Wall clock time and date at job start Mon Mar 30 2020 02:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.49894 * 2 1 4 4 C 1.53041 * 109.50217 * 239.92022 * 2 1 3 5 5 N 1.46841 * 109.52168 * 180.83960 * 4 2 1 6 6 C 1.46903 * 111.00024 * 185.84134 * 5 4 2 7 7 C 1.46846 * 111.20196 * 61.73917 * 5 4 2 8 8 C 1.53038 * 109.52692 * 298.26173 * 7 5 4 9 9 H 1.08994 * 109.49788 * 299.19421 * 8 7 5 10 10 C 1.50695 * 109.50296 * 179.11388 * 8 7 5 11 11 H 1.07998 * 119.99955 * 245.41870 * 10 8 7 12 12 C 1.37877 * 119.99971 * 65.42748 * 10 8 7 13 13 N 1.31513 * 119.99977 * 187.09756 * 12 10 8 14 14 Si 1.86799 * 120.00209 * 7.09357 * 12 10 8 15 15 H 1.48501 * 109.47256 * 270.00396 * 14 12 10 16 16 H 1.48492 * 109.47099 * 150.00136 * 14 12 10 17 17 H 1.48503 * 109.46927 * 30.00446 * 14 12 10 18 18 C 1.53118 * 109.53573 * 120.05710 * 2 1 3 19 19 H 1.09004 * 109.49501 * 57.69314 * 18 2 1 20 20 O 1.42902 * 109.55973 * 297.49953 * 18 2 1 21 21 H 1.09000 * 109.47064 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.47082 * 300.07587 * 1 2 3 23 23 H 1.08993 * 109.47388 * 60.07806 * 1 2 3 24 24 H 1.09003 * 109.45885 * 60.82588 * 4 2 1 25 25 H 1.08997 * 109.45341 * 300.85381 * 4 2 1 26 26 H 1.08995 * 109.47012 * 299.74437 * 6 5 4 27 27 H 1.08993 * 109.46941 * 59.74525 * 6 5 4 28 28 H 1.09001 * 109.47109 * 179.74408 * 6 5 4 29 29 H 1.09000 * 109.47047 * 178.23940 * 7 5 4 30 30 H 1.09005 * 109.45559 * 58.27460 * 7 5 4 31 31 H 0.97004 * 119.99925 * 354.91003 * 13 12 10 32 32 H 0.96703 * 113.99434 * 60.30263 * 20 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0409 -0.7230 -1.2483 5 7 3.5092 -0.7409 -1.2386 6 6 4.0371 -1.3042 -2.4885 7 6 4.0238 -1.4715 -0.0734 8 6 3.5720 -0.7709 1.2100 9 1 3.9687 0.2442 1.2293 10 6 4.0821 -1.5333 2.4056 11 1 3.3858 -2.0152 3.0759 12 6 5.4376 -1.6153 2.6439 13 7 5.8909 -2.3931 3.6027 14 14 6.6305 -0.6219 1.6049 15 1 7.0416 -1.4211 0.4227 16 1 7.8285 -0.2831 2.4142 17 1 5.9696 0.6283 1.1517 18 6 2.0420 -0.7228 1.2490 19 1 1.6461 -1.7381 1.2697 20 8 1.6161 -0.0189 2.4174 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5150 0.8893 23 1 -0.3634 0.5126 -0.8906 24 1 1.6899 -0.2019 -2.1390 25 1 1.6653 -1.7462 -1.2545 26 1 3.6797 -2.3272 -2.6054 27 1 3.6968 -0.7019 -3.3307 28 1 5.1267 -1.3014 -2.4566 29 1 5.1129 -1.4942 -0.1107 30 1 3.6389 -2.4912 -0.0853 31 1 5.2695 -2.8516 4.1897 32 1 0.6556 0.0499 2.5068 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307260115.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:31 Heat of formation + Delta-G solvation = -83.654769 kcal Electronic energy + Delta-G solvation = -13729.872835 eV Core-core repulsion = 11495.751323 eV Total energy + Delta-G solvation = -2234.121512 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.52983 -37.35539 -35.41054 -33.91367 -32.56835 -27.90878 -27.06451 -26.34528 -22.92284 -22.22093 -20.68707 -19.61824 -18.34548 -16.66618 -16.27027 -16.03618 -15.43498 -15.38251 -14.60187 -14.44097 -14.04207 -13.43096 -13.34643 -13.20738 -12.95287 -12.79598 -12.40614 -12.26286 -12.01355 -11.73239 -11.64127 -11.10965 -10.92031 -10.68939 -10.45813 -9.27242 -8.73411 -6.38909 1.38311 1.51162 1.70708 2.43792 2.95708 3.14993 3.52180 3.81068 3.94588 4.04575 4.32314 4.41168 4.45860 4.55086 4.61842 4.70015 4.77730 4.82664 4.95576 4.99961 5.05492 5.14867 5.25315 5.32285 5.56508 5.82987 6.01971 6.19304 6.25554 6.55493 7.02906 7.39292 8.64139 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.032745 B = 0.015642 C = 0.011670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.886471 B = 1789.628863 C = 2398.693120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.119 4.119 3 H 0.073 0.927 4 C 0.067 3.933 5 N -0.562 5.562 6 C 0.023 3.977 7 C 0.069 3.931 8 C 0.020 3.980 9 H 0.026 0.974 10 C -0.578 4.578 11 H 0.015 0.985 12 C -0.028 4.028 13 N -0.947 5.947 14 Si 1.091 2.909 15 H -0.259 1.259 16 H -0.289 1.289 17 H -0.258 1.258 18 C 0.127 3.873 19 H 0.026 0.974 20 O -0.575 6.575 21 H 0.056 0.944 22 H 0.065 0.935 23 H 0.080 0.920 24 H 0.103 0.897 25 H 0.030 0.970 26 H 0.026 0.974 27 H 0.093 0.907 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.017 0.983 31 H 0.250 0.750 32 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.151 4.707 -13.278 16.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.138 4.138 3 H 0.091 0.909 4 C -0.061 4.061 5 N -0.287 5.287 6 C -0.125 4.125 7 C -0.059 4.059 8 C 0.001 3.999 9 H 0.044 0.956 10 C -0.617 4.617 11 H 0.033 0.967 12 C -0.224 4.224 13 N -0.584 5.584 14 Si 0.914 3.086 15 H -0.184 1.184 16 H -0.216 1.216 17 H -0.183 1.183 18 C 0.068 3.932 19 H 0.044 0.956 20 O -0.381 6.381 21 H 0.075 0.925 22 H 0.084 0.916 23 H 0.099 0.901 24 H 0.121 0.879 25 H 0.048 0.952 26 H 0.045 0.955 27 H 0.111 0.889 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.036 0.964 31 H 0.059 0.941 32 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -6.757 5.500 -13.430 16.008 hybrid contribution -2.353 -1.709 0.988 3.071 sum -9.110 3.791 -12.442 15.880 Atomic orbital electron populations 1.21771 0.92294 1.02364 1.03422 1.21885 0.97484 1.00305 0.94146 0.90861 1.22126 0.86490 0.98874 0.98564 1.62008 1.09116 1.54659 1.02880 1.22440 1.00674 0.97976 0.91381 1.22289 0.98877 0.94522 0.90214 1.19114 0.92535 0.95958 0.92336 0.95582 1.22160 0.93589 1.35149 1.10769 0.96682 1.27229 0.99738 0.96357 0.99080 1.70938 1.37923 1.29273 1.20234 0.83419 0.73841 0.76628 0.74746 1.18403 1.21594 1.18264 1.21758 0.94977 0.92339 0.84142 0.95634 1.86665 1.27275 1.78683 1.45504 0.92483 0.91560 0.90062 0.87912 0.95176 0.95507 0.88882 0.91739 0.92395 0.96450 0.94117 0.77575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.94 71.98 0.64 -2.45 16 2 C -0.12 -3.71 2.61 -10.74 -0.03 -3.74 16 3 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 4 C 0.07 1.95 4.75 86.33 0.41 2.36 16 5 N -0.56 -19.57 4.91 -922.60 -4.53 -24.10 16 6 C 0.02 0.62 9.59 127.69 1.22 1.84 16 7 C 0.07 3.03 4.37 86.33 0.38 3.40 16 8 C 0.02 1.00 1.57 -11.49 -0.02 0.99 16 9 H 0.03 1.39 6.60 -2.39 -0.02 1.37 16 10 C -0.58 -35.04 8.62 25.60 0.22 -34.82 16 11 H 0.01 1.00 7.98 -2.91 -0.02 0.98 16 12 C -0.03 -1.70 5.42 84.65 0.46 -1.24 16 13 N -0.95 -62.13 13.70 21.45 0.29 -61.84 16 14 Si 1.09 53.67 25.41 68.60 1.74 55.41 16 15 H -0.26 -11.50 6.76 99.48 0.67 -10.83 16 16 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 17 H -0.26 -11.97 6.36 99.48 0.63 -11.34 16 18 C 0.13 5.30 2.37 30.68 0.07 5.37 16 19 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 20 O -0.57 -24.41 13.00 -148.98 -1.94 -26.34 16 21 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 22 H 0.07 1.33 6.86 -2.38 -0.02 1.32 16 23 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.10 2.31 8.12 -2.39 -0.02 2.29 16 25 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.06 1.75 8.10 -2.39 -0.02 1.73 16 29 H 0.06 2.64 4.44 -2.39 -0.01 2.63 16 30 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.25 16.67 8.72 -92.71 -0.81 15.86 16 32 H 0.38 11.45 7.49 -74.05 -0.55 10.89 16 Total: -1.00 -72.66 248.92 -0.68 -73.34 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: 0.39 Total: 11.80 kcal Atomic # 6 Polarization: -31.63 SS G_CDS: 3.36 Total: -28.27 kcal Atomic # 7 Polarization: -81.70 SS G_CDS: -4.24 Total: -85.94 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -1.94 Total: -26.34 kcal Atomic # 14 Polarization: 53.67 SS G_CDS: 1.74 Total: 55.41 kcal Total: -72.66 -0.68 -73.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307260115.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.313 kcal (2) G-P(sol) polarization free energy of solvation -72.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds