Wall clock time and date at job start Mon Mar 30 2020 02:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.50147 * 2 1 4 4 C 1.53121 * 109.53578 * 239.90508 * 2 1 3 5 5 C 1.53123 * 109.15809 * 182.38531 * 4 2 1 6 6 H 1.09002 * 109.50272 * 297.67138 * 5 4 2 7 7 O 1.42903 * 109.50135 * 177.59344 * 5 4 2 8 8 C 1.53032 * 109.27754 * 57.65237 * 5 4 2 9 9 N 1.46847 * 109.52825 * 300.81899 * 8 5 4 10 10 C 1.46897 * 111.00552 * 185.84210 * 9 8 5 11 11 C 1.50708 * 109.46923 * 300.66950 * 10 9 8 12 12 H 1.07997 * 119.99639 * 354.98687 * 11 10 9 13 13 C 1.37876 * 119.99852 * 174.99154 * 11 10 9 14 14 N 1.31514 * 119.99848 * 179.97438 * 13 11 10 15 15 Si 1.86802 * 119.99981 * 359.97438 * 13 11 10 16 16 H 1.48498 * 109.47039 * 269.99758 * 15 13 11 17 17 H 1.48495 * 109.47299 * 30.00131 * 15 13 11 18 18 H 1.48500 * 109.46627 * 150.00176 * 15 13 11 19 19 C 1.46843 * 111.19669 * 61.74157 * 9 8 5 20 20 H 1.08998 * 109.47198 * 299.92121 * 1 2 3 21 21 H 1.08998 * 109.47213 * 59.92393 * 1 2 3 22 22 H 1.09000 * 109.46912 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.51781 * 302.28725 * 4 2 1 24 24 H 1.08995 * 109.52152 * 62.41510 * 4 2 1 25 25 H 0.96696 * 113.99667 * 179.97438 * 7 5 4 26 26 H 1.09001 * 109.46109 * 180.80631 * 8 5 4 27 27 H 1.09004 * 109.46414 * 60.83803 * 8 5 4 28 28 H 1.08998 * 109.47298 * 180.66694 * 10 9 8 29 29 H 1.09000 * 109.47095 * 60.66495 * 10 9 8 30 30 H 0.97001 * 120.00275 * 180.02562 * 14 13 11 31 31 H 1.09000 * 109.46222 * 58.27494 * 19 9 8 32 32 H 1.08998 * 109.46452 * 178.25335 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0420 -0.7236 -1.2485 5 6 3.5720 -0.7708 -1.2100 6 1 3.9681 0.2445 -1.2297 7 8 4.0557 -1.4937 -2.3438 8 6 4.0237 -1.4715 0.0734 9 7 3.5092 -0.7408 1.2387 10 6 4.0371 -1.3041 2.4884 11 6 3.6371 -2.7533 2.5947 12 1 2.9826 -3.1884 1.8539 13 6 4.1065 -3.5233 3.6376 14 7 3.7570 -4.7877 3.7305 15 14 5.2389 -2.7706 4.9184 16 1 6.6508 -2.9351 4.4886 17 1 4.9308 -1.3252 5.0634 18 1 5.0354 -3.4533 6.2213 19 6 2.0410 -0.7230 1.2483 20 1 -0.3633 0.5126 0.8907 21 1 -0.3633 0.5150 -0.8893 22 1 -0.3633 -1.0277 -0.0005 23 1 1.6466 -1.7391 -1.2687 24 1 1.7155 -0.1877 -2.1397 25 1 5.0194 -1.5630 -2.3842 26 1 5.1128 -1.4941 0.1108 27 1 3.6388 -2.4913 0.0852 28 1 3.6309 -0.7520 3.3359 29 1 5.1243 -1.2262 2.4914 30 1 4.0870 -5.3295 4.4644 31 1 1.6653 -1.7462 1.2546 32 1 1.6899 -0.2018 2.1389 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307425516.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:23 Heat of formation + Delta-G solvation = -62.358183 kcal Electronic energy + Delta-G solvation = -13399.754600 eV Core-core repulsion = 11166.556577 eV Total energy + Delta-G solvation = -2233.198022 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.89477 -35.89562 -34.10231 -32.16981 -29.87979 -27.43737 -26.15499 -23.71106 -21.55602 -20.54011 -19.22336 -16.90279 -16.68732 -15.18731 -14.83287 -14.43437 -14.19056 -13.43994 -13.21441 -12.58790 -12.28721 -12.23055 -11.96583 -11.59189 -11.41001 -11.09880 -10.96771 -10.44467 -10.26440 -10.21638 -10.08501 -9.83278 -9.55194 -9.32424 -8.62264 -7.25740 -6.13054 -4.13366 3.25136 3.33070 3.36819 4.36290 4.40210 4.89752 5.18689 5.25192 5.28689 5.48964 5.51887 5.70364 5.87729 5.98817 6.04067 6.10511 6.24728 6.38223 6.40393 6.50080 6.63923 6.73937 6.86038 6.91929 7.02698 7.52308 7.86541 8.01083 8.11535 8.41700 8.89304 9.49404 10.99893 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.039466 B = 0.010497 C = 0.009526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.305079 B = 2666.880811 C = 2938.755632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.088 4.088 3 H 0.072 0.928 4 C -0.104 4.104 5 C 0.104 3.896 6 H 0.055 0.945 7 O -0.573 6.573 8 C 0.034 3.966 9 N -0.533 5.533 10 C 0.155 3.845 11 C -0.553 4.553 12 H 0.075 0.925 13 C 0.072 3.928 14 N -0.898 5.898 15 Si 0.880 3.120 16 H -0.276 1.276 17 H -0.264 1.264 18 H -0.287 1.287 19 C 0.064 3.936 20 H 0.055 0.945 21 H 0.051 0.949 22 H 0.055 0.945 23 H 0.066 0.934 24 H 0.060 0.940 25 H 0.375 0.625 26 H 0.064 0.936 27 H 0.053 0.947 28 H 0.029 0.971 29 H 0.025 0.975 30 H 0.264 0.736 31 H 0.044 0.956 32 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.617 9.022 -6.991 11.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.107 4.107 3 H 0.091 0.909 4 C -0.142 4.142 5 C 0.045 3.955 6 H 0.073 0.927 7 O -0.377 6.377 8 C -0.095 4.095 9 N -0.257 5.257 10 C 0.029 3.971 11 C -0.591 4.591 12 H 0.093 0.907 13 C -0.131 4.131 14 N -0.536 5.536 15 Si 0.707 3.293 16 H -0.202 1.202 17 H -0.189 1.189 18 H -0.213 1.213 19 C -0.064 4.064 20 H 0.074 0.926 21 H 0.070 0.930 22 H 0.074 0.926 23 H 0.084 0.916 24 H 0.079 0.921 25 H 0.222 0.778 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.047 0.953 29 H 0.043 0.957 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.071 9.296 -7.042 11.845 hybrid contribution 0.991 -0.697 1.042 1.598 sum -1.080 8.598 -6.000 10.541 Atomic orbital electron populations 1.21749 0.95135 1.01884 1.01246 1.21149 0.94963 0.99898 0.94723 0.90921 1.21543 0.93624 1.01322 0.97669 1.21872 0.94672 0.94004 0.84914 0.92701 1.86462 1.26477 1.78496 1.46288 1.22554 0.99607 0.97292 0.90081 1.62318 1.07196 1.52841 1.03359 1.20168 0.95254 0.94263 0.87454 1.21694 1.31221 0.94462 1.11764 0.90745 1.24981 0.95902 0.94602 0.97594 1.69930 1.44996 1.06672 1.32020 0.86784 0.81382 0.80017 0.81147 1.20203 1.18861 1.21264 1.21991 0.88890 0.99373 0.96194 0.92556 0.92987 0.92636 0.91572 0.92099 0.77844 0.91752 0.92874 0.95309 0.95672 0.92649 0.93728 0.91533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.20 37.16 0.34 -1.52 16 2 C -0.09 -1.36 2.88 -90.54 -0.26 -1.63 16 3 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 4 C -0.10 -1.65 4.94 -26.60 -0.13 -1.78 16 5 C 0.10 1.72 3.63 -26.65 -0.10 1.62 16 6 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 7 O -0.57 -9.01 13.32 -35.23 -0.47 -9.48 16 8 C 0.03 0.66 4.66 -3.84 -0.02 0.65 16 9 N -0.53 -11.15 4.86 -236.12 -1.15 -12.29 16 10 C 0.16 3.74 4.19 -4.97 -0.02 3.72 16 11 C -0.55 -15.43 8.27 -34.44 -0.28 -15.71 16 12 H 0.07 2.27 6.10 -52.49 -0.32 1.95 16 13 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 14 N -0.90 -27.40 13.96 55.43 0.77 -26.63 16 15 Si 0.88 21.37 27.37 -169.99 -4.65 16.72 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.26 -6.17 6.69 56.52 0.38 -5.79 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 C 0.06 1.23 4.40 -3.84 -0.02 1.22 16 20 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 21 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 22 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 24 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.37 4.35 9.08 45.56 0.41 4.76 16 26 H 0.06 1.23 8.12 -51.93 -0.42 0.81 16 27 H 0.05 1.22 6.73 -51.93 -0.35 0.87 16 28 H 0.03 0.70 7.49 -51.93 -0.39 0.31 16 29 H 0.03 0.61 7.29 -51.93 -0.38 0.23 16 30 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 31 H 0.04 0.97 6.86 -51.93 -0.36 0.62 16 32 H 0.07 1.26 8.08 -51.93 -0.42 0.84 16 LS Contribution 253.11 15.07 3.81 3.81 Total: -1.00 -30.66 253.11 -6.61 -37.26 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -4.34 Total: 2.07 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: -0.59 Total: -11.47 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: -0.37 Total: -38.92 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: -0.47 Total: -9.48 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.65 Total: 16.72 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -30.66 -6.61 -37.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307425516.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.098 kcal (2) G-P(sol) polarization free energy of solvation -30.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds