Wall clock time and date at job start Mon Mar 30 2020 02:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 109.47067 * 2 1 4 4 C 1.50710 * 109.46730 * 240.00481 * 2 1 3 5 5 H 1.07995 * 119.99655 * 239.99579 * 4 2 1 6 6 C 1.37869 * 119.99896 * 60.00544 * 4 2 1 7 7 N 1.31511 * 120.00295 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99987 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47110 * 59.99577 * 8 6 4 10 10 H 1.48500 * 109.47245 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46942 * 299.99596 * 8 6 4 12 12 N 1.46895 * 109.47014 * 120.00860 * 2 1 3 13 13 C 1.47944 * 110.99849 * 71.47319 * 12 2 1 14 14 C 1.54911 * 104.74948 * 146.36046 * 13 12 2 15 15 H 1.08998 * 110.98974 * 81.04135 * 14 13 12 16 16 O 1.42900 * 110.98928 * 204.82658 * 14 13 12 17 17 C 1.55145 * 101.68231 * 322.93254 * 14 13 12 18 18 C 1.47444 * 110.99665 * 192.32746 * 12 2 1 19 19 H 1.09003 * 109.88630 * 117.33756 * 18 12 2 20 20 C 1.52997 * 110.02442 * 356.22044 * 18 12 2 21 21 H 1.08991 * 109.46821 * 304.46117 * 1 2 3 22 22 H 1.09001 * 109.47140 * 64.46342 * 1 2 3 23 23 H 1.09005 * 109.46664 * 184.45719 * 1 2 3 24 24 H 0.97009 * 120.00041 * 180.02562 * 7 6 4 25 25 H 1.09005 * 110.37897 * 27.55499 * 13 12 2 26 26 H 1.09003 * 110.41655 * 265.18080 * 13 12 2 27 27 H 0.96699 * 113.99796 * 295.44465 * 16 14 13 28 28 H 1.09002 * 110.70243 * 154.05362 * 17 14 13 29 29 H 1.09001 * 110.70539 * 277.11290 * 17 14 13 30 30 H 1.08996 * 109.47560 * 295.39471 * 20 18 12 31 31 H 1.09001 * 109.47182 * 55.39657 * 20 18 12 32 32 H 1.09005 * 109.46874 * 175.39039 * 20 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5884 -1.1316 6 6 1.6993 -0.2391 -2.4828 7 7 0.9429 0.8299 -2.6033 8 14 2.3224 -1.1192 -4.0081 9 1 1.8279 -2.5194 -4.0085 10 1 1.8269 -0.4194 -5.2206 11 1 3.8074 -1.1187 -4.0080 12 7 2.0197 -0.6927 1.1993 13 6 1.7826 -2.1499 1.1038 14 6 2.9833 -2.7939 1.8409 15 1 2.8294 -2.7849 2.9200 16 8 3.2193 -4.1227 1.3712 17 6 4.1442 -1.8473 1.4372 18 6 3.4637 -0.4631 1.3895 19 1 3.6346 0.0667 2.3266 20 6 4.0229 0.3518 0.2215 21 1 -0.3632 0.5815 0.8473 22 1 -0.3633 0.4430 -0.9273 23 1 -0.3633 -1.0246 0.0799 24 1 0.7083 1.1612 -3.4844 25 1 1.7652 -2.4640 0.0602 26 1 0.8476 -2.4161 1.5968 27 1 2.4984 -4.7396 1.5577 28 1 4.9334 -1.8630 2.1889 29 1 4.5404 -2.1189 0.4587 30 1 3.9403 -0.2273 -0.6981 31 1 3.4562 1.2774 0.1201 32 1 5.0705 0.5861 0.4107 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307110476.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:53 Heat of formation + Delta-G solvation = -35.303815 kcal Electronic energy + Delta-G solvation = -13891.462199 eV Core-core repulsion = 11659.437342 eV Total energy + Delta-G solvation = -2232.024857 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.06477 -35.92831 -33.26001 -30.90092 -29.86580 -27.23207 -25.43639 -24.21077 -21.50576 -20.30328 -18.37128 -16.97107 -16.29201 -15.34938 -14.87922 -14.03697 -13.66192 -12.95272 -12.85018 -12.64037 -11.76903 -11.58063 -11.30494 -11.09046 -11.01737 -10.75240 -10.72994 -10.33637 -10.16061 -9.94287 -9.70519 -9.59377 -9.33894 -8.94248 -8.32984 -7.16440 -5.99687 -4.06816 3.28257 3.33453 3.37021 4.39365 4.49131 5.21140 5.27122 5.31512 5.42057 5.58437 5.96110 6.10258 6.29802 6.34475 6.54439 6.56321 6.76509 6.82261 6.92887 6.97079 7.09532 7.26107 7.51464 7.56923 7.71403 7.94002 8.02659 8.18107 8.29848 8.45445 8.97000 9.54031 11.00689 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.033311 B = 0.014260 C = 0.012905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.358267 B = 1963.032919 C = 2169.147429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.194 3.806 3 H 0.049 0.951 4 C -0.531 4.531 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.885 5.885 8 Si 0.884 3.116 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.525 5.525 13 C 0.012 3.988 14 C 0.087 3.913 15 H 0.059 0.941 16 O -0.566 6.566 17 C -0.124 4.124 18 C 0.081 3.919 19 H 0.064 0.936 20 C -0.171 4.171 21 H 0.012 0.988 22 H 0.084 0.916 23 H 0.021 0.979 24 H 0.261 0.739 25 H 0.082 0.918 26 H 0.058 0.942 27 H 0.373 0.627 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.098 0.902 31 H 0.064 0.936 32 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.728 -4.354 6.060 7.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.088 3.912 3 H 0.067 0.933 4 C -0.570 4.570 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.712 3.288 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 N -0.250 5.250 13 C -0.116 4.116 14 C 0.027 3.973 15 H 0.077 0.923 16 O -0.371 6.371 17 C -0.162 4.162 18 C -0.028 4.028 19 H 0.082 0.918 20 C -0.229 4.229 21 H 0.031 0.969 22 H 0.103 0.897 23 H 0.041 0.959 24 H 0.071 0.929 25 H 0.100 0.900 26 H 0.077 0.923 27 H 0.219 0.781 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.116 0.884 31 H 0.082 0.918 32 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 2.925 -3.735 6.136 7.756 hybrid contribution 0.176 -1.001 -1.388 1.720 sum 3.101 -4.736 4.749 7.389 Atomic orbital electron populations 1.21757 0.97966 0.98355 1.00686 1.19583 0.92146 0.94960 0.84536 0.93298 1.21640 1.31092 1.12791 0.91497 0.92051 1.24881 0.95040 0.94951 0.98721 1.69865 1.36321 1.22685 1.23510 0.86785 0.79302 0.79947 0.82795 1.20324 1.21288 1.20288 1.64039 1.12610 1.07407 1.40967 1.23702 0.96260 0.90054 1.01622 1.23050 0.96357 0.81649 0.96208 0.92308 1.86482 1.46645 1.20410 1.83514 1.22803 0.96699 0.94739 1.01987 1.22105 0.88678 0.93900 0.98082 0.91823 1.22640 0.97446 1.02029 1.00752 0.96874 0.89694 0.95950 0.92863 0.89957 0.92341 0.78109 0.91963 0.90577 0.88388 0.91751 0.95505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 9.16 37.16 0.34 -2.82 16 2 C 0.19 4.76 1.90 -68.86 -0.13 4.63 16 3 H 0.05 1.31 5.79 -51.93 -0.30 1.01 16 4 C -0.53 -13.74 4.38 -34.44 -0.15 -13.89 16 5 H 0.06 1.62 5.85 -52.49 -0.31 1.31 16 6 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 7 N -0.89 -24.53 11.29 55.43 0.63 -23.90 16 8 Si 0.88 20.97 29.54 -169.99 -5.02 15.95 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 N -0.52 -11.32 5.11 -216.73 -1.11 -12.43 16 13 C 0.01 0.24 5.19 -2.24 -0.01 0.23 16 14 C 0.09 1.50 4.42 -24.59 -0.11 1.39 16 15 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 16 O -0.57 -9.33 13.47 -35.23 -0.47 -9.80 16 17 C -0.12 -2.23 6.20 -24.91 -0.15 -2.39 16 18 C 0.08 1.59 3.87 -66.73 -0.26 1.33 16 19 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 20 C -0.17 -3.53 7.74 37.16 0.29 -3.24 16 21 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 22 H 0.08 2.25 5.96 -51.93 -0.31 1.94 16 23 H 0.02 0.52 7.46 -51.93 -0.39 0.13 16 24 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 25 H 0.08 1.87 5.39 -51.93 -0.28 1.59 16 26 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.37 4.39 9.12 45.56 0.42 4.81 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.08 1.49 7.79 -51.93 -0.40 1.09 16 30 H 0.10 2.28 5.02 -51.93 -0.26 2.01 16 31 H 0.06 1.42 6.01 -51.93 -0.31 1.11 16 32 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 244.43 15.07 3.68 3.68 Total: -1.00 -27.93 244.43 -6.39 -34.32 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -3.82 Total: 5.26 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: -0.28 Total: -13.09 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: -0.48 Total: -36.33 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: -0.47 Total: -9.80 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -27.93 -6.39 -34.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307110476.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.980 kcal (2) G-P(sol) polarization free energy of solvation -27.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds