Wall clock time and date at job start Mon Mar 30 2020 02:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 110.46090 * 2 1 4 4 C 1.54374 * 110.41335 * 122.41574 * 2 1 3 5 5 H 1.08996 * 110.32350 * 23.73568 * 4 2 1 6 6 O 1.42897 * 110.41074 * 261.56531 * 4 2 1 7 7 C 1.54266 * 105.05582 * 142.63175 * 4 2 1 8 8 C 1.54372 * 105.06543 * 0.02562 * 7 4 2 9 9 N 1.48566 * 104.59367 * 336.14562 * 8 7 4 10 10 C 1.46900 * 111.00074 * 159.03824 * 9 8 7 11 11 C 1.53000 * 109.46798 * 69.87521 * 10 9 8 12 12 C 1.50703 * 109.47290 * 180.02562 * 11 10 9 13 13 H 1.08006 * 119.99748 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00475 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99565 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 120.00240 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.46795 * 59.99858 * 16 14 12 18 18 H 1.48499 * 109.47132 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47088 * 300.00016 * 16 14 12 20 20 H 1.09001 * 109.47098 * 182.41567 * 1 2 3 21 21 H 1.08999 * 109.46918 * 302.41148 * 1 2 3 22 22 H 1.08998 * 109.47960 * 62.41119 * 1 2 3 23 23 H 0.96703 * 114.00037 * 182.85841 * 6 4 2 24 24 H 1.09004 * 110.32346 * 241.09906 * 7 4 2 25 25 H 1.08999 * 110.32215 * 118.90073 * 7 4 2 26 26 H 1.08996 * 110.41390 * 217.37178 * 8 7 4 27 27 H 1.08998 * 110.41303 * 94.92448 * 8 7 4 28 28 H 1.08991 * 109.47124 * 189.87629 * 10 9 8 29 29 H 1.09001 * 109.47037 * 309.87882 * 10 9 8 30 30 H 1.09001 * 109.47298 * 299.99930 * 11 10 9 31 31 H 1.09001 * 109.47032 * 60.00357 * 11 10 9 32 32 H 0.96997 * 119.99807 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0213 0.0000 4 6 2.0684 -0.7756 1.2214 5 1 1.3235 -1.4880 1.5758 6 8 2.4263 0.1291 2.2679 7 6 3.3178 -1.5188 0.7051 8 6 3.4294 -1.1292 -0.7845 9 7 2.0485 -0.7454 -1.1755 10 6 2.0576 0.1028 -2.3749 11 6 2.4705 -0.7335 -3.5878 12 6 2.4804 0.1366 -4.8181 13 1 2.2180 1.1816 -4.7426 14 6 2.8234 -0.4014 -6.0404 15 7 3.1425 -1.6739 -6.1324 16 14 2.8350 0.6771 -7.5655 17 1 3.8021 1.7884 -7.3785 18 1 3.2359 -0.1345 -8.7427 19 1 1.4768 1.2350 -7.7876 20 1 -0.3633 -1.0268 0.0433 21 1 -0.3633 0.5508 0.8676 22 1 -0.3635 0.4759 -0.9108 23 1 2.8118 -0.3000 3.0441 24 1 3.1862 -2.5961 0.8063 25 1 4.2041 -1.1922 1.2489 26 1 3.7692 -1.9797 -1.3754 27 1 4.1078 -0.2849 -0.9068 28 1 1.0606 0.5119 -2.5381 29 1 2.7672 0.9187 -2.2376 30 1 3.4675 -1.1427 -3.4246 31 1 1.7608 -1.5494 -3.7251 32 1 3.3842 -2.0523 -6.9922 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307435830.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:30 Heat of formation + Delta-G solvation = -83.585062 kcal Electronic energy + Delta-G solvation = -13014.968035 eV Core-core repulsion = 10780.849546 eV Total energy + Delta-G solvation = -2234.118489 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.47581 -37.19868 -35.35178 -33.03853 -32.37863 -29.82272 -26.23851 -26.09274 -23.29212 -21.54166 -21.20417 -18.57241 -18.03816 -16.65221 -16.52621 -16.36367 -15.77616 -14.99599 -14.76502 -14.20973 -13.98914 -13.83800 -13.20505 -13.04139 -12.77578 -12.65905 -12.52202 -12.35486 -12.25235 -11.71890 -11.49738 -11.35252 -11.19442 -10.89283 -10.56287 -9.46325 -8.21817 -6.33878 1.38996 1.42552 1.50590 2.38871 2.89069 3.11285 3.40434 3.63932 3.81737 4.06422 4.21432 4.36915 4.44000 4.51153 4.55315 4.75196 4.83624 4.85963 4.99297 5.03083 5.09276 5.12952 5.33069 5.42710 5.58154 5.75754 5.95416 6.09327 6.26836 6.82317 6.92349 7.35311 8.90268 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.064780 B = 0.007277 C = 0.006925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.129922 B = 3847.054884 C = 4042.563061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.054 3.946 3 H 0.041 0.959 4 C 0.112 3.888 5 H 0.086 0.914 6 O -0.578 6.578 7 C -0.147 4.147 8 C 0.031 3.969 9 N -0.516 5.516 10 C 0.070 3.930 11 C 0.041 3.959 12 C -0.550 4.550 13 H 0.059 0.941 14 C 0.003 3.997 15 N -0.931 5.931 16 Si 0.968 3.032 17 H -0.267 1.267 18 H -0.280 1.280 19 H -0.266 1.266 20 H 0.066 0.934 21 H 0.076 0.924 22 H 0.047 0.953 23 H 0.398 0.602 24 H 0.090 0.910 25 H 0.092 0.908 26 H 0.066 0.934 27 H 0.031 0.969 28 H 0.064 0.936 29 H 0.017 0.983 30 H -0.008 1.008 31 H -0.006 1.006 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.646 1.447 14.922 15.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.054 4.054 3 H 0.059 0.941 4 C 0.052 3.948 5 H 0.104 0.896 6 O -0.387 6.387 7 C -0.185 4.185 8 C -0.097 4.097 9 N -0.241 5.241 10 C -0.058 4.058 11 C 0.003 3.997 12 C -0.588 4.588 13 H 0.077 0.923 14 C -0.196 4.196 15 N -0.571 5.571 16 Si 0.792 3.208 17 H -0.192 1.192 18 H -0.206 1.206 19 H -0.191 1.191 20 H 0.085 0.915 21 H 0.095 0.905 22 H 0.066 0.934 23 H 0.249 0.751 24 H 0.109 0.891 25 H 0.111 0.889 26 H 0.085 0.915 27 H 0.049 0.951 28 H 0.083 0.917 29 H 0.036 0.964 30 H 0.010 0.990 31 H 0.013 0.987 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.160 1.289 14.262 14.482 hybrid contribution 0.953 0.591 -0.690 1.316 sum -1.207 1.880 13.573 13.755 Atomic orbital electron populations 1.21659 0.92322 1.02748 1.01862 1.22654 0.97242 0.95855 0.89657 0.94066 1.22474 0.95358 0.90084 0.86836 0.89645 1.86466 1.84678 1.37914 1.29648 1.23063 0.99266 1.02037 0.94100 1.23039 0.89965 0.99744 0.96957 1.65392 1.18546 1.37506 1.02629 1.22135 0.99588 0.93842 0.90197 1.18837 0.94602 0.94634 0.91582 1.21601 1.46630 0.96565 0.94003 0.92308 1.25970 0.94522 0.96433 1.02628 1.70100 1.46906 1.13906 1.26151 0.85468 0.79082 0.78488 0.77804 1.19230 1.20565 1.19058 0.91487 0.90494 0.93407 0.75134 0.89127 0.88920 0.91507 0.95099 0.91742 0.96441 0.98997 0.98747 0.92648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.52 9.37 71.98 0.67 -2.85 16 2 C 0.05 1.70 2.63 45.06 0.12 1.82 16 3 H 0.04 1.42 7.94 -2.38 -0.02 1.40 16 4 C 0.11 2.73 3.97 31.49 0.13 2.86 16 5 H 0.09 1.80 7.82 -2.39 -0.02 1.78 16 6 O -0.58 -12.71 13.27 -148.98 -1.98 -14.69 16 7 C -0.15 -3.60 6.80 31.49 0.21 -3.39 16 8 C 0.03 1.09 5.74 86.45 0.50 1.58 16 9 N -0.52 -19.78 5.05 -856.80 -4.33 -24.10 16 10 C 0.07 3.18 4.69 86.30 0.40 3.59 16 11 C 0.04 2.27 5.03 29.85 0.15 2.42 16 12 C -0.55 -32.37 9.11 25.60 0.23 -32.14 16 13 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 14 C 0.00 0.15 5.46 84.65 0.46 0.62 16 15 N -0.93 -57.78 13.29 21.45 0.28 -57.49 16 16 Si 0.97 44.97 29.54 68.60 2.03 47.00 16 17 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 18 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 19 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 20 H 0.07 1.75 8.09 -2.39 -0.02 1.73 16 21 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 22 H 0.05 1.41 7.32 -2.39 -0.02 1.39 16 23 H 0.40 4.60 9.11 -74.06 -0.67 3.93 16 24 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 25 H 0.09 1.92 7.98 -2.39 -0.02 1.90 16 26 H 0.07 2.54 7.76 -2.39 -0.02 2.52 16 27 H 0.03 1.13 7.82 -2.39 -0.02 1.11 16 28 H 0.06 2.86 7.25 -2.39 -0.02 2.84 16 29 H 0.02 0.79 7.88 -2.39 -0.02 0.77 16 30 H -0.01 -0.50 7.26 -2.39 -0.02 -0.51 16 31 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 32 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -68.30 261.97 -0.71 -69.01 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: 0.41 Total: 5.77 kcal Atomic # 6 Polarization: -28.36 SS G_CDS: 2.88 Total: -25.49 kcal Atomic # 7 Polarization: -77.55 SS G_CDS: -4.04 Total: -81.60 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: -1.98 Total: -14.69 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -68.30 -0.71 -69.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307435830.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.578 kcal (2) G-P(sol) polarization free energy of solvation -68.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds