Wall clock time and date at job start Mon Mar 30 2020 02:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.49832 * 2 1 4 4 C 1.53044 * 109.49544 * 120.09039 * 2 1 3 5 5 C 1.53038 * 109.53786 * 181.31550 * 4 2 1 6 6 H 1.09000 * 109.49722 * 58.58939 * 5 4 2 7 7 C 1.52999 * 109.52827 * 178.66782 * 5 4 2 8 8 O 1.42895 * 109.47645 * 184.92069 * 7 5 4 9 9 C 1.53193 * 109.31741 * 298.63959 * 5 4 2 10 10 N 1.46923 * 108.77347 * 54.63233 * 9 5 4 11 11 C 1.36934 * 120.63183 * 126.41877 * 10 9 5 12 12 H 1.07998 * 120.00535 * 207.67312 * 11 10 9 13 13 C 1.38816 * 119.99889 * 27.67188 * 11 10 9 14 14 N 1.31619 * 120.00268 * 17.35896 * 13 11 10 15 15 Si 1.86800 * 119.99896 * 197.35827 * 13 11 10 16 16 H 1.48504 * 109.47308 * 59.99783 * 15 13 11 17 17 H 1.48498 * 109.47081 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.47141 * 300.00028 * 15 13 11 19 19 C 1.46930 * 118.73976 * 306.39324 * 10 9 5 20 20 H 1.09005 * 109.46650 * 180.02562 * 1 2 3 21 21 H 1.08996 * 109.47031 * 300.06875 * 1 2 3 22 22 H 1.09000 * 109.46748 * 60.07370 * 1 2 3 23 23 H 1.09005 * 109.45925 * 61.30290 * 4 2 1 24 24 H 1.08999 * 109.46610 * 301.33971 * 4 2 1 25 25 H 1.09005 * 109.47207 * 304.92827 * 7 5 4 26 26 H 1.09006 * 109.46741 * 64.92090 * 7 5 4 27 27 H 0.96698 * 114.00293 * 180.02562 * 8 7 5 28 28 H 1.08998 * 109.58854 * 174.42337 * 9 5 4 29 29 H 1.08997 * 109.58588 * 294.70229 * 9 5 4 30 30 H 0.96997 * 120.00063 * 180.02562 * 14 13 11 31 31 H 1.09000 * 109.58608 * 173.39944 * 19 10 9 32 32 H 1.09001 * 109.58656 * 293.82247 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0408 -0.7233 1.2483 5 6 3.5708 -0.6953 1.2660 6 1 3.9159 0.3386 1.2543 7 6 4.0804 -1.3894 2.5306 8 8 5.5019 -1.2626 2.6038 9 6 4.1054 -1.4267 0.0306 10 7 3.5047 -0.8288 -1.1696 11 6 4.2936 -0.3788 -2.1944 12 1 3.9469 0.4212 -2.8317 13 6 5.5392 -0.9509 -2.4141 14 7 5.8280 -2.1217 -1.8866 15 14 6.8055 -0.0591 -3.4585 16 1 7.1181 1.2555 -2.8424 17 1 8.0434 -0.8752 -3.5397 18 1 6.2613 0.1512 -4.8241 19 6 2.0414 -0.7235 -1.2497 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5149 0.8893 22 1 -0.3633 0.5127 -0.8907 23 1 1.6967 -1.7576 1.2350 24 1 1.6581 -0.2250 2.1390 25 1 3.6286 -0.9250 3.4072 26 1 3.8109 -2.4451 2.4993 27 1 5.8945 -1.6809 3.3822 28 1 5.1896 -1.3246 -0.0138 29 1 3.8398 -2.4823 0.0876 30 1 6.6985 -2.5212 -2.0399 31 1 1.7639 -0.1575 -2.1389 32 1 1.6053 -1.7213 -1.2983 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307002727.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:30 Heat of formation + Delta-G solvation = -70.514577 kcal Electronic energy + Delta-G solvation = -13528.205283 eV Core-core repulsion = 11294.653573 eV Total energy + Delta-G solvation = -2233.551710 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.80866 -37.46315 -35.43774 -33.27424 -32.49280 -27.39814 -27.19139 -26.51446 -23.41030 -21.49272 -20.63245 -18.68337 -18.17994 -16.92572 -15.98306 -15.91214 -15.43815 -14.93514 -14.74250 -14.32944 -14.02046 -13.41018 -13.11110 -12.94691 -12.75695 -12.59091 -12.41075 -12.15672 -11.87089 -11.74739 -11.46792 -11.16577 -11.03561 -10.77367 -10.50799 -8.68068 -7.87111 -5.33172 1.42992 1.47367 1.53677 2.50130 3.25926 3.42532 3.71555 4.06509 4.09045 4.20125 4.30090 4.43192 4.70119 4.74744 4.81373 4.84278 4.86573 4.91963 5.06382 5.11460 5.20492 5.40885 5.45988 5.52600 5.59034 5.70561 5.83065 6.39663 7.03846 7.14472 7.87407 8.38522 9.18299 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.029251 B = 0.013802 C = 0.010126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.001900 B = 2028.245891 C = 2764.494223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.103 4.103 3 H 0.055 0.945 4 C -0.089 4.089 5 C -0.111 4.111 6 H 0.048 0.952 7 C 0.090 3.910 8 O -0.594 6.594 9 C 0.193 3.807 10 N -0.616 5.616 11 C -0.271 4.271 12 H 0.065 0.935 13 C -0.051 4.051 14 N -0.932 5.932 15 Si 0.968 3.032 16 H -0.280 1.280 17 H -0.292 1.292 18 H -0.271 1.271 19 C 0.145 3.855 20 H 0.057 0.943 21 H 0.071 0.929 22 H 0.056 0.944 23 H 0.059 0.941 24 H 0.082 0.918 25 H 0.071 0.929 26 H 0.046 0.954 27 H 0.391 0.609 28 H 0.050 0.950 29 H -0.012 1.012 30 H 0.249 0.751 31 H 0.048 0.952 32 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.565 2.536 8.962 11.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.124 4.124 3 H 0.073 0.927 4 C -0.127 4.127 5 C -0.131 4.131 6 H 0.066 0.934 7 C 0.012 3.988 8 O -0.402 6.402 9 C 0.067 3.933 10 N -0.338 5.338 11 C -0.401 4.401 12 H 0.082 0.918 13 C -0.247 4.247 14 N -0.578 5.578 15 Si 0.795 3.205 16 H -0.206 1.206 17 H -0.218 1.218 18 H -0.197 1.197 19 C 0.020 3.980 20 H 0.076 0.924 21 H 0.090 0.910 22 H 0.075 0.925 23 H 0.077 0.923 24 H 0.101 0.899 25 H 0.089 0.911 26 H 0.064 0.936 27 H 0.240 0.760 28 H 0.069 0.931 29 H 0.006 0.994 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -7.528 2.759 8.357 11.581 hybrid contribution 1.116 -0.238 -0.274 1.174 sum -6.412 2.520 8.083 10.621 Atomic orbital electron populations 1.21690 0.92813 1.02125 1.02348 1.21522 0.96661 0.98876 0.95296 0.92656 1.21395 0.92577 1.00624 0.98091 1.21734 0.96825 0.99362 0.95206 0.93350 1.22184 0.80625 0.99026 0.96938 1.86576 1.21696 1.81185 1.50763 1.20469 0.97496 0.91469 0.83832 1.44392 1.01236 1.71670 1.16548 1.19490 0.99257 1.12287 1.09062 0.91767 1.25838 1.01710 0.96094 1.01061 1.70193 1.21903 1.16077 1.49626 0.85340 0.78379 0.77851 0.78896 1.20631 1.21782 1.19690 1.21149 0.83551 0.96643 0.96664 0.92439 0.90985 0.92456 0.92250 0.89906 0.91101 0.93600 0.75969 0.93122 0.99412 0.94181 0.93370 0.97010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.33 9.20 71.98 0.66 -2.66 16 2 C -0.10 -3.54 2.87 -10.72 -0.03 -3.57 16 3 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 4 C -0.09 -2.90 4.45 30.62 0.14 -2.76 16 5 C -0.11 -4.46 2.58 -10.72 -0.03 -4.48 16 6 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 7 C 0.09 2.92 6.43 71.98 0.46 3.39 16 8 O -0.59 -21.11 13.31 -148.98 -1.98 -23.09 16 9 C 0.19 10.11 4.43 86.36 0.38 10.49 16 10 N -0.62 -33.37 2.99 -699.11 -2.09 -35.47 16 11 C -0.27 -15.98 9.59 84.03 0.81 -15.17 16 12 H 0.06 3.68 7.89 -2.91 -0.02 3.65 16 13 C -0.05 -3.06 4.91 84.86 0.42 -2.65 16 14 N -0.93 -58.62 11.19 21.65 0.24 -58.38 16 15 Si 0.97 47.40 29.59 68.60 2.03 49.43 16 16 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 17 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 18 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 19 C 0.15 6.38 5.80 86.36 0.50 6.88 16 20 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 21 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 22 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 23 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 24 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 25 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 26 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 27 H 0.39 9.03 9.12 -74.06 -0.68 8.36 16 28 H 0.05 3.08 5.88 -2.39 -0.01 3.07 16 29 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 30 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 31 H 0.05 2.09 7.93 -2.39 -0.02 2.07 16 32 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 Total: -1.00 -71.40 257.34 1.91 -69.49 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: 0.41 Total: 8.57 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: 3.31 Total: -10.55 kcal Atomic # 7 Polarization: -91.99 SS G_CDS: -1.85 Total: -93.84 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -1.98 Total: -23.09 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.43 kcal Total: -71.40 1.91 -69.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307002727.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.021 kcal (2) G-P(sol) polarization free energy of solvation -71.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds