Wall clock time and date at job start Mon Mar 30 2020 02:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46949 * 2 1 4 4 C 1.50695 * 109.46872 * 240.00157 * 2 1 3 5 5 H 1.08007 * 120.00153 * 304.98987 * 4 2 1 6 6 C 1.37876 * 119.99829 * 124.99261 * 4 2 1 7 7 N 1.31517 * 119.99853 * 184.77487 * 6 4 2 8 8 Si 1.86797 * 120.00140 * 4.77228 * 6 4 2 9 9 H 1.48500 * 109.46764 * 84.64434 * 8 6 4 10 10 H 1.48500 * 109.47530 * 204.64308 * 8 6 4 11 11 H 1.48501 * 109.47030 * 324.64393 * 8 6 4 12 12 N 1.46902 * 109.46887 * 120.00543 * 2 1 3 13 13 C 1.48551 * 111.00274 * 64.45467 * 12 2 1 14 14 C 1.54377 * 104.59704 * 159.04044 * 13 12 2 15 15 H 1.08992 * 110.32763 * 95.03816 * 14 13 12 16 16 C 1.53000 * 110.32678 * 217.25186 * 14 13 12 17 17 C 1.54265 * 105.05815 * 336.14638 * 14 13 12 18 18 H 1.09000 * 110.40897 * 118.94220 * 17 14 13 19 19 O 1.42900 * 110.32321 * 241.10493 * 17 14 13 20 20 C 1.48555 * 110.99717 * 179.87451 * 12 2 1 21 21 H 1.09004 * 109.46897 * 294.95654 * 1 2 3 22 22 H 1.08996 * 109.47291 * 54.95560 * 1 2 3 23 23 H 1.09003 * 109.47163 * 174.95634 * 1 2 3 24 24 H 0.97005 * 119.99930 * 179.97438 * 7 6 4 25 25 H 1.09006 * 110.41446 * 277.81508 * 13 12 2 26 26 H 1.08999 * 110.41666 * 40.14157 * 13 12 2 27 27 H 1.09000 * 109.47273 * 175.63567 * 16 14 13 28 28 H 1.08998 * 109.46955 * 295.63651 * 16 14 13 29 29 H 1.09000 * 109.47240 * 55.63416 * 16 14 13 30 30 H 0.96705 * 113.99756 * 177.08868 * 19 17 14 31 31 H 1.09003 * 110.41475 * 82.17741 * 20 12 2 32 32 H 1.09002 * 110.41384 * 319.73494 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 1.7066 -1.7180 -1.4431 6 6 2.9077 -0.0740 -2.0848 7 7 3.2727 -0.6566 -3.2059 8 14 3.5751 1.6155 -1.6498 9 1 4.7582 1.4675 -0.7646 10 1 3.9722 2.3258 -2.8920 11 1 2.5256 2.3965 -0.9470 12 7 2.0197 -0.6926 1.1994 13 6 1.6333 -2.1269 1.1810 14 6 2.6241 -2.8092 2.1485 15 1 2.1856 -2.8926 3.1428 16 6 3.0153 -4.1912 1.6213 17 6 3.8553 -1.8804 2.1822 18 1 4.0228 -1.5077 3.1927 19 8 5.0129 -2.5734 1.7114 20 6 3.5047 -0.7151 1.2322 21 1 -0.3633 0.4336 0.9318 22 1 -0.3634 0.5901 -0.8413 23 1 -0.3633 -1.0237 -0.0903 24 1 3.8883 -0.2088 -3.8071 25 1 0.6100 -2.2496 1.5360 26 1 1.7378 -2.5360 0.1761 27 1 3.7724 -4.6277 2.2728 28 1 2.1362 -4.8354 1.6033 29 1 3.4160 -4.0951 0.6122 30 1 5.8087 -2.0258 1.6682 31 1 3.8906 0.2254 1.6256 32 1 3.9042 -0.9037 0.2357 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307685329.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:16 Heat of formation + Delta-G solvation = -49.122637 kcal Electronic energy + Delta-G solvation = -13792.807718 eV Core-core repulsion = 11560.183632 eV Total energy + Delta-G solvation = -2232.624086 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.86690 -35.73736 -33.28375 -31.78106 -29.88095 -26.89450 -25.60795 -24.69571 -21.66210 -19.46643 -19.03553 -17.01804 -16.83144 -15.34006 -14.36063 -14.10652 -13.69437 -13.45170 -12.78884 -12.47897 -12.33672 -11.94842 -11.73385 -11.46653 -11.03178 -10.97085 -10.87895 -10.41985 -10.16907 -10.03474 -9.84457 -9.65245 -9.27228 -9.14968 -8.65460 -7.24933 -6.16964 -4.19227 3.19691 3.29488 3.29618 4.31430 4.61955 5.06081 5.22314 5.31534 5.48317 5.53465 5.93638 6.05015 6.12665 6.21932 6.36236 6.41842 6.50483 6.64390 6.64929 6.70131 6.81479 6.95392 7.01670 7.10925 7.18611 7.58399 7.84773 8.10964 8.21020 8.43525 8.88093 9.45967 10.95593 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.033664 B = 0.014769 C = 0.013085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.558907 B = 1895.410925 C = 2139.389777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.144 3.856 3 H 0.051 0.949 4 C -0.535 4.535 5 H 0.076 0.924 6 C 0.077 3.923 7 N -0.893 5.893 8 Si 0.872 3.128 9 H -0.274 1.274 10 H -0.289 1.289 11 H -0.263 1.263 12 N -0.511 5.511 13 C 0.040 3.960 14 C -0.088 4.088 15 H 0.071 0.929 16 C -0.126 4.126 17 C 0.103 3.897 18 H 0.052 0.948 19 O -0.561 6.561 20 C 0.000 4.000 21 H 0.032 0.968 22 H 0.046 0.954 23 H 0.042 0.958 24 H 0.264 0.736 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.050 0.950 28 H 0.043 0.957 29 H 0.062 0.938 30 H 0.370 0.630 31 H 0.058 0.942 32 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.720 -0.978 9.306 9.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.038 3.962 3 H 0.069 0.931 4 C -0.574 4.574 5 H 0.094 0.906 6 C -0.126 4.126 7 N -0.530 5.530 8 Si 0.700 3.300 9 H -0.199 1.199 10 H -0.215 1.215 11 H -0.188 1.188 12 N -0.236 5.236 13 C -0.088 4.088 14 C -0.107 4.107 15 H 0.089 0.911 16 C -0.183 4.183 17 C 0.043 3.957 18 H 0.070 0.930 19 O -0.365 6.365 20 C -0.129 4.129 21 H 0.051 0.949 22 H 0.065 0.935 23 H 0.061 0.939 24 H 0.074 0.926 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.081 0.919 30 H 0.216 0.784 31 H 0.076 0.924 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.160 -1.155 9.553 9.624 hybrid contribution 1.151 1.078 -0.655 1.707 sum 1.311 -0.078 8.899 8.995 Atomic orbital electron populations 1.21709 0.97266 1.00370 0.98825 1.20055 0.92788 0.95488 0.87873 0.93087 1.21471 1.26865 1.02544 1.06507 0.90610 1.25142 0.95753 0.97225 0.94504 1.69924 1.33935 1.38746 1.10416 0.86974 0.79793 0.85329 0.77879 1.19913 1.21544 1.18840 1.65923 1.06555 1.11108 1.39999 1.23044 0.96884 0.89898 0.99014 1.21914 0.94209 0.95223 0.99400 0.91059 1.21471 0.99757 0.95032 1.02081 1.22534 0.85764 0.92015 0.95339 0.93001 1.86548 1.19768 1.40886 1.89342 1.23687 0.91961 0.96745 1.00502 0.94898 0.93476 0.93871 0.92574 0.91996 0.91357 0.93065 0.93761 0.91883 0.78377 0.92391 0.90312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.61 9.02 37.16 0.34 -2.28 16 2 C 0.14 3.41 2.40 -68.86 -0.17 3.25 16 3 H 0.05 1.25 4.48 -51.93 -0.23 1.02 16 4 C -0.53 -14.53 6.59 -34.44 -0.23 -14.76 16 5 H 0.08 2.27 6.72 -52.48 -0.35 1.92 16 6 C 0.08 2.17 5.08 -17.82 -0.09 2.08 16 7 N -0.89 -26.74 13.96 55.43 0.77 -25.97 16 8 Si 0.87 21.16 26.46 -169.99 -4.50 16.66 16 9 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.26 -6.20 6.20 56.52 0.35 -5.84 16 12 N -0.51 -10.99 5.40 -223.42 -1.21 -12.20 16 13 C 0.04 0.80 4.92 -2.19 -0.01 0.79 16 14 C -0.09 -1.55 3.65 -89.24 -0.33 -1.88 16 15 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 16 C -0.13 -2.11 8.16 37.16 0.30 -1.81 16 17 C 0.10 1.81 4.40 -25.35 -0.11 1.70 16 18 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 19 O -0.56 -9.60 11.56 -35.23 -0.41 -10.00 16 20 C 0.00 0.00 5.63 -2.19 -0.01 -0.01 16 21 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 23 H 0.04 0.89 7.32 -51.93 -0.38 0.51 16 24 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 25 H 0.06 1.15 7.82 -51.93 -0.41 0.75 16 26 H 0.07 1.57 5.47 -51.93 -0.28 1.29 16 27 H 0.05 0.81 7.90 -51.93 -0.41 0.40 16 28 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 1.21 7.85 -51.93 -0.41 0.81 16 30 H 0.37 4.88 9.11 45.56 0.41 5.29 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.08 1.90 5.82 -51.93 -0.30 1.60 16 LS Contribution 247.29 15.07 3.73 3.73 Total: -1.00 -29.70 247.29 -6.00 -35.70 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -4.08 Total: 5.01 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: -0.30 Total: -12.92 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: -0.43 Total: -38.17 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: -0.41 Total: -10.00 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.50 Total: 16.66 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -29.70 -6.00 -35.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307685329.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.426 kcal (2) G-P(sol) polarization free energy of solvation -29.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds