Wall clock time and date at job start Mon Mar 30 2020 02:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46949 * 2 1 4 4 C 1.50695 * 109.46872 * 240.00157 * 2 1 3 5 5 H 1.08007 * 120.00153 * 304.98987 * 4 2 1 6 6 C 1.37876 * 119.99829 * 124.99261 * 4 2 1 7 7 N 1.31517 * 119.99853 * 184.77487 * 6 4 2 8 8 Si 1.86797 * 120.00140 * 4.77228 * 6 4 2 9 9 H 1.48500 * 109.46764 * 84.64434 * 8 6 4 10 10 H 1.48500 * 109.47530 * 204.64308 * 8 6 4 11 11 H 1.48501 * 109.47030 * 324.64393 * 8 6 4 12 12 N 1.46902 * 109.46887 * 120.00543 * 2 1 3 13 13 C 1.48551 * 111.00274 * 64.45467 * 12 2 1 14 14 C 1.54377 * 104.59704 * 159.04044 * 13 12 2 15 15 H 1.08992 * 110.32763 * 95.03816 * 14 13 12 16 16 C 1.53000 * 110.32678 * 217.25186 * 14 13 12 17 17 C 1.54265 * 105.05815 * 336.14638 * 14 13 12 18 18 H 1.09000 * 110.40897 * 118.94220 * 17 14 13 19 19 O 1.42900 * 110.32321 * 241.10493 * 17 14 13 20 20 C 1.48555 * 110.99717 * 179.87451 * 12 2 1 21 21 H 1.09004 * 109.46897 * 294.95654 * 1 2 3 22 22 H 1.08996 * 109.47291 * 54.95560 * 1 2 3 23 23 H 1.09003 * 109.47163 * 174.95634 * 1 2 3 24 24 H 0.97005 * 119.99930 * 179.97438 * 7 6 4 25 25 H 1.09006 * 110.41446 * 277.81508 * 13 12 2 26 26 H 1.08999 * 110.41666 * 40.14157 * 13 12 2 27 27 H 1.09000 * 109.47273 * 175.63567 * 16 14 13 28 28 H 1.08998 * 109.46955 * 295.63651 * 16 14 13 29 29 H 1.09000 * 109.47240 * 55.63416 * 16 14 13 30 30 H 0.96705 * 113.99756 * 177.08868 * 19 17 14 31 31 H 1.09003 * 110.41475 * 82.17741 * 20 12 2 32 32 H 1.09002 * 110.41384 * 319.73494 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 1.7066 -1.7180 -1.4431 6 6 2.9077 -0.0740 -2.0848 7 7 3.2727 -0.6566 -3.2059 8 14 3.5751 1.6155 -1.6498 9 1 4.7582 1.4675 -0.7646 10 1 3.9722 2.3258 -2.8920 11 1 2.5256 2.3965 -0.9470 12 7 2.0197 -0.6926 1.1994 13 6 1.6333 -2.1269 1.1810 14 6 2.6241 -2.8092 2.1485 15 1 2.1856 -2.8926 3.1428 16 6 3.0153 -4.1912 1.6213 17 6 3.8553 -1.8804 2.1822 18 1 4.0228 -1.5077 3.1927 19 8 5.0129 -2.5734 1.7114 20 6 3.5047 -0.7151 1.2322 21 1 -0.3633 0.4336 0.9318 22 1 -0.3634 0.5901 -0.8413 23 1 -0.3633 -1.0237 -0.0903 24 1 3.8883 -0.2088 -3.8071 25 1 0.6100 -2.2496 1.5360 26 1 1.7378 -2.5360 0.1761 27 1 3.7724 -4.6277 2.2728 28 1 2.1362 -4.8354 1.6033 29 1 3.4160 -4.0951 0.6122 30 1 5.8087 -2.0258 1.6682 31 1 3.8906 0.2254 1.6256 32 1 3.9042 -0.9037 0.2357 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307685329.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:16 Heat of formation + Delta-G solvation = -73.050975 kcal Electronic energy + Delta-G solvation = -13793.845329 eV Core-core repulsion = 11560.183632 eV Total energy + Delta-G solvation = -2233.661697 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.43314 -37.29932 -35.01571 -33.68517 -31.51811 -28.50725 -27.44927 -26.40785 -23.29163 -21.03087 -20.83079 -19.02491 -18.21915 -17.01066 -16.19307 -15.84096 -15.28940 -14.94400 -14.70086 -14.26820 -14.06284 -13.38253 -13.30869 -13.15018 -12.78216 -12.69547 -12.54442 -12.03041 -11.85114 -11.69280 -11.59417 -11.31542 -11.08014 -10.76338 -10.68005 -9.08081 -8.33750 -6.39627 1.28078 1.29416 1.39071 2.27554 2.95597 3.29111 3.68520 3.79262 3.97734 4.13868 4.45750 4.50119 4.64616 4.69685 4.82083 4.85930 4.91941 4.97771 5.04686 5.19915 5.28129 5.28847 5.32340 5.43128 5.56030 5.60117 6.06734 6.31276 6.39474 6.69481 6.93298 7.29051 8.82678 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.033664 B = 0.014769 C = 0.013085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.558907 B = 1895.410925 C = 2139.389777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.144 3.856 3 H 0.049 0.951 4 C -0.526 4.526 5 H 0.031 0.969 6 C 0.022 3.978 7 N -0.945 5.945 8 Si 0.932 3.068 9 H -0.260 1.260 10 H -0.290 1.290 11 H -0.246 1.246 12 N -0.504 5.504 13 C 0.041 3.959 14 C -0.088 4.088 15 H 0.103 0.897 16 C -0.118 4.118 17 C 0.109 3.891 18 H 0.085 0.915 19 O -0.574 6.574 20 C -0.005 4.005 21 H 0.060 0.940 22 H 0.045 0.955 23 H 0.039 0.961 24 H 0.265 0.735 25 H 0.078 0.922 26 H 0.027 0.973 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.025 0.975 30 H 0.387 0.613 31 H 0.072 0.928 32 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.716 -0.011 11.947 11.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.037 3.963 3 H 0.067 0.933 4 C -0.566 4.566 5 H 0.049 0.951 6 C -0.177 4.177 7 N -0.585 5.585 8 Si 0.757 3.243 9 H -0.185 1.185 10 H -0.216 1.216 11 H -0.170 1.170 12 N -0.228 5.228 13 C -0.088 4.088 14 C -0.107 4.107 15 H 0.121 0.879 16 C -0.176 4.176 17 C 0.049 3.951 18 H 0.103 0.897 19 O -0.381 6.381 20 C -0.134 4.134 21 H 0.079 0.921 22 H 0.064 0.936 23 H 0.058 0.942 24 H 0.074 0.926 25 H 0.096 0.904 26 H 0.045 0.955 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.045 0.955 30 H 0.236 0.764 31 H 0.091 0.909 32 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 0.155 -0.188 12.219 12.221 hybrid contribution 1.126 0.680 -1.482 1.981 sum 1.281 0.492 10.737 10.824 Atomic orbital electron populations 1.21635 0.95350 1.00490 1.00241 1.20037 0.94407 0.94944 0.86958 0.93335 1.21612 1.26289 1.00843 1.07817 0.95051 1.25949 0.96149 1.01379 0.94228 1.70075 1.35460 1.40913 1.12022 0.86001 0.79912 0.80514 0.77889 1.18458 1.21633 1.17003 1.65880 1.07224 1.11736 1.37928 1.23040 0.98776 0.89186 0.97777 1.22000 0.93679 0.94979 1.00046 0.87854 1.21388 1.00698 0.95387 1.00128 1.22552 0.85970 0.90682 0.95862 0.89677 1.86519 1.20488 1.41575 1.89476 1.23764 0.91214 0.99039 0.99346 0.92147 0.93605 0.94200 0.92616 0.90397 0.95455 0.91618 0.92182 0.95533 0.76438 0.90923 0.94416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.85 9.02 71.98 0.65 -4.20 16 2 C 0.14 6.67 2.40 44.17 0.11 6.78 16 3 H 0.05 2.28 4.48 -2.39 -0.01 2.27 16 4 C -0.53 -29.41 6.59 25.60 0.17 -29.24 16 5 H 0.03 1.99 6.72 -2.91 -0.02 1.97 16 6 C 0.02 1.23 5.08 84.65 0.43 1.66 16 7 N -0.94 -58.78 13.96 21.45 0.30 -58.48 16 8 Si 0.93 43.52 26.46 68.60 1.82 45.34 16 9 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 10 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 11 H -0.25 -10.71 6.20 99.48 0.62 -10.10 16 12 N -0.50 -20.80 5.40 -860.75 -4.65 -25.45 16 13 C 0.04 1.58 4.92 86.45 0.42 2.01 16 14 C -0.09 -2.86 3.65 -9.90 -0.04 -2.90 16 15 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 16 C -0.12 -3.82 8.16 71.98 0.59 -3.23 16 17 C 0.11 3.52 4.40 31.49 0.14 3.66 16 18 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 19 O -0.57 -18.56 11.56 -148.98 -1.72 -20.28 16 20 C 0.00 -0.18 5.63 86.45 0.49 0.31 16 21 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 22 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 23 H 0.04 1.61 7.32 -2.39 -0.02 1.59 16 24 H 0.26 15.49 8.31 -92.70 -0.77 14.72 16 25 H 0.08 2.76 7.82 -2.38 -0.02 2.74 16 26 H 0.03 1.30 5.47 -2.39 -0.01 1.29 16 27 H 0.06 1.92 7.90 -2.39 -0.02 1.90 16 28 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.03 1.02 7.85 -2.39 -0.02 1.00 16 30 H 0.39 9.43 9.11 -74.05 -0.67 8.75 16 31 H 0.07 2.63 8.14 -2.39 -0.02 2.62 16 32 H 0.04 1.82 5.82 -2.39 -0.01 1.81 16 Total: -1.00 -65.42 247.29 -0.96 -66.39 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: 0.34 Total: 17.63 kcal Atomic # 6 Polarization: -28.11 SS G_CDS: 2.96 Total: -25.16 kcal Atomic # 7 Polarization: -79.57 SS G_CDS: -4.35 Total: -83.92 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -1.72 Total: -20.28 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 1.82 Total: 45.34 kcal Total: -65.42 -0.96 -66.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307685329.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.664 kcal (2) G-P(sol) polarization free energy of solvation -65.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds