Wall clock time and date at job start Mon Mar 30 2020 02:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 110.27455 * 2 1 4 4 C 1.54948 * 110.30964 * 237.91479 * 2 1 3 5 5 C 1.55308 * 100.94081 * 204.63868 * 4 2 1 6 6 H 1.09004 * 110.84325 * 275.94222 * 5 4 2 7 7 N 1.46496 * 110.84429 * 152.52819 * 5 4 2 8 8 C 1.46498 * 120.00036 * 301.44731 * 7 5 4 9 9 C 1.36937 * 120.00165 * 121.46074 * 7 5 4 10 10 H 1.07999 * 120.00249 * 23.50142 * 9 7 5 11 11 C 1.38810 * 119.99999 * 203.51773 * 9 7 5 12 12 N 1.31622 * 120.00275 * 15.27362 * 11 9 7 13 13 Si 1.86800 * 119.99898 * 195.28039 * 11 9 7 14 14 H 1.48498 * 109.47161 * 89.99612 * 13 11 9 15 15 H 1.48507 * 109.46980 * 209.99499 * 13 11 9 16 16 H 1.48493 * 109.47157 * 329.99377 * 13 11 9 17 17 C 1.54376 * 102.25203 * 34.13388 * 5 4 2 18 18 H 1.08996 * 109.83596 * 98.15397 * 17 5 4 19 19 C 1.53004 * 109.82957 * 219.04130 * 17 5 4 20 20 O 1.43242 * 107.58787 * 338.64003 * 17 5 4 21 21 H 1.08994 * 109.46676 * 182.08373 * 1 2 3 22 22 H 1.09000 * 109.47170 * 62.08775 * 1 2 3 23 23 H 1.08991 * 109.47373 * 302.08636 * 1 2 3 24 24 H 1.08997 * 111.12717 * 322.55826 * 4 2 1 25 25 H 1.09000 * 111.12447 * 86.71876 * 4 2 1 26 26 H 1.09003 * 109.47108 * 95.22382 * 8 7 5 27 27 H 1.09003 * 109.47391 * 215.22286 * 8 7 5 28 28 H 1.08997 * 109.47515 * 335.22572 * 8 7 5 29 29 H 0.96998 * 120.00328 * 180.02562 * 12 11 9 30 30 H 1.09000 * 109.47398 * 60.00152 * 19 17 5 31 31 H 1.08999 * 109.46915 * 180.02562 * 19 17 5 32 32 H 1.09000 * 109.46634 * 299.99871 * 19 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0678 -0.7719 -1.2312 5 6 3.4700 -1.2018 -0.7201 6 1 4.1974 -0.4031 -0.8654 7 7 3.9111 -2.4323 -1.3814 8 6 3.1033 -3.6500 -1.2771 9 6 5.0787 -2.4445 -2.0968 10 1 5.8504 -1.7198 -1.8833 11 6 5.2702 -3.3881 -3.0967 12 7 4.2451 -4.0678 -3.5653 13 14 6.9829 -3.6934 -3.7771 14 1 7.6467 -4.7606 -2.9863 15 1 6.8830 -4.1185 -5.1965 16 1 7.7803 -2.4438 -3.6897 17 6 3.2113 -1.4427 0.7826 18 1 3.0624 -2.5067 0.9663 19 6 4.4001 -0.9360 1.6017 20 8 2.0286 -0.7178 1.1398 21 1 -0.3632 -1.0270 0.0374 22 1 -0.3633 0.4811 -0.9081 23 1 -0.3633 0.5458 0.8706 24 1 1.4471 -1.6401 -1.4524 25 1 2.1496 -0.1183 -2.0996 26 1 2.4512 -3.7290 -2.1470 27 1 3.7598 -4.5191 -1.2350 28 1 2.4978 -3.6079 -0.3718 29 1 4.3790 -4.7275 -4.2637 30 1 4.5339 0.1314 1.4260 31 1 4.2116 -1.1093 2.6612 32 1 5.3019 -1.4696 1.3014 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307335129.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:54 Heat of formation + Delta-G solvation = -49.827260 kcal Electronic energy + Delta-G solvation = -13558.549512 eV Core-core repulsion = 11325.894871 eV Total energy + Delta-G solvation = -2232.654641 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.72361 -37.07366 -33.75427 -33.46631 -31.35477 -29.27071 -28.08788 -25.49843 -23.91002 -21.93214 -20.83644 -18.93706 -17.73185 -17.12399 -16.28191 -15.51981 -15.33137 -14.70356 -14.59676 -14.17688 -13.75124 -13.57142 -13.25829 -13.01862 -12.76022 -12.64895 -12.51394 -12.36032 -12.14654 -12.00880 -11.84800 -11.67287 -11.45748 -10.63696 -10.35728 -8.79774 -7.85336 -5.35065 1.46421 1.48023 1.56512 2.47876 2.87683 3.26725 3.57127 3.90656 3.96036 4.11724 4.25788 4.32304 4.49268 4.53969 4.69624 4.79955 4.82353 4.92920 4.98994 5.10498 5.18131 5.22629 5.30096 5.34012 5.40706 5.62652 5.64709 6.19274 6.30675 7.10768 7.81220 8.27357 9.17667 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.050481 B = 0.010303 C = 0.009423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.528456 B = 2716.999461 C = 2970.893144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.075 3.925 3 H 0.080 0.920 4 C -0.165 4.165 5 C 0.147 3.853 6 H 0.076 0.924 7 N -0.599 5.599 8 C 0.176 3.824 9 C -0.268 4.268 10 H 0.073 0.927 11 C -0.050 4.050 12 N -0.936 5.936 13 Si 0.969 3.031 14 H -0.287 1.287 15 H -0.295 1.295 16 H -0.267 1.267 17 C 0.059 3.941 18 H 0.063 0.937 19 C -0.144 4.144 20 O -0.392 6.392 21 H 0.050 0.950 22 H 0.083 0.917 23 H 0.071 0.929 24 H 0.058 0.942 25 H 0.075 0.925 26 H 0.007 0.993 27 H 0.015 0.985 28 H 0.028 0.972 29 H 0.249 0.751 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.572 7.178 6.835 10.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.018 3.982 3 H 0.098 0.902 4 C -0.205 4.205 5 C 0.038 3.962 6 H 0.094 0.906 7 N -0.321 5.321 8 C 0.031 3.969 9 C -0.398 4.398 10 H 0.091 0.909 11 C -0.246 4.246 12 N -0.581 5.581 13 Si 0.798 3.202 14 H -0.213 1.213 15 H -0.222 1.222 16 H -0.191 1.191 17 C 0.000 4.000 18 H 0.081 0.919 19 C -0.202 4.202 20 O -0.312 6.312 21 H 0.069 0.931 22 H 0.102 0.898 23 H 0.090 0.910 24 H 0.077 0.923 25 H 0.093 0.907 26 H 0.026 0.974 27 H 0.034 0.966 28 H 0.046 0.954 29 H 0.058 0.942 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.656 7.053 6.913 10.531 hybrid contribution 0.861 -0.631 -0.931 1.416 sum -2.796 6.421 5.983 9.211 Atomic orbital electron populations 1.21850 0.92471 1.02429 1.03224 1.22992 0.95778 0.95259 0.84173 0.90202 1.23713 0.98178 1.00128 0.98453 1.22063 0.94634 0.88937 0.90517 0.90566 1.43984 1.24194 1.05696 1.58200 1.20491 0.93311 0.87590 0.95495 1.19554 0.92964 1.15857 1.11397 0.90912 1.25801 1.00737 1.00686 0.97339 1.70236 1.30008 1.28216 1.29689 0.85232 0.79995 0.78284 0.76729 1.21339 1.22205 1.19108 1.23155 0.85641 0.95477 0.95734 0.91874 1.21948 0.96661 1.01539 1.00028 1.88339 1.42666 1.65139 1.35017 0.93093 0.89838 0.90997 0.92307 0.90653 0.97433 0.96636 0.95386 0.94197 0.91785 0.91550 0.92096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.54 9.62 71.98 0.69 -2.85 16 2 C 0.08 2.30 4.07 31.26 0.13 2.42 16 3 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 4 C -0.16 -6.08 6.14 32.05 0.20 -5.88 16 5 C 0.15 6.06 3.01 46.25 0.14 6.20 16 6 H 0.08 3.11 7.65 -2.39 -0.02 3.09 16 7 N -0.60 -30.14 2.94 -695.76 -2.05 -32.19 16 8 C 0.18 8.89 7.71 127.77 0.98 9.87 16 9 C -0.27 -14.63 9.59 84.03 0.81 -13.82 16 10 H 0.07 3.83 7.86 -2.91 -0.02 3.81 16 11 C -0.05 -2.80 5.05 84.86 0.43 -2.37 16 12 N -0.94 -55.43 10.87 21.65 0.24 -55.20 16 13 Si 0.97 44.83 29.58 68.60 2.03 46.86 16 14 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 15 H -0.30 -13.76 7.11 99.48 0.71 -13.06 16 16 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 17 C 0.06 2.18 3.68 31.06 0.11 2.30 16 18 H 0.06 2.54 6.12 -2.39 -0.01 2.53 16 19 C -0.14 -4.54 9.44 71.98 0.68 -3.86 16 20 O -0.39 -13.68 10.70 -148.98 -1.59 -15.27 16 21 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 22 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 23 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 24 H 0.06 2.37 7.20 -2.39 -0.02 2.36 16 25 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 26 H 0.01 0.41 7.32 -2.39 -0.02 0.39 16 27 H 0.01 0.82 7.44 -2.39 -0.02 0.80 16 28 H 0.03 1.25 6.26 -2.39 -0.01 1.23 16 29 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 30 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.07 1.86 8.14 -2.39 -0.02 1.85 16 32 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -61.20 257.03 3.86 -57.34 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: 1.07 Total: 6.45 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: 4.17 Total: -7.99 kcal Atomic # 7 Polarization: -85.57 SS G_CDS: -1.81 Total: -87.38 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -1.59 Total: -15.27 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -61.20 3.86 -57.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307335129.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.510 kcal (2) G-P(sol) polarization free energy of solvation -61.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds