Wall clock time and date at job start Mon Mar 30 2020 02:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.48930 * 2 1 4 4 C 1.53090 * 109.48304 * 239.96806 * 2 1 3 5 5 C 1.53176 * 109.16668 * 182.40914 * 4 2 1 6 6 H 1.09005 * 109.54225 * 297.11519 * 5 4 2 7 7 C 1.52994 * 109.54603 * 176.84804 * 5 4 2 8 8 N 1.46501 * 109.47324 * 175.44463 * 7 5 4 9 9 C 1.36935 * 120.00228 * 180.02562 * 8 7 5 10 10 H 1.07992 * 120.00174 * 359.97438 * 9 8 7 11 11 C 1.38813 * 119.99792 * 180.02562 * 9 8 7 12 12 N 1.31617 * 120.00352 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99797 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47406 * 59.99616 * 13 11 9 15 15 H 1.48501 * 109.47007 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.46781 * 299.99544 * 13 11 9 17 17 C 1.53181 * 109.03564 * 56.97896 * 5 4 2 18 18 C 1.53096 * 109.16280 * 303.02405 * 17 5 4 19 19 O 1.42902 * 109.47734 * 120.02860 * 2 1 3 20 20 H 1.08997 * 109.47579 * 299.97356 * 1 2 3 21 21 H 1.09002 * 109.47002 * 59.97769 * 1 2 3 22 22 H 1.09006 * 109.47335 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.52564 * 302.31806 * 4 2 1 24 24 H 1.08998 * 109.52249 * 62.43969 * 4 2 1 25 25 H 1.08995 * 109.47540 * 295.44470 * 7 5 4 26 26 H 1.09002 * 109.47335 * 55.44581 * 7 5 4 27 27 H 0.97009 * 119.99557 * 359.97438 * 8 7 5 28 28 H 0.97004 * 120.00069 * 180.02562 * 12 11 9 29 29 H 1.08998 * 109.52547 * 183.11606 * 17 5 4 30 30 H 1.09004 * 109.52249 * 62.92485 * 17 5 4 31 31 H 1.08996 * 109.47593 * 177.59033 * 18 17 5 32 32 H 1.08997 * 109.48187 * 297.62027 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0406 -0.7223 -1.2495 5 6 3.5711 -0.7710 -1.2121 6 1 3.9690 0.2435 -1.2408 7 6 4.0878 -1.5595 -2.4170 8 7 5.5519 -1.5131 -2.4397 9 6 6.2419 -2.1526 -3.4348 10 1 5.7068 -2.6915 -4.2026 11 6 7.6291 -2.1090 -3.4559 12 7 8.2813 -1.4527 -2.5199 13 14 8.5704 -2.9808 -4.8137 14 1 8.1737 -2.4196 -6.1301 15 1 10.0282 -2.7833 -4.6109 16 1 8.2575 -4.4321 -4.7797 17 6 4.0177 -1.4601 0.0810 18 6 3.4307 -0.7092 1.2792 19 8 2.0065 -0.6742 1.1664 20 1 -0.3634 0.5134 0.8902 21 1 -0.3633 0.5142 -0.8898 22 1 -0.3634 -1.0277 -0.0005 23 1 1.6443 -1.7376 -1.2709 24 1 1.7140 -0.1850 -2.1398 25 1 3.7583 -2.5958 -2.3416 26 1 3.6961 -1.1197 -3.3342 27 1 6.0325 -1.0287 -1.7502 28 1 9.2508 -1.4220 -2.5349 29 1 5.1059 -1.4498 0.1423 30 1 3.6613 -2.4902 0.0866 31 1 3.7099 -1.2202 2.2005 32 1 3.8192 0.3090 1.2959 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307186821.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:25 Heat of formation + Delta-G solvation = -56.706308 kcal Electronic energy + Delta-G solvation = -13021.375101 eV Core-core repulsion = 10788.422162 eV Total energy + Delta-G solvation = -2232.952939 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.32561 -35.48714 -33.07726 -32.54846 -30.36703 -27.86091 -25.66853 -23.17811 -22.69202 -20.80178 -19.71984 -17.08465 -16.12364 -15.54769 -14.96044 -14.49784 -14.10716 -13.89624 -13.19992 -12.89502 -12.41912 -12.33427 -12.09249 -11.62254 -11.54783 -10.94092 -10.89769 -10.79799 -10.43517 -10.27568 -10.10943 -9.94133 -9.66208 -9.12671 -8.84464 -6.89248 -5.74701 -3.02832 3.45442 3.49420 3.50746 3.93327 4.59873 4.87963 5.04976 5.15370 5.26192 5.34888 5.51698 5.59240 5.63738 5.66428 5.74091 5.83042 6.03422 6.09206 6.15492 6.21545 6.28233 6.37177 6.53926 6.65789 6.82196 6.96540 7.42858 7.71385 8.44724 9.55534 10.14316 10.49266 11.48414 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.075135 B = 0.007099 C = 0.006679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 372.574076 B = 3943.150852 C = 4191.094274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.086 3.914 3 H 0.054 0.946 4 C -0.141 4.141 5 C -0.096 4.096 6 H 0.069 0.931 7 C 0.159 3.841 8 N -0.732 5.732 9 C -0.239 4.239 10 H 0.069 0.931 11 C -0.015 4.015 12 N -0.936 5.936 13 Si 0.908 3.092 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 C -0.145 4.145 18 C 0.062 3.938 19 O -0.386 6.386 20 H 0.059 0.941 21 H 0.068 0.932 22 H 0.062 0.938 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.019 0.981 26 H 0.018 0.982 27 H 0.383 0.617 28 H 0.255 0.745 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.608 2.907 5.536 14.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.028 3.972 3 H 0.072 0.928 4 C -0.179 4.179 5 C -0.115 4.115 6 H 0.087 0.913 7 C 0.032 3.968 8 N -0.376 5.376 9 C -0.370 4.370 10 H 0.087 0.913 11 C -0.211 4.211 12 N -0.584 5.584 13 Si 0.739 3.261 14 H -0.213 1.213 15 H -0.217 1.217 16 H -0.213 1.213 17 C -0.183 4.183 18 C -0.015 4.015 19 O -0.306 6.306 20 H 0.078 0.922 21 H 0.087 0.913 22 H 0.081 0.919 23 H 0.088 0.912 24 H 0.089 0.911 25 H 0.036 0.964 26 H 0.035 0.965 27 H 0.217 0.783 28 H 0.065 0.935 29 H 0.101 0.899 30 H 0.086 0.914 31 H 0.108 0.892 32 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.685 2.727 5.522 14.101 hybrid contribution 1.035 -0.224 -0.778 1.315 sum -11.650 2.503 4.744 12.825 Atomic orbital electron populations 1.21759 0.93569 1.02722 1.01999 1.22065 0.94527 0.94994 0.85586 0.92777 1.22210 0.96264 1.01648 0.97774 1.21366 0.94070 1.00125 0.95958 0.91270 1.20659 0.86125 0.96243 0.93792 1.42373 0.99575 1.63549 1.32150 1.19208 0.89126 1.25129 1.03571 0.91291 1.24733 0.96377 1.01119 0.98829 1.69647 1.07084 1.46735 1.34975 0.86254 0.78987 0.79329 0.81548 1.21302 1.21674 1.21281 1.22178 1.02156 0.99907 0.94044 1.22609 0.80482 0.99582 0.98789 1.87861 1.21570 1.78136 1.43011 0.92225 0.91271 0.91927 0.91159 0.91146 0.96363 0.96458 0.78291 0.93488 0.89890 0.91395 0.89227 0.93489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.56 37.16 0.36 -1.15 16 2 C 0.09 1.12 3.26 -26.68 -0.09 1.04 16 3 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 4 C -0.14 -1.99 4.70 -26.59 -0.13 -2.11 16 5 C -0.10 -1.64 2.31 -90.44 -0.21 -1.85 16 6 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 7 C 0.16 3.34 5.66 -4.04 -0.02 3.32 16 8 N -0.73 -19.02 5.36 -59.91 -0.32 -19.35 16 9 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 10 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 11 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 12 N -0.94 -28.65 13.06 55.49 0.72 -27.92 16 13 Si 0.91 22.72 29.55 -169.99 -5.02 17.69 16 14 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 15 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 16 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 17 C -0.15 -2.41 5.25 -26.59 -0.14 -2.55 16 18 C 0.06 0.88 6.84 37.21 0.25 1.14 16 19 O -0.39 -5.75 10.41 -35.23 -0.37 -6.12 16 20 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 21 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 24 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.38 10.35 6.87 -40.82 -0.28 10.07 16 28 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 29 H 0.08 1.53 7.28 -51.93 -0.38 1.15 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 31 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 260.79 15.07 3.93 3.93 Total: -1.00 -30.84 260.79 -6.55 -37.39 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -5.28 Total: 4.09 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: -0.22 Total: -9.71 kcal Atomic # 7 Polarization: -47.67 SS G_CDS: 0.40 Total: -47.27 kcal Atomic # 8 Polarization: -5.75 SS G_CDS: -0.37 Total: -6.12 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -30.84 -6.55 -37.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307186821.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.316 kcal (2) G-P(sol) polarization free energy of solvation -30.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds