Wall clock time and date at job start Mon Mar 30 2020 02:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.47128 * 2 1 4 4 C 1.50695 * 109.47262 * 239.99828 * 2 1 3 5 5 H 1.08004 * 120.00259 * 239.99623 * 4 2 1 6 6 C 1.37877 * 120.00187 * 60.00190 * 4 2 1 7 7 N 1.31509 * 120.00172 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 119.99708 * 359.97438 * 6 4 2 9 9 H 1.48498 * 109.47275 * 270.00059 * 8 6 4 10 10 H 1.48503 * 109.47036 * 30.00428 * 8 6 4 11 11 H 1.48502 * 109.47044 * 150.00575 * 8 6 4 12 12 N 1.46906 * 109.47088 * 119.99544 * 2 1 3 13 13 C 1.48536 * 110.99581 * 63.83405 * 12 2 1 14 14 C 1.54940 * 103.22356 * 159.72184 * 13 12 2 15 15 H 1.08996 * 110.88104 * 81.01223 * 14 13 12 16 16 O 1.42900 * 110.72215 * 204.22822 * 14 13 12 17 17 C 1.54599 * 102.92030 * 322.58142 * 14 13 12 18 18 C 1.47904 * 111.00014 * 181.22651 * 12 2 1 19 19 H 1.09003 * 109.91452 * 333.70937 * 18 12 2 20 20 C 1.52997 * 109.91977 * 94.80354 * 18 12 2 21 21 H 1.09001 * 109.46934 * 173.87621 * 1 2 3 22 22 H 1.09002 * 109.47394 * 293.87362 * 1 2 3 23 23 H 1.08995 * 109.47517 * 53.88020 * 1 2 3 24 24 H 0.96998 * 119.99944 * 179.97438 * 7 6 4 25 25 H 1.09002 * 110.66273 * 278.14821 * 13 12 2 26 26 H 1.08992 * 110.66904 * 41.28869 * 13 12 2 27 27 H 0.96699 * 113.99900 * 293.49607 * 16 14 13 28 28 H 1.09004 * 110.30914 * 263.04010 * 17 14 13 29 29 H 1.08993 * 110.30825 * 140.88009 * 17 14 13 30 30 H 1.08998 * 109.46687 * 56.58947 * 20 18 12 31 31 H 1.08999 * 109.47471 * 176.59353 * 20 18 12 32 32 H 1.09005 * 109.46807 * 296.59970 * 20 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 2.1381 -0.8591 -3.5564 8 14 0.6248 1.2790 -2.6541 9 1 -0.8028 0.8726 -2.6998 10 1 0.8471 2.1764 -1.4920 11 1 0.9759 1.9949 -3.9069 12 7 2.0196 -0.6924 1.1995 13 6 1.6205 -2.1231 1.1884 14 6 2.6186 -2.7772 2.1766 15 1 2.2989 -2.6275 3.2078 16 8 2.7713 -4.1696 1.8935 17 6 3.9336 -2.0145 1.8952 18 6 3.4978 -0.6866 1.2486 19 1 3.9025 -0.6113 0.2393 20 6 3.9867 0.4904 2.0950 21 1 -0.3633 -1.0218 -0.1096 22 1 -0.3634 0.4159 0.9397 23 1 -0.3634 0.6057 -0.8301 24 1 1.9035 -0.5279 -4.4374 25 1 0.5963 -2.2395 1.5428 26 1 1.7339 -2.5464 0.1905 27 1 1.9743 -4.6932 2.0536 28 1 4.5607 -2.5822 1.2079 29 1 4.4674 -1.8246 2.8264 30 1 3.5454 0.4305 3.0898 31 1 5.0730 0.4531 2.1764 32 1 3.6897 1.4264 1.6217 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307110481.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:57 Heat of formation + Delta-G solvation = -68.508634 kcal Electronic energy + Delta-G solvation = -13680.756882 eV Core-core repulsion = 11447.292156 eV Total energy + Delta-G solvation = -2233.464726 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.47362 -37.33702 -35.29754 -33.50426 -31.29309 -29.44218 -27.22432 -26.26170 -23.10904 -21.52876 -20.75144 -18.87515 -18.26120 -17.21428 -16.23101 -15.77024 -15.28127 -14.77656 -14.70469 -14.50337 -14.16465 -13.61678 -13.41936 -13.10207 -12.94739 -12.59326 -12.28244 -12.03640 -11.86621 -11.70307 -11.45773 -11.44478 -11.29151 -10.78646 -10.74604 -9.10575 -8.33223 -6.37444 1.28582 1.33934 1.44414 2.29091 3.02274 3.07926 3.59528 3.82323 3.88440 4.16206 4.45570 4.52045 4.57410 4.69017 4.73196 4.79227 4.91614 4.94074 5.03211 5.07120 5.17300 5.20667 5.31402 5.40233 5.48438 5.58644 6.12922 6.25482 6.33972 6.69909 6.92600 7.29557 8.83410 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.039257 B = 0.012448 C = 0.011672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.077647 B = 2248.794471 C = 2398.341862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.167 3.833 3 H 0.033 0.967 4 C -0.535 4.535 5 H 0.035 0.965 6 C 0.013 3.987 7 N -0.949 5.949 8 Si 0.952 3.048 9 H -0.266 1.266 10 H -0.247 1.247 11 H -0.301 1.301 12 N -0.494 5.494 13 C 0.007 3.993 14 C 0.106 3.894 15 H 0.094 0.906 16 O -0.582 6.582 17 C -0.115 4.115 18 C 0.054 3.946 19 H 0.030 0.970 20 C -0.122 4.122 21 H 0.047 0.953 22 H 0.068 0.932 23 H 0.034 0.966 24 H 0.265 0.735 25 H 0.085 0.915 26 H 0.031 0.969 27 H 0.394 0.606 28 H 0.050 0.950 29 H 0.100 0.900 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.403 0.447 12.784 12.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.051 0.949 4 C -0.574 4.574 5 H 0.053 0.947 6 C -0.184 4.184 7 N -0.589 5.589 8 Si 0.779 3.221 9 H -0.192 1.192 10 H -0.171 1.171 11 H -0.229 1.229 12 N -0.218 5.218 13 C -0.122 4.122 14 C 0.047 3.953 15 H 0.112 0.888 16 O -0.389 6.389 17 C -0.153 4.153 18 C -0.055 4.055 19 H 0.048 0.952 20 C -0.179 4.179 21 H 0.066 0.934 22 H 0.087 0.913 23 H 0.052 0.948 24 H 0.074 0.926 25 H 0.104 0.896 26 H 0.049 0.951 27 H 0.244 0.756 28 H 0.069 0.931 29 H 0.119 0.881 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.020 0.914 12.907 12.980 hybrid contribution -0.549 -0.185 -1.723 1.818 sum -1.569 0.729 11.184 11.317 Atomic orbital electron populations 1.21997 0.96643 1.00770 1.00036 1.19730 0.93007 0.94521 0.86976 0.94938 1.21801 1.31325 1.12620 0.91640 0.94732 1.25856 0.97215 0.99953 0.95424 1.70072 1.47611 1.42567 0.98638 0.85815 0.79157 0.79972 0.77187 1.19168 1.17053 1.22874 1.65034 1.08476 1.11394 1.36939 1.23818 0.99822 0.89879 0.98678 1.22741 0.94774 0.80211 0.97623 0.88808 1.86471 1.41846 1.19302 1.91284 1.22422 0.96976 0.94371 1.01554 1.22366 0.89122 0.95914 0.98089 0.95196 1.21666 1.00510 0.96037 0.99707 0.93390 0.91299 0.94777 0.92639 0.89624 0.95066 0.75636 0.93088 0.88110 0.90882 0.91219 0.93944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.69 8.39 71.98 0.60 -5.09 16 2 C 0.17 7.75 1.99 44.16 0.09 7.84 16 3 H 0.03 1.57 7.20 -2.38 -0.02 1.55 16 4 C -0.54 -30.27 6.93 25.60 0.18 -30.09 16 5 H 0.03 2.22 6.27 -2.91 -0.02 2.20 16 6 C 0.01 0.77 5.45 84.66 0.46 1.23 16 7 N -0.95 -59.88 13.96 21.45 0.30 -59.58 16 8 Si 0.95 45.08 24.31 68.60 1.67 46.75 16 9 H -0.27 -11.95 6.93 99.48 0.69 -11.26 16 10 H -0.25 -10.82 6.53 99.48 0.65 -10.17 16 11 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 12 N -0.49 -19.83 4.93 -837.44 -4.12 -23.95 16 13 C 0.01 0.26 5.08 86.65 0.44 0.70 16 14 C 0.11 3.30 4.44 31.80 0.14 3.44 16 15 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 16 O -0.58 -17.87 13.40 -148.98 -2.00 -19.87 16 17 C -0.12 -3.83 6.33 31.47 0.20 -3.63 16 18 C 0.05 2.07 2.73 45.05 0.12 2.19 16 19 H 0.03 1.42 6.38 -2.39 -0.02 1.41 16 20 C -0.12 -3.69 9.32 71.98 0.67 -3.02 16 21 H 0.05 1.99 7.35 -2.39 -0.02 1.97 16 22 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 23 H 0.03 1.44 3.46 -2.39 -0.01 1.43 16 24 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 25 H 0.09 2.86 7.83 -2.39 -0.02 2.84 16 26 H 0.03 1.48 5.97 -2.39 -0.01 1.46 16 27 H 0.39 8.21 9.12 -74.06 -0.68 7.53 16 28 H 0.05 1.89 8.07 -2.38 -0.02 1.88 16 29 H 0.10 2.66 7.68 -2.39 -0.02 2.65 16 30 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 Total: -1.00 -67.56 246.18 -0.89 -68.46 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: 0.36 Total: 14.62 kcal Atomic # 6 Polarization: -29.34 SS G_CDS: 2.91 Total: -26.43 kcal Atomic # 7 Polarization: -79.70 SS G_CDS: -3.83 Total: -83.53 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -2.00 Total: -19.87 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.67 Total: 46.75 kcal Total: -67.56 -0.89 -68.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307110481.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.052 kcal (2) G-P(sol) polarization free energy of solvation -67.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds