Wall clock time and date at job start Mon Mar 30 2020 02:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 109.47067 * 2 1 4 4 C 1.50710 * 109.46730 * 240.00481 * 2 1 3 5 5 H 1.07995 * 119.99655 * 239.99579 * 4 2 1 6 6 C 1.37869 * 119.99896 * 60.00544 * 4 2 1 7 7 N 1.31511 * 120.00295 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99987 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47110 * 59.99577 * 8 6 4 10 10 H 1.48500 * 109.47245 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46942 * 299.99596 * 8 6 4 12 12 N 1.46895 * 109.47014 * 120.00860 * 2 1 3 13 13 C 1.47944 * 110.99849 * 71.47319 * 12 2 1 14 14 C 1.54911 * 104.74948 * 146.36046 * 13 12 2 15 15 H 1.08998 * 110.98974 * 81.04135 * 14 13 12 16 16 O 1.42900 * 110.98928 * 204.82658 * 14 13 12 17 17 C 1.55145 * 101.68231 * 322.93254 * 14 13 12 18 18 C 1.47444 * 110.99665 * 192.32746 * 12 2 1 19 19 H 1.09003 * 109.88630 * 117.33756 * 18 12 2 20 20 C 1.52997 * 110.02442 * 356.22044 * 18 12 2 21 21 H 1.08991 * 109.46821 * 304.46117 * 1 2 3 22 22 H 1.09001 * 109.47140 * 64.46342 * 1 2 3 23 23 H 1.09005 * 109.46664 * 184.45719 * 1 2 3 24 24 H 0.97009 * 120.00041 * 180.02562 * 7 6 4 25 25 H 1.09005 * 110.37897 * 27.55499 * 13 12 2 26 26 H 1.09003 * 110.41655 * 265.18080 * 13 12 2 27 27 H 0.96699 * 113.99796 * 295.44465 * 16 14 13 28 28 H 1.09002 * 110.70243 * 154.05362 * 17 14 13 29 29 H 1.09001 * 110.70539 * 277.11290 * 17 14 13 30 30 H 1.08996 * 109.47560 * 295.39471 * 20 18 12 31 31 H 1.09001 * 109.47182 * 55.39657 * 20 18 12 32 32 H 1.09005 * 109.46874 * 175.39039 * 20 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5884 -1.1316 6 6 1.6993 -0.2391 -2.4828 7 7 0.9429 0.8299 -2.6033 8 14 2.3224 -1.1192 -4.0081 9 1 1.8279 -2.5194 -4.0085 10 1 1.8269 -0.4194 -5.2206 11 1 3.8074 -1.1187 -4.0080 12 7 2.0197 -0.6927 1.1993 13 6 1.7826 -2.1499 1.1038 14 6 2.9833 -2.7939 1.8409 15 1 2.8294 -2.7849 2.9200 16 8 3.2193 -4.1227 1.3712 17 6 4.1442 -1.8473 1.4372 18 6 3.4637 -0.4631 1.3895 19 1 3.6346 0.0667 2.3266 20 6 4.0229 0.3518 0.2215 21 1 -0.3632 0.5815 0.8473 22 1 -0.3633 0.4430 -0.9273 23 1 -0.3633 -1.0246 0.0799 24 1 0.7083 1.1612 -3.4844 25 1 1.7652 -2.4640 0.0602 26 1 0.8476 -2.4161 1.5968 27 1 2.4984 -4.7396 1.5577 28 1 4.9334 -1.8630 2.1889 29 1 4.5404 -2.1189 0.4587 30 1 3.9403 -0.2273 -0.6981 31 1 3.4562 1.2774 0.1201 32 1 5.0705 0.5861 0.4107 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307110476.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:53 Heat of formation + Delta-G solvation = -56.500187 kcal Electronic energy + Delta-G solvation = -13892.381342 eV Core-core repulsion = 11659.437342 eV Total energy + Delta-G solvation = -2232.944001 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.66669 -37.36428 -35.11783 -32.72891 -31.46583 -28.95153 -27.40872 -25.88560 -23.21232 -21.85517 -20.10607 -18.58773 -17.96312 -16.99087 -16.68323 -15.68284 -15.40474 -14.60177 -14.50055 -14.30423 -13.43648 -13.28712 -13.16568 -12.88192 -12.63730 -12.58418 -12.50982 -12.14876 -11.85647 -11.70194 -11.41431 -11.34466 -10.86867 -10.76000 -10.37215 -8.93701 -8.02022 -6.14816 1.37758 1.39732 1.45804 2.41300 3.12149 3.18639 3.78529 3.84943 3.89653 4.20879 4.47408 4.63443 4.75661 4.83534 4.90988 5.00292 5.08205 5.11800 5.17729 5.21787 5.32443 5.40332 5.59502 5.71424 5.79144 6.03557 6.22894 6.40042 6.60704 6.92089 6.98003 7.47683 8.95452 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.033311 B = 0.014260 C = 0.012905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.358267 B = 1963.032919 C = 2169.147429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.200 3.800 3 H 0.024 0.976 4 C -0.522 4.522 5 H 0.054 0.946 6 C 0.021 3.979 7 N -0.913 5.913 8 Si 0.936 3.064 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.529 5.529 13 C 0.011 3.989 14 C 0.100 3.900 15 H 0.087 0.913 16 O -0.577 6.577 17 C -0.122 4.122 18 C 0.076 3.924 19 H 0.085 0.915 20 C -0.162 4.162 21 H 0.024 0.976 22 H 0.060 0.940 23 H 0.024 0.976 24 H 0.260 0.740 25 H 0.051 0.949 26 H 0.070 0.930 27 H 0.394 0.606 28 H 0.092 0.908 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.041 0.959 32 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.540 -5.474 7.290 9.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.092 3.908 3 H 0.042 0.958 4 C -0.561 4.561 5 H 0.072 0.928 6 C -0.179 4.179 7 N -0.553 5.553 8 Si 0.763 3.237 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.254 5.254 13 C -0.117 4.117 14 C 0.040 3.960 15 H 0.105 0.895 16 O -0.385 6.385 17 C -0.160 4.160 18 C -0.032 4.032 19 H 0.103 0.897 20 C -0.220 4.220 21 H 0.043 0.957 22 H 0.079 0.921 23 H 0.043 0.957 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.088 0.912 27 H 0.243 0.757 28 H 0.111 0.889 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.060 0.940 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.735 -4.878 7.375 9.599 hybrid contribution -0.065 -0.670 -1.719 1.846 sum 3.670 -5.548 5.656 8.732 Atomic orbital electron populations 1.21614 0.98020 0.98385 0.99893 1.19364 0.92085 0.93875 0.85458 0.95842 1.21744 1.30112 1.12114 0.92134 0.92797 1.25493 0.95572 0.95674 1.01137 1.69977 1.37599 1.23899 1.23793 0.85945 0.78750 0.78890 0.80078 1.20210 1.21117 1.20090 1.63994 1.14134 1.08335 1.38927 1.23709 0.98440 0.89208 1.00375 1.22934 0.94164 0.81735 0.97132 0.89521 1.86440 1.47949 1.20318 1.83767 1.22770 0.97671 0.93711 1.01877 1.22245 0.87578 0.95099 0.98256 0.89721 1.22461 0.98935 1.00572 1.00026 0.95705 0.92084 0.95671 0.93066 0.93125 0.91170 0.75678 0.88944 0.92709 0.91353 0.94024 0.92807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.92 9.16 71.98 0.66 -5.26 16 2 C 0.20 9.84 1.90 44.18 0.08 9.92 16 3 H 0.02 1.29 5.79 -2.39 -0.01 1.28 16 4 C -0.52 -27.28 4.38 25.60 0.11 -27.17 16 5 H 0.05 2.88 5.85 -2.91 -0.02 2.86 16 6 C 0.02 1.11 5.29 84.65 0.45 1.56 16 7 N -0.91 -51.54 11.29 21.44 0.24 -51.30 16 8 Si 0.94 43.43 29.54 68.60 2.03 45.45 16 9 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 10 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 11 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 12 N -0.53 -22.15 5.11 -839.59 -4.29 -26.45 16 13 C 0.01 0.43 5.19 86.76 0.45 0.88 16 14 C 0.10 3.12 4.42 31.98 0.14 3.26 16 15 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 16 O -0.58 -17.28 13.47 -148.98 -2.01 -19.28 16 17 C -0.12 -4.05 6.20 31.78 0.20 -3.86 16 18 C 0.08 2.84 3.87 45.26 0.18 3.02 16 19 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 20 C -0.16 -6.60 7.74 71.98 0.56 -6.05 16 21 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 22 H 0.06 3.29 5.96 -2.39 -0.01 3.27 16 23 H 0.02 1.16 7.46 -2.38 -0.02 1.14 16 24 H 0.26 14.15 8.31 -92.70 -0.77 13.38 16 25 H 0.05 2.27 5.39 -2.38 -0.01 2.25 16 26 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 27 H 0.39 8.02 9.12 -74.06 -0.68 7.34 16 28 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 29 H 0.05 2.05 7.79 -2.39 -0.02 2.04 16 30 H 0.07 3.19 5.02 -2.39 -0.01 3.18 16 31 H 0.04 1.85 6.01 -2.39 -0.01 1.84 16 32 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 Total: -1.00 -59.19 244.43 -0.77 -59.96 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: 0.44 Total: 15.32 kcal Atomic # 6 Polarization: -26.51 SS G_CDS: 2.82 Total: -23.69 kcal Atomic # 7 Polarization: -73.70 SS G_CDS: -4.05 Total: -77.75 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -2.01 Total: -19.28 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.45 kcal Total: -59.19 -0.77 -59.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307110476.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.455 kcal (2) G-P(sol) polarization free energy of solvation -59.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds