Wall clock time and date at job start Mon Mar 30 2020 02:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 110.54610 * 2 1 4 4 C 1.54990 * 110.62115 * 237.12163 * 2 1 3 5 5 C 1.54806 * 102.09238 * 204.47547 * 4 2 1 6 6 H 1.09001 * 110.48775 * 262.07062 * 5 4 2 7 7 N 1.46505 * 110.48851 * 139.55551 * 5 4 2 8 8 C 1.46492 * 119.99909 * 353.38346 * 7 5 4 9 9 C 1.36939 * 119.99630 * 173.38056 * 7 5 4 10 10 H 1.07995 * 120.00191 * 335.64482 * 9 7 5 11 11 C 1.38818 * 119.99519 * 155.64380 * 9 7 5 12 12 N 1.31615 * 120.00028 * 350.93655 * 11 9 7 13 13 Si 1.86800 * 119.99739 * 170.93063 * 11 9 7 14 14 H 1.48497 * 109.46775 * 179.97438 * 13 11 9 15 15 H 1.48493 * 109.47266 * 300.00383 * 13 11 9 16 16 H 1.48502 * 109.46905 * 60.00378 * 13 11 9 17 17 C 1.54098 * 104.30670 * 20.80996 * 5 4 2 18 18 H 1.08991 * 109.88038 * 242.67190 * 17 5 4 19 19 C 1.53004 * 109.87805 * 121.52058 * 17 5 4 20 20 O 1.44055 * 107.13490 * 2.13643 * 17 5 4 21 21 H 1.09010 * 109.46912 * 182.87985 * 1 2 3 22 22 H 1.08999 * 109.47678 * 302.87849 * 1 2 3 23 23 H 1.08995 * 109.47103 * 62.88414 * 1 2 3 24 24 H 1.09003 * 110.91154 * 86.27299 * 4 2 1 25 25 H 1.09009 * 110.93593 * 322.68553 * 4 2 1 26 26 H 1.09004 * 109.47038 * 275.80161 * 8 7 5 27 27 H 1.08995 * 109.47749 * 35.80145 * 8 7 5 28 28 H 1.09003 * 109.47520 * 155.80919 * 8 7 5 29 29 H 0.97003 * 120.00071 * 180.02562 * 12 11 9 30 30 H 1.08998 * 109.46794 * 67.74851 * 19 17 5 31 31 H 1.08998 * 109.47329 * 187.75003 * 19 17 5 32 32 H 1.08994 * 109.47206 * 307.75017 * 19 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0206 0.0000 4 6 2.0759 -0.7875 -1.2182 5 6 3.4795 -1.2155 -0.7252 6 1 4.2409 -0.5328 -1.1023 7 7 3.7726 -2.5891 -1.1420 8 6 2.7346 -3.3956 -1.7887 9 6 5.0168 -3.1191 -0.9270 10 1 5.8721 -2.4670 -0.8300 11 6 5.1785 -4.4947 -0.8336 12 7 4.1232 -5.2787 -0.7724 13 14 6.8941 -5.2328 -0.7950 14 1 6.7947 -6.7109 -0.6922 15 1 7.6171 -4.8702 -2.0403 16 1 7.6341 -4.7041 0.3789 17 6 3.3875 -1.1257 0.8104 18 1 4.0892 -0.3785 1.1807 19 6 3.6995 -2.4891 1.4309 20 8 2.0384 -0.7369 1.1327 21 1 -0.3633 -1.0265 0.0516 22 1 -0.3634 0.5578 0.8630 23 1 -0.3633 0.4684 -0.9147 24 1 2.1510 -0.1445 -2.0952 25 1 1.4552 -1.6585 -1.4289 26 1 2.1068 -3.8583 -1.0271 27 1 2.1222 -2.7570 -2.4253 28 1 3.2022 -4.1716 -2.3947 29 1 4.2362 -6.2399 -0.7068 30 1 4.7489 -2.7322 1.2647 31 1 3.4995 -2.4553 2.5018 32 1 3.0723 -3.2510 0.9681 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307335132.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:58 Heat of formation + Delta-G solvation = -15.255888 kcal Electronic energy + Delta-G solvation = -13853.843150 eV Core-core repulsion = 11622.687637 eV Total energy + Delta-G solvation = -2231.155514 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.12882 -35.29505 -32.05948 -31.63233 -29.15909 -27.93571 -25.94122 -23.84797 -21.72313 -20.65470 -18.95584 -16.68078 -16.09414 -15.13009 -14.81307 -14.07944 -13.74869 -13.18119 -12.70974 -12.52396 -11.92529 -11.77997 -11.23204 -11.14179 -11.01820 -10.85966 -10.65178 -10.34830 -10.33398 -10.07945 -9.88132 -9.79713 -9.64806 -8.86058 -8.39596 -6.67478 -5.73118 -3.17489 3.38551 3.44527 3.44760 4.43506 4.51226 5.21183 5.29959 5.41360 5.50875 5.58469 5.81189 5.88952 5.94843 6.10085 6.16486 6.35030 6.42159 6.49291 6.63768 6.77735 6.82690 6.98228 7.23925 7.42681 7.70766 7.74910 7.79356 7.86679 8.42804 9.25085 9.86439 10.37730 11.32578 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.059375 B = 0.011173 C = 0.010563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.466764 B = 2505.498926 C = 2650.117904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.071 3.929 3 H 0.058 0.942 4 C -0.163 4.163 5 C 0.149 3.851 6 H 0.049 0.951 7 N -0.589 5.589 8 C 0.159 3.841 9 C -0.247 4.247 10 H 0.065 0.935 11 C 0.004 3.996 12 N -0.904 5.904 13 Si 0.902 3.098 14 H -0.291 1.291 15 H -0.285 1.285 16 H -0.283 1.283 17 C 0.055 3.945 18 H 0.045 0.955 19 C -0.123 4.123 20 O -0.381 6.381 21 H 0.062 0.938 22 H 0.055 0.945 23 H 0.064 0.936 24 H 0.067 0.933 25 H 0.092 0.908 26 H 0.015 0.985 27 H -0.002 1.002 28 H 0.063 0.937 29 H 0.253 0.747 30 H 0.082 0.918 31 H 0.019 0.981 32 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.006 7.752 -0.208 8.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.013 3.987 3 H 0.076 0.924 4 C -0.200 4.200 5 C 0.041 3.959 6 H 0.066 0.934 7 N -0.313 5.313 8 C 0.015 3.985 9 C -0.377 4.377 10 H 0.083 0.917 11 C -0.194 4.194 12 N -0.549 5.549 13 Si 0.732 3.268 14 H -0.216 1.216 15 H -0.212 1.212 16 H -0.209 1.209 17 C -0.004 4.004 18 H 0.063 0.937 19 C -0.180 4.180 20 O -0.301 6.301 21 H 0.082 0.918 22 H 0.074 0.926 23 H 0.082 0.918 24 H 0.086 0.914 25 H 0.111 0.889 26 H 0.033 0.967 27 H 0.016 0.984 28 H 0.082 0.918 29 H 0.064 0.936 30 H 0.101 0.899 31 H 0.038 0.962 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.126 7.488 -0.026 8.550 hybrid contribution 1.095 -0.379 -0.035 1.159 sum -3.031 7.109 -0.060 7.728 Atomic orbital electron populations 1.21734 0.94082 1.02708 1.01395 1.22927 0.94424 0.94777 0.86552 0.92442 1.23570 0.98253 1.00851 0.97364 1.21735 0.93722 0.88818 0.91635 0.93371 1.43874 1.10864 1.09048 1.67498 1.20881 0.90354 0.92619 0.94684 1.18991 0.84608 0.90153 1.43952 0.91677 1.24993 0.96857 0.96755 1.00809 1.70031 1.27200 1.03460 1.54199 0.86373 0.84255 0.78125 0.78023 1.21637 1.21155 1.20946 1.23625 0.82065 0.96854 0.97898 0.93743 1.21736 1.04608 0.95377 0.96260 1.88881 1.29444 1.73236 1.38522 0.91844 0.92563 0.91753 0.91405 0.88926 0.96699 0.98397 0.91803 0.93648 0.89891 0.96225 0.90211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.66 37.16 0.36 -1.61 16 2 C 0.07 1.19 3.98 -25.68 -0.10 1.09 16 3 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 4 C -0.16 -2.93 5.53 -24.73 -0.14 -3.06 16 5 C 0.15 3.18 3.71 -66.40 -0.25 2.93 16 6 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 7 N -0.59 -14.57 1.89 -171.74 -0.32 -14.89 16 8 C 0.16 3.88 7.76 59.84 0.46 4.35 16 9 C -0.25 -6.56 6.67 -15.06 -0.10 -6.67 16 10 H 0.07 1.71 7.84 -52.49 -0.41 1.30 16 11 C 0.00 0.11 5.10 -17.43 -0.09 0.03 16 12 N -0.90 -25.51 10.63 55.49 0.59 -24.92 16 13 Si 0.90 21.49 29.56 -169.99 -5.03 16.47 16 14 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 15 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 C 0.06 1.18 4.06 -26.16 -0.11 1.07 16 18 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 19 C -0.12 -2.87 8.21 37.16 0.30 -2.56 16 20 O -0.38 -7.84 10.90 -35.23 -0.38 -8.23 16 21 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 22 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 24 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.09 1.78 5.26 -51.92 -0.27 1.50 16 26 H 0.01 0.39 7.60 -51.93 -0.39 -0.01 16 27 H 0.00 -0.05 5.97 -51.93 -0.31 -0.36 16 28 H 0.06 1.70 6.57 -51.93 -0.34 1.36 16 29 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.08 2.05 6.20 -51.93 -0.32 1.73 16 31 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 2.12 6.89 -51.93 -0.36 1.76 16 LS Contribution 248.74 15.07 3.75 3.75 Total: -1.00 -28.31 248.74 -5.97 -34.28 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: -4.93 Total: -2.02 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: 0.35 Total: -4.44 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: 0.27 Total: -39.81 kcal Atomic # 8 Polarization: -7.84 SS G_CDS: -0.38 Total: -8.23 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.47 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -28.31 -5.97 -34.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307335132.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.027 kcal (2) G-P(sol) polarization free energy of solvation -28.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds