 3.910 8 O -0.594 6.594 9 C 0.193 3.807 10 N -0.616 5.616 11 C -0.270 4.270 12 H 0.064 0.936 13 C -0.052 4.052 14 N -0.933 5.933 15 Si 0.968 3.032 16 H -0.280 1.280 17 H -0.292 1.292 18 H -0.271 1.271 19 C 0.145 3.855 20 H 0.056 0.944 21 H 0.071 0.929 22 H 0.056 0.944 23 H 0.058 0.942 24 H 0.083 0.917 25 H 0.046 0.954 26 H 0.071 0.929 27 H 0.391 0.609 28 H 0.050 0.950 29 H -0.012 1.012 30 H 0.249 0.751 31 H 0.012 0.988 32 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.547 2.568 -9.002 12.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.123 4.123 3 H 0.073 0.927 4 C -0.127 4.127 5 C -0.131 4.131 6 H 0.067 0.933 7 C 0.013 3.987 8 O -0.402 6.402 9 C 0.068 3.932 10 N -0.339 5.339 11 C -0.400 4.400 12 H 0.082 0.918 13 C -0.247 4.247 14 N -0.578 5.578 15 Si 0.795 3.205 16 H -0.206 1.206 17 H -0.218 1.218 18 H -0.196 1.196 19 C 0.020 3.980 20 H 0.075 0.925 21 H 0.090 0.910 22 H 0.076 0.924 23 H 0.077 0.923 24 H 0.101 0.899 25 H 0.064 0.936 26 H 0.089 0.911 27 H 0.240 0.760 28 H 0.068 0.932 29 H 0.006 0.994 30 H 0.058 0.942 31 H 0.030 0.970 32 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.510 2.800 -8.404 11.613 hybrid contribution 1.117 -0.265 0.292 1.185 sum -6.393 2.535 -8.112 10.635 Atomic orbital electron populations 1.21689 0.92805 1.02125 1.02352 1.21517 0.96660 0.98876 0.95281 0.92656 1.21398 0.92578 1.00615 0.98090 1.21737 0.96833 0.99365 0.95207 0.93327 1.22175 0.80621 0.99013 0.96938 1.86578 1.21669 1.81117 1.50858 1.20460 0.97437 0.91482 0.83847 1.44388 1.01227 1.71701 1.16540 1.19504 0.99503 1.11874 1.09125 0.91813 1.25849 1.01758 0.96090 1.01012 1.70193 1.22126 1.16031 1.49471 0.85282 0.78269 0.78590 0.78360 1.20645 1.21809 1.19591 1.21150 0.83564 0.96646 0.96654 0.92452 0.90980 0.92442 0.92277 0.89898 0.93608 0.91085 0.75962 0.93183 0.99437 0.94185 0.97045 0.93376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.33 9.20 71.98 0.66 -2.66 16 2 C -0.10 -3.54 2.87 -10.71 -0.03 -3.57 16 3 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 4 C -0.09 -2.89 4.45 30.63 0.14 -2.76 16 5 C -0.11 -4.46 2.58 -10.71 -0.03 -4.49 16 6 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 7 C 0.09 2.93 6.44 71.98 0.46 3.39 16 8 O -0.59 -21.09 13.30 -148.98 -1.98 -23.07 16 9 C 0.19 10.13 4.42 86.36 0.38 10.51 16 10 N -0.62 -33.39 3.00 -699.10 -2.09 -35.48 16 11 C -0.27 -15.93 9.58 84.03 0.81 -15.12 16 12 H 0.06 3.65 7.89 -2.91 -0.02 3.63 16 13 C -0.05 -3.07 4.92 84.86 0.42 -2.65 16 14 N -0.93 -58.64 11.20 21.65 0.24 -58.40 16 15 Si 0.97 47.38 29.59 68.60 2.03 49.41 16 16 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 17 H -0.29 -14.28 7.11 99.48 0.71 -13.58 16 18 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 19 C 0.15 6.38 5.80 86.36 0.50 6.88 16 20 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 21 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 22 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 23 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 24 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 25 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 27 H 0.39 9.02 9.12 -74.05 -0.68 8.35 16 28 H 0.05 3.04 5.90 -2.39 -0.01 3.03 16 29 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 30 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 31 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 32 H 0.05 2.09 7.93 -2.39 -0.02 2.07 16 Total: -1.00 -71.49 257.38 1.91 -69.58 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: 0.41 Total: 8.43 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: 3.31 Total: -10.47 kcal Atomic # 7 Polarization: -92.02 SS G_CDS: -1.85 Total: -93.88 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: -1.98 Total: -23.07 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 2.03 Total: 49.41 kcal Total: -71.49 1.91 -69.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307002726.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.146 kcal (2) G-P(sol) polarization free energy of solvation -71.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds