Wall clock time and date at job start Mon Mar 30 2020 02:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 110.55237 * 2 1 4 4 C 1.54999 * 110.61743 * 237.12730 * 2 1 3 5 5 C 1.54810 * 102.12305 * 204.29784 * 4 2 1 6 6 H 1.09009 * 110.48570 * 262.21776 * 5 4 2 7 7 N 1.46894 * 110.48979 * 139.57372 * 5 4 2 8 8 C 1.46906 * 111.00287 * 86.45075 * 7 5 4 9 9 C 1.50696 * 109.47360 * 179.97438 * 8 7 5 10 10 H 1.08007 * 120.00115 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00217 * 179.97438 * 9 8 7 12 12 N 1.31518 * 119.99752 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00239 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47159 * 90.00094 * 13 11 9 15 15 H 1.48501 * 109.46955 * 210.00256 * 13 11 9 16 16 H 1.48499 * 109.46860 * 330.00010 * 13 11 9 17 17 C 1.54196 * 104.14628 * 20.88499 * 5 4 2 18 18 H 1.08995 * 109.87396 * 242.60307 * 17 5 4 19 19 C 1.53002 * 110.00039 * 121.52151 * 17 5 4 20 20 O 1.43742 * 107.29773 * 2.02541 * 17 5 4 21 21 H 1.09002 * 109.46919 * 182.87926 * 1 2 3 22 22 H 1.09000 * 109.47272 * 302.87404 * 1 2 3 23 23 H 1.08992 * 109.47659 * 62.87833 * 1 2 3 24 24 H 1.09002 * 110.90669 * 322.51228 * 4 2 1 25 25 H 1.08997 * 110.90878 * 86.08334 * 4 2 1 26 26 H 1.00898 * 110.99923 * 322.50098 * 7 5 4 27 27 H 1.09000 * 109.46776 * 300.00317 * 8 7 5 28 28 H 1.09005 * 109.46592 * 59.99983 * 8 7 5 29 29 H 0.96997 * 119.99916 * 179.97438 * 12 11 9 30 30 H 1.09005 * 109.47072 * 300.63410 * 19 17 5 31 31 H 1.08994 * 109.47025 * 60.63220 * 19 17 5 32 32 H 1.09001 * 109.47161 * 180.63547 * 19 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0206 0.0000 4 6 2.0757 -0.7874 -1.2184 5 6 3.4814 -1.2120 -0.7280 6 1 4.2402 -0.5263 -1.1051 7 7 3.7776 -2.5888 -1.1457 8 6 4.3557 -2.6165 -2.4959 9 6 4.6462 -4.0420 -2.8889 10 1 4.4232 -4.8471 -2.2043 11 6 5.1956 -4.3188 -4.1228 12 7 5.4667 -3.3385 -4.9567 13 14 5.5550 -6.0859 -4.6102 14 1 4.3662 -6.6645 -5.2864 15 1 6.7156 -6.1177 -5.5361 16 1 5.8691 -6.8802 -3.3954 17 6 3.3876 -1.1217 0.8085 18 1 4.0878 -0.3732 1.1791 19 6 3.7023 -2.4827 1.4328 20 8 2.0417 -0.7348 1.1325 21 1 -0.3633 -1.0264 0.0516 22 1 -0.3634 0.5578 0.8631 23 1 -0.3634 0.4684 -0.9146 24 1 1.4565 -1.6599 -1.4268 25 1 2.1476 -0.1451 -2.0961 26 1 2.9529 -3.1678 -1.0936 27 1 3.6492 -2.1811 -3.2026 28 1 5.2815 -2.0412 -2.5066 29 1 5.8535 -3.5331 -5.8246 30 1 2.9936 -3.2242 1.0640 31 1 4.7148 -2.7814 1.1616 32 1 3.6225 -2.4119 2.5176 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307536637.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:04 Heat of formation + Delta-G solvation = -55.827602 kcal Electronic energy + Delta-G solvation = -13101.588821 eV Core-core repulsion = 10868.673986 eV Total energy + Delta-G solvation = -2232.914835 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.49326 -35.06038 -32.64504 -32.34579 -30.00480 -28.22026 -25.91295 -23.44631 -21.80229 -21.03287 -19.69674 -16.81927 -16.05247 -15.39385 -14.84721 -14.68418 -13.89160 -13.35532 -13.02101 -12.78956 -12.23172 -12.12503 -11.94101 -11.54182 -11.41652 -11.35633 -10.86258 -10.75584 -10.56361 -10.48363 -10.29437 -9.88630 -9.42191 -9.13134 -8.50763 -7.30868 -6.05634 -4.07671 3.30424 3.36612 3.41251 4.07466 4.40895 4.87683 4.97543 5.15123 5.27200 5.30859 5.40500 5.54453 5.62755 5.78916 5.87292 5.91724 6.02787 6.16285 6.21126 6.32936 6.38523 6.50302 6.86083 7.19970 7.30119 7.39764 7.75943 8.09651 8.34597 8.56692 9.01661 9.57486 11.05442 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.053952 B = 0.007809 C = 0.007344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.851520 B = 3584.799823 C = 3811.537956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.072 3.928 3 H 0.064 0.936 4 C -0.178 4.178 5 C 0.059 3.941 6 H 0.083 0.917 7 N -0.674 5.674 8 C 0.193 3.807 9 C -0.515 4.515 10 H 0.062 0.938 11 C 0.056 3.944 12 N -0.898 5.898 13 Si 0.899 3.101 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.273 1.273 17 C 0.077 3.923 18 H 0.061 0.939 19 C -0.124 4.124 20 O -0.379 6.379 21 H 0.062 0.938 22 H 0.058 0.942 23 H 0.067 0.933 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.332 0.668 27 H -0.013 1.013 28 H 0.027 0.973 29 H 0.261 0.739 30 H 0.060 0.940 31 H 0.079 0.921 32 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.565 5.577 8.238 11.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.014 3.986 3 H 0.082 0.918 4 C -0.218 4.218 5 C -0.053 4.053 6 H 0.101 0.899 7 N -0.303 5.303 8 C 0.067 3.933 9 C -0.553 4.553 10 H 0.081 0.919 11 C -0.146 4.146 12 N -0.538 5.538 13 Si 0.727 3.273 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.197 1.197 17 C 0.019 3.981 18 H 0.078 0.922 19 C -0.182 4.182 20 O -0.299 6.299 21 H 0.081 0.919 22 H 0.077 0.923 23 H 0.086 0.914 24 H 0.095 0.905 25 H 0.093 0.907 26 H 0.150 0.850 27 H 0.005 0.995 28 H 0.045 0.955 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -5.959 5.527 8.556 11.801 hybrid contribution -0.400 -0.551 -1.257 1.430 sum -6.359 4.976 7.299 10.885 Atomic orbital electron populations 1.21745 0.93695 1.02777 1.01836 1.22971 0.94690 0.95033 0.85875 0.91828 1.23917 0.98536 1.01138 0.98179 1.22931 0.94829 0.93545 0.94001 0.89859 1.60784 1.33223 1.05891 1.30437 1.19589 0.94084 0.97441 0.82201 1.21185 1.41290 0.92540 1.00320 0.91944 1.24989 0.95690 0.97477 0.96403 1.69961 1.43937 1.31345 1.08519 0.86483 0.77793 0.84650 0.78398 1.20741 1.21235 1.19739 1.22823 0.83328 0.97144 0.94764 0.92153 1.21570 1.03358 0.95213 0.98016 1.88848 1.28616 1.73583 1.38808 0.91860 0.92318 0.91432 0.90501 0.90691 0.84996 0.99526 0.95484 0.92910 0.92086 0.90190 0.94108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.66 37.16 0.36 -1.33 16 2 C 0.07 1.02 3.97 -25.68 -0.10 0.92 16 3 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 4 C -0.18 -2.83 6.19 -24.72 -0.15 -2.99 16 5 C 0.06 1.05 3.32 -66.14 -0.22 0.83 16 6 H 0.08 1.53 7.88 -51.92 -0.41 1.12 16 7 N -0.67 -14.15 4.58 -106.32 -0.49 -14.63 16 8 C 0.19 4.99 5.29 -4.97 -0.03 4.96 16 9 C -0.51 -14.48 9.32 -34.44 -0.32 -14.80 16 10 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 11 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 12 N -0.90 -26.74 13.29 55.43 0.74 -26.00 16 13 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 15 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 16 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 17 C 0.08 1.26 4.05 -26.10 -0.11 1.15 16 18 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 19 C -0.12 -1.98 8.58 37.16 0.32 -1.66 16 20 O -0.38 -6.17 10.89 -35.23 -0.38 -6.55 16 21 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 22 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.08 1.27 7.55 -51.93 -0.39 0.88 16 25 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.33 6.85 7.62 -39.29 -0.30 6.55 16 27 H -0.01 -0.36 8.12 -51.93 -0.42 -0.78 16 28 H 0.03 0.75 8.08 -51.93 -0.42 0.33 16 29 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 30 H 0.06 1.01 7.36 -51.93 -0.38 0.63 16 31 H 0.08 1.34 7.92 -51.93 -0.41 0.93 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 263.11 15.07 3.97 3.97 Total: -1.00 -29.40 263.11 -6.78 -36.18 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -5.24 Total: 1.85 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: -0.35 Total: -11.42 kcal Atomic # 7 Polarization: -40.89 SS G_CDS: 0.25 Total: -40.64 kcal Atomic # 8 Polarization: -6.17 SS G_CDS: -0.38 Total: -6.55 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -29.40 -6.78 -36.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307536637.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.649 kcal (2) G-P(sol) polarization free energy of solvation -29.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds