Wall clock time and date at job start Mon Mar 30 2020 02:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08991 * 110.33489 * 2 1 4 4 C 1.54910 * 110.37270 * 122.37501 * 2 1 3 5 5 H 1.09003 * 110.98963 * 37.80922 * 4 2 1 6 6 C 1.52995 * 110.99015 * 273.98751 * 4 2 1 7 7 O 1.42897 * 109.47133 * 175.00142 * 6 4 2 8 8 C 1.55145 * 101.65166 * 155.89528 * 4 2 1 9 9 C 1.54316 * 103.01950 * 324.35069 * 8 4 2 10 10 N 1.47444 * 107.23657 * 22.27909 * 9 8 4 11 11 C 1.46900 * 110.99868 * 123.26298 * 10 9 8 12 12 C 1.50699 * 109.47449 * 49.15805 * 11 10 9 13 13 H 1.07999 * 119.99853 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00199 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99552 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 119.99912 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47303 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47141 * 120.00086 * 16 14 12 19 19 H 1.48501 * 109.47154 * 239.99669 * 16 14 12 20 20 H 1.08994 * 109.47357 * 180.80115 * 1 2 3 21 21 H 1.08998 * 109.46865 * 300.79876 * 1 2 3 22 22 H 1.08994 * 109.46919 * 60.79701 * 1 2 3 23 23 H 1.08999 * 109.47190 * 294.99938 * 6 4 2 24 24 H 1.09001 * 109.47032 * 55.00369 * 6 4 2 25 25 H 0.96700 * 114.00484 * 180.02562 * 7 6 4 26 26 H 1.08990 * 110.70410 * 205.96146 * 8 4 2 27 27 H 1.09004 * 110.85050 * 82.79897 * 8 4 2 28 28 H 1.09004 * 109.88679 * 262.87658 * 9 8 4 29 29 H 1.08997 * 110.02845 * 141.76936 * 9 8 4 30 30 H 1.08999 * 109.46789 * 169.16054 * 11 10 9 31 31 H 1.09003 * 109.47046 * 289.15775 * 11 10 9 32 32 H 0.97000 * 119.99576 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9088 1.0220 0.0000 4 6 2.0693 -0.7776 1.2265 5 1 1.4515 -1.6504 1.4379 6 6 2.1670 0.1323 2.4526 7 8 2.5552 -0.6410 3.5898 8 6 3.4787 -1.2004 0.7345 9 6 3.2535 -1.4799 -0.7664 10 7 2.0447 -0.7396 -1.1721 11 6 2.3357 0.1741 -2.2850 12 6 3.0810 -0.5692 -3.3635 13 1 3.3155 -1.6155 -3.2349 14 6 3.4645 0.0869 -4.5139 15 7 3.1794 1.3612 -4.6702 16 14 4.3890 -0.8342 -5.8504 17 1 4.5849 -2.2460 -5.4337 18 1 3.6061 -0.7939 -7.1116 19 1 5.7115 -0.1948 -6.0681 20 1 -0.3634 -1.0275 0.0144 21 1 -0.3633 0.5262 0.8827 22 1 -0.3633 0.5014 -0.8970 23 1 2.9099 0.9088 2.2705 24 1 1.1976 0.5937 2.6407 25 1 2.6367 -0.1277 4.4053 26 1 3.8119 -2.1018 1.2487 27 1 4.1965 -0.3919 0.8725 28 1 3.1055 -2.5479 -0.9265 29 1 4.1113 -1.1341 -1.3432 30 1 1.4013 0.5620 -2.6904 31 1 2.9470 1.0017 -1.9252 32 1 3.4489 1.8227 -5.4797 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307141137.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:53 Heat of formation + Delta-G solvation = -81.791585 kcal Electronic energy + Delta-G solvation = -13184.905608 eV Core-core repulsion = 10950.864890 eV Total energy + Delta-G solvation = -2234.040718 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.34181 -37.52401 -35.21608 -33.02282 -32.22837 -29.03898 -27.35425 -24.68209 -24.32683 -21.34810 -20.89036 -18.34225 -18.08616 -17.06435 -16.67434 -15.90751 -15.53251 -14.81420 -14.70638 -14.46921 -14.03459 -13.86857 -13.14978 -13.06857 -12.81167 -12.79291 -12.30997 -12.17014 -11.93462 -11.64677 -11.56306 -11.51738 -11.15143 -10.80600 -10.67084 -9.01925 -8.24638 -6.34083 1.38747 1.39494 1.53236 2.37991 3.08373 3.16106 3.35434 3.76089 3.96896 4.08645 4.34685 4.48462 4.50221 4.53757 4.57565 4.81243 4.82886 4.94913 5.02793 5.09160 5.16968 5.19957 5.30267 5.43438 5.44954 5.64809 5.98906 6.31686 6.61758 6.83495 6.94817 7.35589 8.87696 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.057653 B = 0.008389 C = 0.007845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.549671 B = 3336.869629 C = 3568.490618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.067 3.933 3 H 0.035 0.965 4 C -0.084 4.084 5 H 0.088 0.912 6 C 0.093 3.907 7 O -0.586 6.586 8 C -0.124 4.124 9 C 0.047 3.953 10 N -0.536 5.536 11 C 0.207 3.793 12 C -0.531 4.531 13 H 0.064 0.936 14 C 0.002 3.998 15 N -0.933 5.933 16 Si 0.970 3.030 17 H -0.264 1.264 18 H -0.277 1.277 19 H -0.277 1.277 20 H 0.060 0.940 21 H 0.081 0.919 22 H 0.037 0.963 23 H 0.045 0.955 24 H 0.066 0.934 25 H 0.397 0.603 26 H 0.083 0.917 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.044 0.956 30 H 0.002 0.998 31 H -0.039 1.039 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.497 -2.288 13.357 13.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.042 4.042 3 H 0.053 0.947 4 C -0.103 4.103 5 H 0.106 0.894 6 C 0.015 3.985 7 O -0.395 6.395 8 C -0.163 4.163 9 C -0.080 4.080 10 N -0.260 5.260 11 C 0.080 3.920 12 C -0.569 4.569 13 H 0.083 0.917 14 C -0.196 4.196 15 N -0.574 5.574 16 Si 0.795 3.205 17 H -0.188 1.188 18 H -0.202 1.202 19 H -0.202 1.202 20 H 0.079 0.921 21 H 0.099 0.901 22 H 0.056 0.944 23 H 0.064 0.936 24 H 0.084 0.916 25 H 0.247 0.753 26 H 0.102 0.898 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.062 0.938 30 H 0.020 0.980 31 H -0.021 1.021 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.865 -2.969 12.611 13.089 hybrid contribution 1.050 1.046 -0.508 1.567 sum -0.815 -1.923 12.103 12.282 Atomic orbital electron populations 1.21646 0.93020 1.02245 1.01358 1.22605 0.96963 0.95183 0.89440 0.94713 1.22243 0.96502 0.98831 0.92728 0.89387 1.22020 0.99290 0.92198 0.84971 1.86427 1.92172 1.40401 1.20479 1.22761 0.96851 1.01880 0.94772 1.22692 0.92212 0.98510 0.94634 1.63547 1.29333 1.26705 1.06459 1.19502 0.93627 0.89951 0.88913 1.21587 1.35725 0.97095 1.02484 0.91744 1.25939 0.97069 0.95766 1.00874 1.70097 1.48119 1.10776 1.28363 0.85318 0.78028 0.78859 0.78341 1.18759 1.20231 1.20244 0.92063 0.90064 0.94388 0.93636 0.91636 0.75300 0.89787 0.92238 0.91786 0.93771 0.98025 1.02116 0.92603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.94 9.59 71.98 0.69 -3.25 16 2 C 0.07 2.44 2.52 45.39 0.11 2.55 16 3 H 0.03 1.36 7.50 -2.39 -0.02 1.34 16 4 C -0.08 -2.54 2.71 -9.41 -0.03 -2.57 16 5 H 0.09 2.66 8.06 -2.39 -0.02 2.64 16 6 C 0.09 2.19 6.50 71.98 0.47 2.66 16 7 O -0.59 -12.80 13.62 -148.98 -2.03 -14.83 16 8 C -0.12 -4.11 6.37 31.78 0.20 -3.90 16 9 C 0.05 1.97 5.78 86.65 0.50 2.47 16 10 N -0.54 -24.40 4.96 -865.17 -4.29 -28.69 16 11 C 0.21 11.47 4.82 85.56 0.41 11.88 16 12 C -0.53 -30.91 7.91 25.60 0.20 -30.71 16 13 H 0.06 3.67 6.86 -2.91 -0.02 3.65 16 14 C 0.00 0.10 5.46 84.65 0.46 0.56 16 15 N -0.93 -57.11 13.29 21.45 0.28 -56.82 16 16 Si 0.97 44.96 29.54 68.60 2.03 46.99 16 17 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 18 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 19 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 20 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 21 H 0.08 1.97 7.96 -2.39 -0.02 1.95 16 22 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 23 H 0.05 1.07 7.98 -2.39 -0.02 1.05 16 24 H 0.07 1.29 7.96 -2.39 -0.02 1.27 16 25 H 0.40 4.54 9.12 -74.06 -0.68 3.86 16 26 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 27 H 0.06 1.96 7.92 -2.39 -0.02 1.94 16 28 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 29 H 0.04 2.06 6.48 -2.39 -0.02 2.04 16 30 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 31 H -0.04 -2.32 7.82 -2.39 -0.02 -2.34 16 32 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -67.58 261.08 -0.57 -68.16 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: 0.41 Total: 5.50 kcal Atomic # 6 Polarization: -23.33 SS G_CDS: 3.03 Total: -20.30 kcal Atomic # 7 Polarization: -81.51 SS G_CDS: -4.01 Total: -85.51 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: -2.03 Total: -14.83 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -67.58 -0.57 -68.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307141137.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.635 kcal (2) G-P(sol) polarization free energy of solvation -67.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds