Wall clock time and date at job start Mon Mar 30 2020 02:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.49832 * 2 1 4 4 C 1.53044 * 109.49544 * 120.09039 * 2 1 3 5 5 C 1.53038 * 109.53786 * 181.31550 * 4 2 1 6 6 H 1.09000 * 109.49722 * 58.58939 * 5 4 2 7 7 C 1.52999 * 109.52827 * 178.66782 * 5 4 2 8 8 O 1.42895 * 109.47645 * 184.92069 * 7 5 4 9 9 C 1.53193 * 109.31741 * 298.63959 * 5 4 2 10 10 N 1.46923 * 108.77347 * 54.63233 * 9 5 4 11 11 C 1.36934 * 120.63183 * 126.41877 * 10 9 5 12 12 H 1.07998 * 120.00535 * 207.67312 * 11 10 9 13 13 C 1.38816 * 119.99889 * 27.67188 * 11 10 9 14 14 N 1.31619 * 120.00268 * 17.35896 * 13 11 10 15 15 Si 1.86800 * 119.99896 * 197.35827 * 13 11 10 16 16 H 1.48504 * 109.47308 * 59.99783 * 15 13 11 17 17 H 1.48498 * 109.47081 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.47141 * 300.00028 * 15 13 11 19 19 C 1.46930 * 118.73976 * 306.39324 * 10 9 5 20 20 H 1.09005 * 109.46650 * 180.02562 * 1 2 3 21 21 H 1.08996 * 109.47031 * 300.06875 * 1 2 3 22 22 H 1.09000 * 109.46748 * 60.07370 * 1 2 3 23 23 H 1.09005 * 109.45925 * 61.30290 * 4 2 1 24 24 H 1.08999 * 109.46610 * 301.33971 * 4 2 1 25 25 H 1.09005 * 109.47207 * 304.92827 * 7 5 4 26 26 H 1.09006 * 109.46741 * 64.92090 * 7 5 4 27 27 H 0.96698 * 114.00293 * 180.02562 * 8 7 5 28 28 H 1.08998 * 109.58854 * 174.42337 * 9 5 4 29 29 H 1.08997 * 109.58588 * 294.70229 * 9 5 4 30 30 H 0.96997 * 120.00063 * 180.02562 * 14 13 11 31 31 H 1.09000 * 109.58608 * 173.39944 * 19 10 9 32 32 H 1.09001 * 109.58656 * 293.82247 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0408 -0.7233 1.2483 5 6 3.5708 -0.6953 1.2660 6 1 3.9159 0.3386 1.2543 7 6 4.0804 -1.3894 2.5306 8 8 5.5019 -1.2626 2.6038 9 6 4.1054 -1.4267 0.0306 10 7 3.5047 -0.8288 -1.1696 11 6 4.2936 -0.3788 -2.1944 12 1 3.9469 0.4212 -2.8317 13 6 5.5392 -0.9509 -2.4141 14 7 5.8280 -2.1217 -1.8866 15 14 6.8055 -0.0591 -3.4585 16 1 7.1181 1.2555 -2.8424 17 1 8.0434 -0.8752 -3.5397 18 1 6.2613 0.1512 -4.8241 19 6 2.0414 -0.7235 -1.2497 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5149 0.8893 22 1 -0.3633 0.5127 -0.8907 23 1 1.6967 -1.7576 1.2350 24 1 1.6581 -0.2250 2.1390 25 1 3.6286 -0.9250 3.4072 26 1 3.8109 -2.4451 2.4993 27 1 5.8945 -1.6809 3.3822 28 1 5.1896 -1.3246 -0.0138 29 1 3.8398 -2.4823 0.0876 30 1 6.6985 -2.5212 -2.0399 31 1 1.7639 -0.1575 -2.1389 32 1 1.6053 -1.7213 -1.2983 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307002727.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:30 Heat of formation + Delta-G solvation = -47.215901 kcal Electronic energy + Delta-G solvation = -13527.194976 eV Core-core repulsion = 11294.653573 eV Total energy + Delta-G solvation = -2232.541404 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.16244 -36.01097 -33.53378 -31.71411 -30.45506 -25.83136 -25.22514 -25.00987 -21.50712 -19.96205 -18.97276 -16.82475 -16.57055 -14.98080 -14.30751 -14.26946 -13.68214 -13.35580 -13.26158 -12.58390 -12.17644 -11.95752 -11.76429 -11.20147 -10.95174 -10.83036 -10.56454 -10.31931 -10.14043 -10.07042 -9.79740 -9.48636 -9.44502 -9.20069 -8.34225 -6.56435 -5.67986 -3.10266 3.45448 3.50895 3.52764 4.58177 4.71627 5.35544 5.46596 5.53314 5.57202 5.63036 5.74756 5.75655 6.01436 6.16132 6.24403 6.26721 6.33756 6.47163 6.51347 6.64973 6.79641 6.92102 6.99576 7.11845 7.53459 7.83135 7.93898 8.12138 8.57200 9.31960 9.96305 10.52972 11.40145 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.029251 B = 0.013802 C = 0.010126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.001900 B = 2028.245891 C = 2764.494223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 H 0.065 0.935 4 C -0.095 4.095 5 C -0.116 4.116 6 H 0.068 0.932 7 C 0.088 3.912 8 O -0.564 6.564 9 C 0.183 3.817 10 N -0.594 5.594 11 C -0.256 4.256 12 H 0.064 0.936 13 C 0.004 3.996 14 N -0.900 5.900 15 Si 0.902 3.098 16 H -0.284 1.284 17 H -0.291 1.291 18 H -0.283 1.283 19 C 0.151 3.849 20 H 0.050 0.950 21 H 0.045 0.955 22 H 0.050 0.950 23 H 0.054 0.946 24 H 0.044 0.956 25 H 0.031 0.969 26 H 0.039 0.961 27 H 0.367 0.633 28 H 0.095 0.905 29 H 0.013 0.987 30 H 0.254 0.746 31 H 0.051 0.949 32 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.226 1.638 7.806 10.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.084 0.916 4 C -0.133 4.133 5 C -0.136 4.136 6 H 0.087 0.913 7 C 0.009 3.991 8 O -0.367 6.367 9 C 0.057 3.943 10 N -0.315 5.315 11 C -0.385 4.385 12 H 0.082 0.918 13 C -0.195 4.195 14 N -0.544 5.544 15 Si 0.732 3.268 16 H -0.210 1.210 17 H -0.216 1.216 18 H -0.210 1.210 19 C 0.024 3.976 20 H 0.069 0.931 21 H 0.064 0.936 22 H 0.069 0.931 23 H 0.073 0.927 24 H 0.063 0.937 25 H 0.049 0.951 26 H 0.058 0.942 27 H 0.212 0.788 28 H 0.113 0.887 29 H 0.031 0.969 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -6.161 1.855 7.180 9.641 hybrid contribution 0.719 0.063 0.095 0.728 sum -5.442 1.918 7.275 9.285 Atomic orbital electron populations 1.21765 0.96276 1.01130 1.00705 1.21630 0.93908 1.00245 0.97242 0.91631 1.21408 0.95109 0.99890 0.96889 1.21862 0.94502 1.01179 0.96070 0.91329 1.22194 0.80814 0.98690 0.97372 1.86635 1.20862 1.80518 1.48691 1.20739 0.99876 0.92114 0.81552 1.44074 0.99362 1.71579 1.16527 1.19123 0.98427 1.12364 1.08597 0.91849 1.25022 0.99830 0.95367 0.99273 1.70024 1.21852 1.14587 1.47904 0.86385 0.81156 0.79231 0.80077 1.21038 1.21650 1.20977 1.20947 0.85939 0.96349 0.94322 0.93117 0.93576 0.93059 0.92736 0.93722 0.95092 0.94246 0.78805 0.88731 0.96937 0.93646 0.93040 0.96635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.20 37.16 0.34 -1.69 16 2 C -0.11 -2.00 2.87 -90.50 -0.26 -2.26 16 3 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 4 C -0.10 -1.68 4.45 -26.69 -0.12 -1.80 16 5 C -0.12 -2.37 2.58 -90.50 -0.23 -2.60 16 6 H 0.07 1.52 8.14 -51.93 -0.42 1.09 16 7 C 0.09 1.51 6.43 37.16 0.24 1.75 16 8 O -0.56 -10.22 13.31 -35.23 -0.47 -10.69 16 9 C 0.18 4.66 4.43 -3.71 -0.02 4.64 16 10 N -0.59 -15.74 2.99 -172.32 -0.52 -16.26 16 11 C -0.26 -7.37 9.59 -15.06 -0.14 -7.51 16 12 H 0.06 1.78 7.89 -52.49 -0.41 1.37 16 13 C 0.00 0.11 4.91 -17.43 -0.09 0.03 16 14 N -0.90 -27.32 11.19 55.49 0.62 -26.69 16 15 Si 0.90 22.61 29.59 -169.99 -5.03 17.58 16 16 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 17 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 18 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 19 C 0.15 3.32 5.80 -3.71 -0.02 3.30 16 20 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 21 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 22 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 23 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 24 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.37 4.49 9.12 45.56 0.42 4.91 16 28 H 0.09 2.76 5.88 -51.93 -0.31 2.45 16 29 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.05 1.11 7.93 -51.93 -0.41 0.70 16 32 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 257.34 15.07 3.88 3.88 Total: -1.00 -32.08 257.34 -6.32 -38.40 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -4.50 Total: -0.07 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: -0.30 Total: -6.14 kcal Atomic # 7 Polarization: -43.06 SS G_CDS: 0.10 Total: -42.95 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: -0.47 Total: -10.69 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.03 Total: 17.58 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -32.08 -6.32 -38.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307002727.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.819 kcal (2) G-P(sol) polarization free energy of solvation -32.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds