Wall clock time and date at job start Mon Mar 30 2020 02:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 110.67587 * 2 1 4 4 C 1.55000 * 110.61526 * 237.03407 * 2 1 3 5 5 C 1.54818 * 102.09030 * 204.47771 * 4 2 1 6 6 H 1.09004 * 110.48564 * 262.20686 * 5 4 2 7 7 N 1.46896 * 110.48881 * 139.56070 * 5 4 2 8 8 C 1.46897 * 111.00087 * 90.23169 * 7 5 4 9 9 C 1.50705 * 109.46986 * 180.02562 * 8 7 5 10 10 H 1.07993 * 119.99936 * 359.97438 * 9 8 7 11 11 C 1.37879 * 119.99764 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99997 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 119.99827 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47277 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.47069 * 120.00309 * 13 11 9 16 16 H 1.48500 * 109.47444 * 240.00236 * 13 11 9 17 17 C 1.54097 * 104.18808 * 20.87976 * 5 4 2 18 18 H 1.08997 * 109.87725 * 121.45198 * 17 5 4 19 19 C 1.53002 * 110.00793 * 242.53820 * 17 5 4 20 20 O 1.43745 * 107.29442 * 2.03270 * 17 5 4 21 21 H 1.09003 * 109.46836 * 298.48606 * 1 2 3 22 22 H 1.08994 * 109.47163 * 58.48871 * 1 2 3 23 23 H 1.09002 * 109.47298 * 178.49042 * 1 2 3 24 24 H 1.08996 * 110.90766 * 86.28222 * 4 2 1 25 25 H 1.09001 * 110.94010 * 322.68241 * 4 2 1 26 26 H 1.00902 * 110.99982 * 214.18583 * 7 5 4 27 27 H 1.09001 * 109.46956 * 299.99868 * 8 7 5 28 28 H 1.08996 * 109.47397 * 60.00249 * 8 7 5 29 29 H 0.96998 * 119.99554 * 179.97438 * 12 11 9 30 30 H 1.08994 * 109.47729 * 179.36089 * 19 17 5 31 31 H 1.09005 * 109.46762 * 299.36423 * 19 17 5 32 32 H 1.09000 * 109.46940 * 59.36048 * 19 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 6 2.0757 -0.7894 -1.2172 5 6 3.4795 -1.2169 -0.7235 6 1 4.2406 -0.5333 -1.0997 7 7 3.7732 -2.5947 -1.1394 8 6 4.4358 -2.6191 -2.4502 9 6 4.7201 -4.0461 -2.8429 10 1 4.4373 -4.8539 -2.1843 11 6 5.3413 -4.3201 -4.0429 12 7 5.6861 -3.3362 -4.8446 13 14 5.6944 -6.0887 -4.5293 14 1 5.2118 -7.0014 -3.4619 15 1 4.9945 -6.4014 -5.8011 16 1 7.1570 -6.2694 -4.7119 17 6 3.3839 -1.1255 0.8118 18 1 3.6044 -2.0965 1.2552 19 6 4.3687 -0.0785 1.3362 20 8 2.0384 -0.7354 1.1337 21 1 -0.3633 0.4902 0.9033 22 1 -0.3633 0.5371 -0.8761 23 1 -0.3634 -1.0273 -0.0271 24 1 2.1509 -0.1477 -2.0950 25 1 1.4551 -1.6607 -1.4264 26 1 4.3284 -3.0715 -0.4447 27 1 3.7850 -2.1606 -3.1948 28 1 5.3720 -2.0638 -2.3945 29 1 6.1234 -3.5290 -5.6887 30 1 4.2859 -0.0130 2.4210 31 1 5.3844 -0.3677 1.0661 32 1 4.1375 0.8909 0.8949 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307536626.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:00 Heat of formation + Delta-G solvation = -59.552071 kcal Electronic energy + Delta-G solvation = -13009.188340 eV Core-core repulsion = 10776.112000 eV Total energy + Delta-G solvation = -2233.076340 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.51378 -35.00792 -32.61825 -32.29383 -30.36467 -28.20919 -26.12493 -23.54183 -21.57116 -20.59364 -20.23177 -16.63898 -16.21995 -15.44596 -14.69520 -14.60880 -14.19441 -13.37723 -13.00584 -12.77600 -12.46795 -12.33609 -11.93166 -11.69749 -11.43596 -11.30925 -10.97389 -10.82503 -10.57056 -10.46138 -10.31410 -9.86737 -9.35615 -9.16348 -8.51002 -7.35959 -6.05643 -4.07648 3.29853 3.37152 3.42519 4.06014 4.41027 4.88927 4.94407 5.08484 5.30548 5.31389 5.38417 5.48143 5.62220 5.68215 5.68624 5.84828 6.01350 6.06318 6.22518 6.24381 6.28558 6.40204 6.60576 7.17266 7.28234 7.37096 7.76973 8.10007 8.34163 8.57062 9.01972 9.57563 11.05559 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.054090 B = 0.007438 C = 0.007105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.530218 B = 3763.399997 C = 3940.080930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.070 3.930 3 H 0.062 0.938 4 C -0.137 4.137 5 C 0.058 3.942 6 H 0.051 0.949 7 N -0.678 5.678 8 C 0.194 3.806 9 C -0.514 4.514 10 H 0.063 0.937 11 C 0.055 3.945 12 N -0.898 5.898 13 Si 0.899 3.101 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.285 1.285 17 C 0.072 3.928 18 H 0.095 0.905 19 C -0.169 4.169 20 O -0.371 6.371 21 H 0.057 0.943 22 H 0.067 0.933 23 H 0.064 0.936 24 H 0.070 0.930 25 H 0.089 0.911 26 H 0.330 0.670 27 H 0.028 0.972 28 H -0.013 1.013 29 H 0.261 0.739 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.373 6.761 8.849 12.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.012 3.988 3 H 0.080 0.920 4 C -0.176 4.176 5 C -0.053 4.053 6 H 0.068 0.932 7 N -0.310 5.310 8 C 0.067 3.933 9 C -0.553 4.553 10 H 0.082 0.918 11 C -0.146 4.146 12 N -0.538 5.538 13 Si 0.727 3.273 14 H -0.196 1.196 15 H -0.210 1.210 16 H -0.211 1.211 17 C 0.014 3.986 18 H 0.113 0.887 19 C -0.227 4.227 20 O -0.290 6.290 21 H 0.076 0.924 22 H 0.086 0.914 23 H 0.083 0.917 24 H 0.089 0.911 25 H 0.107 0.893 26 H 0.148 0.852 27 H 0.046 0.954 28 H 0.004 0.996 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.024 6.640 8.603 12.425 hybrid contribution 1.357 -0.472 -0.444 1.504 sum -4.666 6.168 8.159 11.242 Atomic orbital electron populations 1.21741 0.93553 1.02929 1.01783 1.23095 0.94835 0.94943 0.85904 0.92038 1.23227 0.96827 1.00487 0.97031 1.22886 0.96795 0.93012 0.92645 0.93161 1.60795 1.52422 1.11213 1.06566 1.19613 0.91591 0.97226 0.84846 1.21231 1.37785 0.92392 1.03902 0.91850 1.24997 0.95693 0.97528 0.96385 1.69974 1.41472 1.31183 1.11134 0.86419 0.77775 0.84605 0.78488 1.19621 1.20973 1.21074 1.22948 0.82759 0.97949 0.94987 0.88739 1.22280 0.99394 0.99546 1.01457 1.88852 1.27533 1.73467 1.39171 0.92385 0.91386 0.91659 0.91118 0.89262 0.85246 0.95363 0.99564 0.92950 0.92156 0.91616 0.92568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.66 37.16 0.36 -1.36 16 2 C 0.07 1.01 3.93 -25.68 -0.10 0.91 16 3 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 4 C -0.14 -2.30 6.30 -24.72 -0.16 -2.46 16 5 C 0.06 1.05 3.01 -66.18 -0.20 0.85 16 6 H 0.05 0.95 7.39 -51.93 -0.38 0.56 16 7 N -0.68 -14.69 6.30 -106.38 -0.67 -15.36 16 8 C 0.19 5.09 5.30 -4.98 -0.03 5.07 16 9 C -0.51 -14.65 9.32 -34.44 -0.32 -14.97 16 10 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 11 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 12 N -0.90 -26.88 13.29 55.43 0.74 -26.15 16 13 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 14 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 15 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 C 0.07 1.14 3.79 -26.16 -0.10 1.04 16 18 H 0.09 1.49 7.47 -51.93 -0.39 1.11 16 19 C -0.17 -2.25 9.31 37.16 0.35 -1.91 16 20 O -0.37 -6.06 10.89 -35.23 -0.38 -6.45 16 21 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 22 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 24 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 25 H 0.09 1.63 7.97 -51.93 -0.41 1.22 16 26 H 0.33 6.78 8.01 -39.29 -0.31 6.47 16 27 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 28 H -0.01 -0.37 8.08 -51.93 -0.42 -0.79 16 29 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 265.73 15.07 4.00 4.00 Total: -1.00 -30.16 265.73 -6.90 -37.06 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -5.27 Total: 1.52 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: -0.29 Total: -11.35 kcal Atomic # 7 Polarization: -41.57 SS G_CDS: 0.07 Total: -41.51 kcal Atomic # 8 Polarization: -6.06 SS G_CDS: -0.38 Total: -6.45 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -30.16 -6.90 -37.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307536626.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.494 kcal (2) G-P(sol) polarization free energy of solvation -30.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds