Wall clock time and date at job start Mon Mar 30 2020 02:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 110.55012 * 2 1 4 4 C 1.54993 * 110.61563 * 237.11787 * 2 1 3 5 5 C 1.54810 * 102.09410 * 204.47559 * 4 2 1 6 6 H 1.08998 * 110.49266 * 139.69320 * 5 4 2 7 7 N 1.46498 * 110.49022 * 262.20879 * 5 4 2 8 8 C 1.46508 * 120.00151 * 58.54000 * 7 5 4 9 9 C 1.36937 * 120.00439 * 238.54924 * 7 5 4 10 10 H 1.08008 * 119.99163 * 332.62214 * 9 7 5 11 11 C 1.38805 * 120.00897 * 152.62255 * 9 7 5 12 12 N 1.31618 * 119.99379 * 331.46486 * 11 9 7 13 13 Si 1.86795 * 120.00420 * 151.19388 * 11 9 7 14 14 H 1.48500 * 109.47365 * 180.27623 * 13 11 9 15 15 H 1.48508 * 109.46848 * 300.27468 * 13 11 9 16 16 H 1.48501 * 109.47407 * 60.27170 * 13 11 9 17 17 C 1.54108 * 104.18635 * 20.88017 * 5 4 2 18 18 H 1.09001 * 109.87707 * 242.60829 * 17 5 4 19 19 C 1.52995 * 109.87683 * 121.45561 * 17 5 4 20 20 O 1.43745 * 107.29150 * 2.03388 * 17 5 4 21 21 H 1.09002 * 109.46865 * 182.87997 * 1 2 3 22 22 H 1.09003 * 109.46458 * 302.87945 * 1 2 3 23 23 H 1.09000 * 109.47134 * 62.88263 * 1 2 3 24 24 H 1.09002 * 110.90470 * 86.27787 * 4 2 1 25 25 H 1.09001 * 110.93931 * 322.68538 * 4 2 1 26 26 H 1.08996 * 109.46837 * 274.03769 * 8 7 5 27 27 H 1.08996 * 109.46818 * 34.03638 * 8 7 5 28 28 H 1.09002 * 109.47201 * 154.04119 * 8 7 5 29 29 H 0.97000 * 120.00585 * 353.60345 * 12 11 9 30 30 H 1.09002 * 109.47375 * 59.99839 * 19 17 5 31 31 H 1.08999 * 109.47332 * 180.02562 * 19 17 5 32 32 H 1.09006 * 109.47231 * 300.00013 * 19 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0206 0.0000 4 6 2.0758 -0.7876 -1.2183 5 6 3.4795 -1.2157 -0.7254 6 1 3.6984 -2.2369 -1.0374 7 7 4.5025 -0.2963 -1.2296 8 6 4.4250 1.1317 -0.9114 9 6 5.5312 -0.7715 -1.9985 10 1 5.8616 -1.7937 -1.8863 11 6 6.1492 0.0602 -2.9220 12 7 5.4742 1.0453 -3.4754 13 14 7.9409 -0.2138 -3.3737 14 1 8.3621 0.8051 -4.3685 15 1 8.7823 -0.0939 -2.1558 16 1 8.1029 -1.5704 -3.9556 17 6 3.3840 -1.1266 0.8102 18 1 4.0854 -0.3800 1.1824 19 6 3.6935 -2.4904 1.4306 20 8 2.0384 -0.7370 1.1327 21 1 -0.3633 -1.0264 0.0516 22 1 -0.3632 0.5579 0.8631 23 1 -0.3633 0.4684 -0.9147 24 1 2.1508 -0.1445 -2.0952 25 1 1.4551 -1.6586 -1.4288 26 1 3.7868 1.6320 -1.6396 27 1 4.0065 1.2592 0.0869 28 1 5.4242 1.5661 -0.9447 29 1 4.5226 1.1344 -3.3100 30 1 4.7012 -2.7970 1.1501 31 1 3.6237 -2.4201 2.5161 32 1 2.9757 -3.2261 1.0677 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307335130.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:55 Heat of formation + Delta-G solvation = -35.178572 kcal Electronic energy + Delta-G solvation = -13668.724276 eV Core-core repulsion = 11436.704850 eV Total energy + Delta-G solvation = -2232.019426 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.32858 -35.32755 -32.32333 -31.78092 -29.71604 -27.86202 -26.13472 -23.67226 -21.92485 -20.80216 -19.42191 -17.42186 -16.09559 -15.25166 -14.65183 -14.05032 -13.66027 -13.52555 -12.92639 -12.58812 -12.46801 -12.03457 -11.70834 -11.59839 -11.33490 -10.95695 -10.77517 -10.65916 -10.43592 -10.39653 -10.02363 -10.01210 -9.46437 -9.07930 -8.35333 -6.94506 -6.09104 -3.27083 3.48388 3.52353 3.70145 4.26719 4.57519 5.15105 5.23995 5.30552 5.42475 5.47259 5.61160 5.73221 5.78570 5.89359 5.95373 6.03977 6.13982 6.33735 6.36609 6.44177 6.48872 6.55378 6.67736 6.82020 6.89377 7.07657 7.46361 8.00059 8.54511 9.08977 9.81789 10.22381 11.16667 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.049329 B = 0.010890 C = 0.009658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.478888 B = 2570.433780 C = 2898.403077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.072 3.928 3 H 0.065 0.935 4 C -0.169 4.169 5 C 0.152 3.848 6 H 0.078 0.922 7 N -0.590 5.590 8 C 0.133 3.867 9 C -0.362 4.362 10 H 0.057 0.943 11 C -0.018 4.018 12 N -0.908 5.908 13 Si 1.061 2.939 14 H -0.286 1.286 15 H -0.293 1.293 16 H -0.292 1.292 17 C 0.053 3.947 18 H 0.069 0.931 19 C -0.140 4.140 20 O -0.383 6.383 21 H 0.059 0.941 22 H 0.055 0.945 23 H 0.066 0.934 24 H 0.078 0.922 25 H 0.064 0.936 26 H 0.010 0.990 27 H 0.016 0.984 28 H 0.051 0.949 29 H 0.269 0.731 30 H 0.068 0.932 31 H 0.052 0.948 32 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.887 -2.947 6.260 9.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.014 3.986 3 H 0.083 0.917 4 C -0.209 4.209 5 C 0.043 3.957 6 H 0.096 0.904 7 N -0.312 5.312 8 C -0.013 4.013 9 C -0.490 4.490 10 H 0.075 0.925 11 C -0.222 4.222 12 N -0.546 5.546 13 Si 0.891 3.109 14 H -0.211 1.211 15 H -0.220 1.220 16 H -0.219 1.219 17 C -0.006 4.006 18 H 0.087 0.913 19 C -0.198 4.198 20 O -0.303 6.303 21 H 0.078 0.922 22 H 0.075 0.925 23 H 0.085 0.915 24 H 0.097 0.903 25 H 0.083 0.917 26 H 0.028 0.972 27 H 0.035 0.965 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.689 -2.369 5.555 7.646 hybrid contribution -1.207 -0.562 0.642 1.478 sum -5.896 -2.931 6.196 9.041 Atomic orbital electron populations 1.21754 0.94155 1.02292 1.01697 1.23056 0.94038 0.95544 0.85929 0.91691 1.23683 0.98742 1.00156 0.98342 1.21759 0.87987 0.95425 0.90555 0.90382 1.43990 1.25853 1.02808 1.58582 1.20972 1.00011 0.85163 0.95117 1.19930 1.11033 1.00247 1.17825 0.92537 1.25834 1.05908 0.97170 0.93248 1.70781 1.10081 1.35017 1.38764 0.83592 0.75770 0.75555 0.76016 1.21123 1.22016 1.21933 1.23405 0.83667 0.96229 0.97338 0.91319 1.21813 1.01638 0.96071 1.00278 1.88761 1.28663 1.73560 1.39338 0.92190 0.92547 0.91532 0.90306 0.91697 0.97182 0.96506 0.93056 0.92004 0.91321 0.92925 0.92589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.66 37.16 0.36 -1.62 16 2 C 0.07 1.26 3.55 -25.68 -0.09 1.16 16 3 H 0.07 1.19 6.79 -51.93 -0.35 0.84 16 4 C -0.17 -3.23 5.90 -24.73 -0.15 -3.38 16 5 C 0.15 3.24 3.21 -66.40 -0.21 3.02 16 6 H 0.08 1.69 7.50 -51.93 -0.39 1.30 16 7 N -0.59 -14.75 2.64 -171.73 -0.45 -15.21 16 8 C 0.13 3.18 7.53 59.85 0.45 3.63 16 9 C -0.36 -10.04 9.37 -15.06 -0.14 -10.18 16 10 H 0.06 1.57 7.98 -52.48 -0.42 1.16 16 11 C -0.02 -0.51 4.64 -17.43 -0.08 -0.60 16 12 N -0.91 -27.10 12.80 55.49 0.71 -26.39 16 13 Si 1.06 25.15 30.00 -169.99 -5.10 20.05 16 14 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 15 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 16 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 17 C 0.05 1.02 3.33 -26.15 -0.09 0.93 16 18 H 0.07 1.42 6.66 -51.93 -0.35 1.08 16 19 C -0.14 -2.29 9.36 37.16 0.35 -1.94 16 20 O -0.38 -7.25 10.89 -35.23 -0.38 -7.63 16 21 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 22 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 23 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 24 H 0.08 1.65 8.04 -51.93 -0.42 1.23 16 25 H 0.06 1.13 8.06 -51.93 -0.42 0.71 16 26 H 0.01 0.25 6.94 -51.93 -0.36 -0.11 16 27 H 0.02 0.36 5.63 -51.93 -0.29 0.07 16 28 H 0.05 1.32 7.40 -51.93 -0.38 0.94 16 29 H 0.27 8.09 6.53 -40.82 -0.27 7.82 16 30 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 254.57 15.07 3.84 3.84 Total: -1.00 -29.77 254.57 -5.97 -35.74 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -4.98 Total: -1.41 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: 0.40 Total: -8.98 kcal Atomic # 7 Polarization: -41.85 SS G_CDS: 0.26 Total: -41.59 kcal Atomic # 8 Polarization: -7.25 SS G_CDS: -0.38 Total: -7.63 kcal Atomic # 14 Polarization: 25.15 SS G_CDS: -5.10 Total: 20.05 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -29.77 -5.97 -35.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307335130.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.558 kcal (2) G-P(sol) polarization free energy of solvation -29.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds