Wall clock time and date at job start Mon Mar 30 2020 02:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.50147 * 2 1 4 4 C 1.53121 * 109.53578 * 239.90508 * 2 1 3 5 5 C 1.53123 * 109.15809 * 182.38531 * 4 2 1 6 6 H 1.09002 * 109.50272 * 297.67138 * 5 4 2 7 7 O 1.42903 * 109.50135 * 177.59344 * 5 4 2 8 8 C 1.53032 * 109.27754 * 57.65237 * 5 4 2 9 9 N 1.46847 * 109.52825 * 300.81899 * 8 5 4 10 10 C 1.46897 * 111.00552 * 185.84210 * 9 8 5 11 11 C 1.50708 * 109.46923 * 300.66950 * 10 9 8 12 12 H 1.07997 * 119.99639 * 354.98687 * 11 10 9 13 13 C 1.37876 * 119.99852 * 174.99154 * 11 10 9 14 14 N 1.31514 * 119.99848 * 179.97438 * 13 11 10 15 15 Si 1.86802 * 119.99981 * 359.97438 * 13 11 10 16 16 H 1.48498 * 109.47039 * 269.99758 * 15 13 11 17 17 H 1.48495 * 109.47299 * 30.00131 * 15 13 11 18 18 H 1.48500 * 109.46627 * 150.00176 * 15 13 11 19 19 C 1.46843 * 111.19669 * 61.74157 * 9 8 5 20 20 H 1.08998 * 109.47198 * 299.92121 * 1 2 3 21 21 H 1.08998 * 109.47213 * 59.92393 * 1 2 3 22 22 H 1.09000 * 109.46912 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.51781 * 302.28725 * 4 2 1 24 24 H 1.08995 * 109.52152 * 62.41510 * 4 2 1 25 25 H 0.96696 * 113.99667 * 179.97438 * 7 5 4 26 26 H 1.09001 * 109.46109 * 180.80631 * 8 5 4 27 27 H 1.09004 * 109.46414 * 60.83803 * 8 5 4 28 28 H 1.08998 * 109.47298 * 180.66694 * 10 9 8 29 29 H 1.09000 * 109.47095 * 60.66495 * 10 9 8 30 30 H 0.97001 * 120.00275 * 180.02562 * 14 13 11 31 31 H 1.09000 * 109.46222 * 58.27494 * 19 9 8 32 32 H 1.08998 * 109.46452 * 178.25335 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0420 -0.7236 -1.2485 5 6 3.5720 -0.7708 -1.2100 6 1 3.9681 0.2445 -1.2297 7 8 4.0557 -1.4937 -2.3438 8 6 4.0237 -1.4715 0.0734 9 7 3.5092 -0.7408 1.2387 10 6 4.0371 -1.3041 2.4884 11 6 3.6371 -2.7533 2.5947 12 1 2.9826 -3.1884 1.8539 13 6 4.1065 -3.5233 3.6376 14 7 3.7570 -4.7877 3.7305 15 14 5.2389 -2.7706 4.9184 16 1 6.6508 -2.9351 4.4886 17 1 4.9308 -1.3252 5.0634 18 1 5.0354 -3.4533 6.2213 19 6 2.0410 -0.7230 1.2483 20 1 -0.3633 0.5126 0.8907 21 1 -0.3633 0.5150 -0.8893 22 1 -0.3633 -1.0277 -0.0005 23 1 1.6466 -1.7391 -1.2687 24 1 1.7155 -0.1877 -2.1397 25 1 5.0194 -1.5630 -2.3842 26 1 5.1128 -1.4941 0.1108 27 1 3.6388 -2.4913 0.0852 28 1 3.6309 -0.7520 3.3359 29 1 5.1243 -1.2262 2.4914 30 1 4.0870 -5.3295 4.4644 31 1 1.6653 -1.7462 1.2546 32 1 1.6899 -0.2018 2.1389 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307425516.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:22 Heat of formation + Delta-G solvation = -86.829377 kcal Electronic energy + Delta-G solvation = -13400.815750 eV Core-core repulsion = 11166.556577 eV Total energy + Delta-G solvation = -2234.259173 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.37609 -37.30474 -35.69474 -34.19837 -31.32256 -29.34911 -27.48232 -25.54400 -23.01185 -22.18549 -20.77283 -18.93756 -18.03203 -16.87585 -16.37556 -16.13841 -15.60847 -15.20581 -14.74562 -14.31212 -13.91435 -13.65787 -13.56821 -12.96119 -12.80995 -12.78149 -12.66089 -12.12642 -12.02395 -11.78307 -11.62379 -11.51284 -11.15318 -10.82597 -10.76890 -9.08739 -8.34857 -6.41186 1.33965 1.35533 1.48059 2.31375 3.00061 3.04424 3.44393 3.89702 3.96663 4.10418 4.19134 4.40338 4.54245 4.67560 4.75575 4.85611 4.88622 4.94416 5.00393 5.02250 5.12266 5.13472 5.25075 5.33788 5.42927 5.54461 6.04423 6.28284 6.33409 6.65383 6.87915 7.25958 8.81768 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.039466 B = 0.010497 C = 0.009526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.305079 B = 2666.880811 C = 2938.755632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.078 4.078 3 H 0.092 0.908 4 C -0.105 4.105 5 C 0.115 3.885 6 H 0.079 0.921 7 O -0.582 6.582 8 C 0.036 3.964 9 N -0.524 5.524 10 C 0.160 3.840 11 C -0.554 4.554 12 H 0.028 0.972 13 C 0.009 3.991 14 N -0.949 5.949 15 Si 0.954 3.046 16 H -0.266 1.266 17 H -0.243 1.243 18 H -0.284 1.284 19 C 0.063 3.937 20 H 0.065 0.935 21 H 0.078 0.922 22 H 0.041 0.959 23 H 0.041 0.959 24 H 0.087 0.913 25 H 0.393 0.607 26 H 0.068 0.932 27 H 0.007 0.993 28 H 0.033 0.967 29 H 0.033 0.967 30 H 0.267 0.733 31 H 0.004 0.996 32 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.960 11.657 -7.253 13.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.097 4.097 3 H 0.110 0.890 4 C -0.143 4.143 5 C 0.056 3.944 6 H 0.097 0.903 7 O -0.389 6.389 8 C -0.093 4.093 9 N -0.248 5.248 10 C 0.033 3.967 11 C -0.592 4.592 12 H 0.047 0.953 13 C -0.189 4.189 14 N -0.589 5.589 15 Si 0.776 3.224 16 H -0.191 1.191 17 H -0.167 1.167 18 H -0.210 1.210 19 C -0.065 4.065 20 H 0.084 0.916 21 H 0.097 0.903 22 H 0.060 0.940 23 H 0.060 0.940 24 H 0.106 0.894 25 H 0.242 0.758 26 H 0.087 0.913 27 H 0.025 0.975 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.075 0.925 31 H 0.023 0.977 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.410 11.947 -7.331 14.087 hybrid contribution 0.746 -1.588 1.045 2.042 sum -0.664 10.358 -6.286 12.135 Atomic orbital electron populations 1.21736 0.93207 1.01634 1.03072 1.21115 0.96528 0.99925 0.92142 0.88961 1.21591 0.93251 1.00446 0.99001 1.21779 0.95144 0.94431 0.83089 0.90327 1.86437 1.28419 1.78535 1.45485 1.22602 0.99703 0.95304 0.91704 1.62374 1.08142 1.51791 1.02483 1.20065 0.95720 0.91627 0.89334 1.21898 1.30116 0.96653 1.10567 0.95342 1.25992 0.97810 0.94928 1.00186 1.70091 1.46934 1.08553 1.33282 0.85615 0.79079 0.79993 0.77677 1.19052 1.16676 1.20961 1.22078 0.87845 0.97754 0.98835 0.91575 0.90319 0.93982 0.93992 0.89402 0.75752 0.91310 0.97462 0.94856 0.94915 0.92450 0.97744 0.91219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 9.20 71.98 0.66 -2.67 16 2 C -0.08 -2.27 2.88 -10.74 -0.03 -2.30 16 3 H 0.09 2.39 8.14 -2.38 -0.02 2.37 16 4 C -0.11 -3.17 4.94 30.68 0.15 -3.02 16 5 C 0.11 3.58 3.63 30.65 0.11 3.69 16 6 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 7 O -0.58 -17.31 13.32 -148.98 -1.98 -19.30 16 8 C 0.04 1.42 4.66 86.32 0.40 1.83 16 9 N -0.52 -21.68 4.86 -900.94 -4.38 -26.05 16 10 C 0.16 7.64 4.19 85.56 0.36 8.00 16 11 C -0.55 -31.95 8.27 25.60 0.21 -31.74 16 12 H 0.03 1.86 6.10 -2.91 -0.02 1.84 16 13 C 0.01 0.51 5.47 84.65 0.46 0.97 16 14 N -0.95 -59.84 13.96 21.45 0.30 -59.54 16 15 Si 0.95 43.85 27.37 68.60 1.88 45.72 16 16 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 17 H -0.24 -10.32 6.69 99.48 0.67 -9.65 16 18 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 19 C 0.06 2.44 4.40 86.33 0.38 2.82 16 20 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 21 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 22 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 23 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 25 H 0.39 8.35 9.08 -74.06 -0.67 7.67 16 26 H 0.07 2.60 8.12 -2.39 -0.02 2.58 16 27 H 0.01 0.34 6.73 -2.38 -0.02 0.33 16 28 H 0.03 1.57 7.49 -2.39 -0.02 1.55 16 29 H 0.03 1.52 7.29 -2.39 -0.02 1.50 16 30 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 31 H 0.00 0.20 6.86 -2.39 -0.02 0.18 16 32 H 0.07 2.60 8.08 -2.39 -0.02 2.58 16 Total: -1.00 -68.01 253.11 -1.10 -69.11 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: 0.38 Total: 12.47 kcal Atomic # 6 Polarization: -25.12 SS G_CDS: 2.71 Total: -22.41 kcal Atomic # 7 Polarization: -81.52 SS G_CDS: -4.08 Total: -85.59 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -1.98 Total: -19.30 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 1.88 Total: 45.72 kcal Total: -68.01 -1.10 -69.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307425516.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.721 kcal (2) G-P(sol) polarization free energy of solvation -68.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds