Wall clock time and date at job start Mon Mar 30 2020 02:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 110.55012 * 2 1 4 4 C 1.54993 * 110.61563 * 237.11787 * 2 1 3 5 5 C 1.54810 * 102.09410 * 204.47559 * 4 2 1 6 6 H 1.08998 * 110.49266 * 139.69320 * 5 4 2 7 7 N 1.46498 * 110.49022 * 262.20879 * 5 4 2 8 8 C 1.46508 * 120.00151 * 58.54000 * 7 5 4 9 9 C 1.36937 * 120.00439 * 238.54924 * 7 5 4 10 10 H 1.08008 * 119.99163 * 332.62214 * 9 7 5 11 11 C 1.38805 * 120.00897 * 152.62255 * 9 7 5 12 12 N 1.31618 * 119.99379 * 331.46486 * 11 9 7 13 13 Si 1.86795 * 120.00420 * 151.19388 * 11 9 7 14 14 H 1.48500 * 109.47365 * 180.27623 * 13 11 9 15 15 H 1.48508 * 109.46848 * 300.27468 * 13 11 9 16 16 H 1.48501 * 109.47407 * 60.27170 * 13 11 9 17 17 C 1.54108 * 104.18635 * 20.88017 * 5 4 2 18 18 H 1.09001 * 109.87707 * 242.60829 * 17 5 4 19 19 C 1.52995 * 109.87683 * 121.45561 * 17 5 4 20 20 O 1.43745 * 107.29150 * 2.03388 * 17 5 4 21 21 H 1.09002 * 109.46865 * 182.87997 * 1 2 3 22 22 H 1.09003 * 109.46458 * 302.87945 * 1 2 3 23 23 H 1.09000 * 109.47134 * 62.88263 * 1 2 3 24 24 H 1.09002 * 110.90470 * 86.27787 * 4 2 1 25 25 H 1.09001 * 110.93931 * 322.68538 * 4 2 1 26 26 H 1.08996 * 109.46837 * 274.03769 * 8 7 5 27 27 H 1.08996 * 109.46818 * 34.03638 * 8 7 5 28 28 H 1.09002 * 109.47201 * 154.04119 * 8 7 5 29 29 H 0.97000 * 120.00585 * 353.60345 * 12 11 9 30 30 H 1.09002 * 109.47375 * 59.99839 * 19 17 5 31 31 H 1.08999 * 109.47332 * 180.02562 * 19 17 5 32 32 H 1.09006 * 109.47231 * 300.00013 * 19 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0206 0.0000 4 6 2.0758 -0.7876 -1.2183 5 6 3.4795 -1.2157 -0.7254 6 1 3.6984 -2.2369 -1.0374 7 7 4.5025 -0.2963 -1.2296 8 6 4.4250 1.1317 -0.9114 9 6 5.5312 -0.7715 -1.9985 10 1 5.8616 -1.7937 -1.8863 11 6 6.1492 0.0602 -2.9220 12 7 5.4742 1.0453 -3.4754 13 14 7.9409 -0.2138 -3.3737 14 1 8.3621 0.8051 -4.3685 15 1 8.7823 -0.0939 -2.1558 16 1 8.1029 -1.5704 -3.9556 17 6 3.3840 -1.1266 0.8102 18 1 4.0854 -0.3800 1.1824 19 6 3.6935 -2.4904 1.4306 20 8 2.0384 -0.7370 1.1327 21 1 -0.3633 -1.0264 0.0516 22 1 -0.3632 0.5579 0.8631 23 1 -0.3633 0.4684 -0.9147 24 1 2.1508 -0.1445 -2.0952 25 1 1.4551 -1.6586 -1.4288 26 1 3.7868 1.6320 -1.6396 27 1 4.0065 1.2592 0.0869 28 1 5.4242 1.5661 -0.9447 29 1 4.5226 1.1344 -3.3100 30 1 4.7012 -2.7970 1.1501 31 1 3.6237 -2.4201 2.5161 32 1 2.9757 -3.2261 1.0677 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307335130.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:55 Heat of formation + Delta-G solvation = -53.651226 kcal Electronic energy + Delta-G solvation = -13669.525310 eV Core-core repulsion = 11436.704850 eV Total energy + Delta-G solvation = -2232.820460 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.89942 -37.24081 -33.82414 -33.53164 -31.43670 -29.31725 -28.15791 -25.36715 -23.68365 -22.23835 -21.13813 -19.47388 -17.74629 -16.76510 -16.33107 -15.82836 -15.45586 -15.34877 -14.55667 -14.04932 -13.93781 -13.53863 -13.19860 -12.91122 -12.86595 -12.82727 -12.53650 -12.50013 -12.08103 -11.95762 -11.88962 -11.60842 -11.42803 -10.60139 -10.45362 -9.01271 -8.28000 -5.45142 1.57911 1.64889 1.84129 2.61701 2.83555 3.15567 3.46358 3.77673 3.84300 3.99850 4.19159 4.22002 4.37369 4.47635 4.55824 4.66404 4.69669 4.79265 4.86078 4.94394 4.99514 5.06557 5.13714 5.18942 5.24935 5.28009 5.80391 5.99188 6.34782 7.00925 7.72595 8.13445 8.94730 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.049329 B = 0.010890 C = 0.009658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.478888 B = 2570.433780 C = 2898.403077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.072 3.928 3 H 0.053 0.947 4 C -0.162 4.162 5 C 0.142 3.858 6 H 0.072 0.928 7 N -0.605 5.605 8 C 0.149 3.851 9 C -0.367 4.367 10 H 0.053 0.947 11 C -0.068 4.068 12 N -0.934 5.934 13 Si 1.111 2.889 14 H -0.292 1.292 15 H -0.281 1.281 16 H -0.274 1.274 17 C 0.059 3.941 18 H 0.051 0.949 19 C -0.135 4.135 20 O -0.384 6.384 21 H 0.068 0.932 22 H 0.069 0.931 23 H 0.080 0.920 24 H 0.055 0.945 25 H 0.085 0.915 26 H -0.003 1.003 27 H 0.039 0.961 28 H 0.025 0.975 29 H 0.255 0.745 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.381 -3.896 7.163 10.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.014 3.986 3 H 0.071 0.929 4 C -0.202 4.202 5 C 0.034 3.966 6 H 0.090 0.910 7 N -0.328 5.328 8 C 0.004 3.996 9 C -0.497 4.497 10 H 0.071 0.929 11 C -0.266 4.266 12 N -0.575 5.575 13 Si 0.936 3.064 14 H -0.218 1.218 15 H -0.207 1.207 16 H -0.200 1.200 17 C 0.000 4.000 18 H 0.069 0.931 19 C -0.192 4.192 20 O -0.304 6.304 21 H 0.087 0.913 22 H 0.088 0.912 23 H 0.099 0.901 24 H 0.074 0.926 25 H 0.103 0.897 26 H 0.015 0.985 27 H 0.057 0.943 28 H 0.044 0.956 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.213 -3.344 6.487 8.968 hybrid contribution -1.111 -0.288 0.399 1.215 sum -6.324 -3.632 6.886 10.030 Atomic orbital electron populations 1.21737 0.91000 1.03341 1.03125 1.23147 0.96460 0.94407 0.84560 0.92870 1.23571 0.97796 1.00713 0.98148 1.21955 0.88238 0.94286 0.92111 0.91016 1.44149 1.26686 1.03459 1.58487 1.20748 0.98304 0.84726 0.95850 1.20173 1.11775 1.00200 1.17517 0.92911 1.27173 1.09135 0.96902 0.93393 1.70904 1.09398 1.36565 1.40643 0.82918 0.71406 0.76059 0.76063 1.21830 1.20687 1.19974 1.23251 0.83732 0.97496 0.95562 0.93063 1.21770 1.01842 0.94357 1.01225 1.88771 1.28186 1.73637 1.39804 0.91306 0.91190 0.90119 0.92610 0.89691 0.98488 0.94251 0.95564 0.93514 0.91459 0.91162 0.91433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.38 9.66 71.98 0.70 -2.69 16 2 C 0.07 2.38 3.55 31.28 0.11 2.49 16 3 H 0.05 1.90 6.79 -2.39 -0.02 1.88 16 4 C -0.16 -6.05 5.90 31.89 0.19 -5.87 16 5 C 0.14 5.96 3.21 45.98 0.15 6.11 16 6 H 0.07 3.07 7.50 -2.39 -0.02 3.05 16 7 N -0.60 -30.48 2.64 -697.23 -1.84 -32.33 16 8 C 0.15 7.27 7.53 127.77 0.96 8.23 16 9 C -0.37 -20.52 9.37 84.03 0.79 -19.74 16 10 H 0.05 2.94 7.98 -2.91 -0.02 2.92 16 11 C -0.07 -3.88 4.64 84.86 0.39 -3.48 16 12 N -0.93 -56.84 12.80 21.65 0.28 -56.56 16 13 Si 1.11 50.71 30.00 68.60 2.06 52.77 16 14 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 15 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 16 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 17 C 0.06 2.18 3.33 30.97 0.10 2.28 16 18 H 0.05 2.08 6.66 -2.39 -0.02 2.07 16 19 C -0.13 -4.08 9.36 71.98 0.67 -3.41 16 20 O -0.38 -13.68 10.89 -148.98 -1.62 -15.30 16 21 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 22 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 23 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 24 H 0.06 2.34 8.04 -2.39 -0.02 2.32 16 25 H 0.08 2.80 8.06 -2.39 -0.02 2.78 16 26 H 0.00 -0.15 6.94 -2.39 -0.02 -0.17 16 27 H 0.04 1.70 5.63 -2.39 -0.01 1.69 16 28 H 0.03 1.37 7.40 -2.39 -0.02 1.35 16 29 H 0.25 15.80 6.53 -92.71 -0.61 15.20 16 30 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 Total: -1.00 -63.06 254.57 4.17 -58.89 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: 1.24 Total: 8.60 kcal Atomic # 6 Polarization: -20.13 SS G_CDS: 4.06 Total: -16.07 kcal Atomic # 7 Polarization: -87.33 SS G_CDS: -1.56 Total: -88.89 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -1.62 Total: -15.30 kcal Atomic # 14 Polarization: 50.71 SS G_CDS: 2.06 Total: 52.77 kcal Total: -63.06 4.17 -58.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307335130.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.240 kcal (2) G-P(sol) polarization free energy of solvation -63.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds