Wall clock time and date at job start Mon Mar 30 2020 02:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08991 * 110.33489 * 2 1 4 4 C 1.54910 * 110.37270 * 122.37501 * 2 1 3 5 5 H 1.09003 * 110.98963 * 37.80922 * 4 2 1 6 6 C 1.52995 * 110.99015 * 273.98751 * 4 2 1 7 7 O 1.42897 * 109.47133 * 175.00142 * 6 4 2 8 8 C 1.55145 * 101.65166 * 155.89528 * 4 2 1 9 9 C 1.54316 * 103.01950 * 324.35069 * 8 4 2 10 10 N 1.47444 * 107.23657 * 22.27909 * 9 8 4 11 11 C 1.46900 * 110.99868 * 123.26298 * 10 9 8 12 12 C 1.50699 * 109.47449 * 49.15805 * 11 10 9 13 13 H 1.07999 * 119.99853 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00199 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99552 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 119.99912 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47303 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47141 * 120.00086 * 16 14 12 19 19 H 1.48501 * 109.47154 * 239.99669 * 16 14 12 20 20 H 1.08994 * 109.47357 * 180.80115 * 1 2 3 21 21 H 1.08998 * 109.46865 * 300.79876 * 1 2 3 22 22 H 1.08994 * 109.46919 * 60.79701 * 1 2 3 23 23 H 1.08999 * 109.47190 * 294.99938 * 6 4 2 24 24 H 1.09001 * 109.47032 * 55.00369 * 6 4 2 25 25 H 0.96700 * 114.00484 * 180.02562 * 7 6 4 26 26 H 1.08990 * 110.70410 * 205.96146 * 8 4 2 27 27 H 1.09004 * 110.85050 * 82.79897 * 8 4 2 28 28 H 1.09004 * 109.88679 * 262.87658 * 9 8 4 29 29 H 1.08997 * 110.02845 * 141.76936 * 9 8 4 30 30 H 1.08999 * 109.46789 * 169.16054 * 11 10 9 31 31 H 1.09003 * 109.47046 * 289.15775 * 11 10 9 32 32 H 0.97000 * 119.99576 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9088 1.0220 0.0000 4 6 2.0693 -0.7776 1.2265 5 1 1.4515 -1.6504 1.4379 6 6 2.1670 0.1323 2.4526 7 8 2.5552 -0.6410 3.5898 8 6 3.4787 -1.2004 0.7345 9 6 3.2535 -1.4799 -0.7664 10 7 2.0447 -0.7396 -1.1721 11 6 2.3357 0.1741 -2.2850 12 6 3.0810 -0.5692 -3.3635 13 1 3.3155 -1.6155 -3.2349 14 6 3.4645 0.0869 -4.5139 15 7 3.1794 1.3612 -4.6702 16 14 4.3890 -0.8342 -5.8504 17 1 4.5849 -2.2460 -5.4337 18 1 3.6061 -0.7939 -7.1116 19 1 5.7115 -0.1948 -6.0681 20 1 -0.3634 -1.0275 0.0144 21 1 -0.3633 0.5262 0.8827 22 1 -0.3633 0.5014 -0.8970 23 1 2.9099 0.9088 2.2705 24 1 1.1976 0.5937 2.6407 25 1 2.6367 -0.1277 4.4053 26 1 3.8119 -2.1018 1.2487 27 1 4.1965 -0.3919 0.8725 28 1 3.1055 -2.5479 -0.9265 29 1 4.1113 -1.1341 -1.3432 30 1 1.4013 0.5620 -2.6904 31 1 2.9470 1.0017 -1.9252 32 1 3.4489 1.8227 -5.4797 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307141137.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:53 Heat of formation + Delta-G solvation = -57.696999 kcal Electronic energy + Delta-G solvation = -13183.860789 eV Core-core repulsion = 10950.864890 eV Total energy + Delta-G solvation = -2232.995898 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.83646 -36.41264 -33.20616 -31.26613 -30.76391 -27.36085 -25.60733 -23.33271 -22.37675 -19.85138 -19.33750 -17.15180 -16.09380 -15.50939 -14.98730 -14.33237 -14.09692 -13.27216 -13.10004 -13.07569 -12.28370 -12.12039 -11.57083 -11.47211 -11.26608 -10.94653 -10.58475 -10.54797 -10.40224 -10.19189 -9.98007 -9.78271 -9.73435 -9.06430 -8.47822 -7.18773 -6.04040 -4.04794 3.30528 3.37951 3.43018 4.24268 4.43947 4.84996 5.06766 5.27417 5.31280 5.41750 5.60440 5.67371 5.82367 5.86230 6.02425 6.13505 6.15841 6.37048 6.42835 6.59751 6.77355 6.84354 6.87333 7.28826 7.44995 7.64560 7.81033 8.05132 8.27331 8.56125 9.03574 9.59294 11.07327 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.057653 B = 0.008389 C = 0.007845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.549671 B = 3336.869629 C = 3568.490618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.073 3.927 3 H 0.047 0.953 4 C -0.093 4.093 5 H 0.085 0.915 6 C 0.086 3.914 7 O -0.573 6.573 8 C -0.133 4.133 9 C 0.050 3.950 10 N -0.525 5.525 11 C 0.188 3.812 12 C -0.513 4.513 13 H 0.065 0.935 14 C 0.056 3.944 15 N -0.897 5.897 16 Si 0.897 3.103 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.285 1.285 20 H 0.057 0.943 21 H 0.045 0.955 22 H 0.057 0.943 23 H 0.044 0.956 24 H 0.045 0.955 25 H 0.373 0.627 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.031 0.969 31 H -0.010 1.010 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.626 -1.436 12.178 12.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.036 4.036 3 H 0.065 0.935 4 C -0.112 4.112 5 H 0.104 0.896 6 C 0.008 3.992 7 O -0.378 6.378 8 C -0.171 4.171 9 C -0.078 4.078 10 N -0.250 5.250 11 C 0.063 3.937 12 C -0.552 4.552 13 H 0.083 0.917 14 C -0.146 4.146 15 N -0.537 5.537 16 Si 0.725 3.275 17 H -0.196 1.196 18 H -0.210 1.210 19 H -0.211 1.211 20 H 0.076 0.924 21 H 0.064 0.936 22 H 0.076 0.924 23 H 0.062 0.938 24 H 0.063 0.937 25 H 0.219 0.781 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.049 0.951 31 H 0.008 0.992 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.989 -2.117 11.392 11.757 hybrid contribution 1.110 0.772 -0.204 1.367 sum -0.879 -1.345 11.188 11.303 Atomic orbital electron populations 1.21676 0.94807 1.01773 1.00609 1.22463 0.95564 0.95850 0.89681 0.93523 1.22334 0.97801 0.98623 0.92467 0.89645 1.22198 0.97986 0.93189 0.85817 1.86500 1.92160 1.39560 1.19578 1.22832 0.95868 1.01017 0.97399 1.22711 0.93958 0.98783 0.92383 1.63611 1.28598 1.27158 1.05612 1.19897 0.95984 0.90234 0.87604 1.21292 1.35288 0.96960 1.01616 0.91696 1.24996 0.96289 0.94901 0.98384 1.69974 1.47120 1.09143 1.27427 0.86454 0.79365 0.80002 0.81709 1.19632 1.20954 1.21105 0.92365 0.93605 0.92414 0.93769 0.93723 0.78065 0.91584 0.92231 0.92210 0.90990 0.95104 0.99207 0.92976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 9.59 37.16 0.36 -1.78 16 2 C 0.07 1.36 2.52 -66.18 -0.17 1.19 16 3 H 0.05 0.90 7.50 -51.93 -0.39 0.51 16 4 C -0.09 -1.51 2.71 -88.48 -0.24 -1.75 16 5 H 0.09 1.41 8.06 -51.93 -0.42 0.99 16 6 C 0.09 1.14 6.50 37.16 0.24 1.39 16 7 O -0.57 -7.28 13.62 -35.23 -0.48 -7.76 16 8 C -0.13 -2.28 6.37 -24.91 -0.16 -2.44 16 9 C 0.05 1.03 5.78 -2.84 -0.02 1.01 16 10 N -0.52 -11.75 4.96 -224.81 -1.12 -12.87 16 11 C 0.19 5.01 4.82 -4.98 -0.02 4.99 16 12 C -0.51 -14.58 7.91 -34.44 -0.27 -14.85 16 13 H 0.06 1.82 6.86 -52.49 -0.36 1.46 16 14 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 15 N -0.90 -26.88 13.29 55.43 0.74 -26.15 16 16 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 17 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 21 H 0.04 0.62 7.96 -51.93 -0.41 0.20 16 22 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 23 H 0.04 0.58 7.98 -51.93 -0.41 0.16 16 24 H 0.04 0.53 7.96 -51.93 -0.41 0.11 16 25 H 0.37 2.83 9.12 45.56 0.42 3.24 16 26 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 27 H 0.06 1.01 7.92 -51.93 -0.41 0.60 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.07 1.63 6.48 -51.93 -0.34 1.30 16 30 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 31 H -0.01 -0.28 7.82 -51.93 -0.41 -0.68 16 32 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 261.08 15.07 3.93 3.93 Total: -1.00 -31.15 261.08 -6.72 -37.87 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: -4.40 Total: -1.06 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: -0.38 Total: -10.74 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: -0.38 Total: -39.01 kcal Atomic # 8 Polarization: -7.28 SS G_CDS: -0.48 Total: -7.76 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -31.15 -6.72 -37.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307141137.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.827 kcal (2) G-P(sol) polarization free energy of solvation -31.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds