Wall clock time and date at job start Mon Mar 30 2020 02:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47812 * 2 1 4 4 C 1.50709 * 109.47101 * 239.99945 * 2 1 3 5 5 H 1.08000 * 120.00102 * 245.39042 * 4 2 1 6 6 C 1.37877 * 119.99524 * 65.38802 * 4 2 1 7 7 N 1.31515 * 119.99780 * 185.15379 * 6 4 2 8 8 Si 1.86800 * 120.00318 * 5.16029 * 6 4 2 9 9 H 1.48500 * 109.46831 * 270.00099 * 8 6 4 10 10 H 1.48499 * 109.46967 * 29.99670 * 8 6 4 11 11 H 1.48495 * 109.47245 * 149.99750 * 8 6 4 12 12 N 1.46906 * 109.47444 * 120.00332 * 2 1 3 13 13 C 1.47902 * 110.99863 * 294.99844 * 12 2 1 14 14 C 1.53990 * 107.05918 * 214.15622 * 13 12 2 15 15 H 1.09001 * 110.31104 * 120.14220 * 14 13 12 16 16 C 1.53008 * 110.30471 * 242.30797 * 14 13 12 17 17 C 1.54593 * 105.13832 * 1.22086 * 14 13 12 18 18 H 1.08997 * 110.72851 * 263.60121 * 17 14 13 19 19 O 1.42905 * 110.72278 * 140.49610 * 17 14 13 20 20 C 1.48528 * 111.00059 * 177.59964 * 12 2 1 21 21 H 1.08999 * 109.46930 * 295.00914 * 1 2 3 22 22 H 1.08995 * 109.46839 * 55.01335 * 1 2 3 23 23 H 1.09001 * 109.47403 * 175.01572 * 1 2 3 24 24 H 0.97002 * 119.99973 * 355.00238 * 7 6 4 25 25 H 1.09005 * 109.91649 * 333.51207 * 13 12 2 26 26 H 1.09003 * 109.91787 * 94.59871 * 13 12 2 27 27 H 1.08998 * 109.46876 * 58.54885 * 16 14 13 28 28 H 1.09005 * 109.46825 * 178.54482 * 16 14 13 29 29 H 1.08993 * 109.46936 * 298.54361 * 16 14 13 30 30 H 0.96698 * 113.99937 * 179.97438 * 19 17 14 31 31 H 1.08997 * 110.67232 * 278.15204 * 20 12 2 32 32 H 1.09004 * 110.67226 * 41.28808 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.5795 -1.6365 -1.1338 6 6 1.7932 -0.1781 -2.4797 7 7 2.1416 -0.8469 -3.5572 8 14 0.9746 1.4931 -2.6418 9 1 -0.4987 1.3183 -2.7074 10 1 1.3217 2.3305 -1.4656 11 1 1.4498 2.1590 -3.8811 12 7 2.0197 -0.6926 1.1994 13 6 1.6463 0.0440 2.4264 14 6 2.7916 -0.1517 3.4370 15 1 3.2200 0.8114 3.7145 16 6 2.2836 -0.8860 4.6795 17 6 3.8407 -1.0124 2.6965 18 1 3.7219 -2.0663 2.9477 19 8 5.1646 -0.5682 3.0003 20 6 3.5033 -0.7629 1.2050 21 1 -0.3633 0.4345 0.9313 22 1 -0.3633 0.5892 -0.8419 23 1 -0.3634 -1.0238 -0.0893 24 1 2.6314 -1.6801 -3.4736 25 1 1.5266 1.1039 2.2013 26 1 0.7170 -0.3564 2.8316 27 1 1.8698 -1.8512 4.3873 28 1 3.1098 -1.0400 5.3736 29 1 1.5094 -0.2900 5.1626 30 1 5.8603 -1.0760 2.5608 31 1 3.8516 -1.5911 0.5880 32 1 3.9344 0.1790 0.8654 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307685331.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:19 Heat of formation + Delta-G solvation = -77.854304 kcal Electronic energy + Delta-G solvation = -13444.517634 eV Core-core repulsion = 11210.647650 eV Total energy + Delta-G solvation = -2233.869985 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.48544 -37.37858 -35.49744 -33.79159 -31.59055 -28.93109 -27.13613 -25.93437 -23.16741 -21.60880 -20.72748 -19.68173 -18.41450 -17.09966 -16.11238 -15.68664 -15.37357 -14.95163 -14.86514 -14.28551 -14.09288 -13.83295 -13.33915 -13.27531 -12.96247 -12.55631 -12.40307 -12.19612 -11.92774 -11.79601 -11.61687 -11.39243 -10.89973 -10.79632 -10.66471 -9.21321 -8.75917 -6.40068 1.38685 1.48734 1.65048 2.43344 2.94587 3.06849 3.51927 3.63075 3.76322 3.99777 4.28543 4.43744 4.50534 4.59629 4.64743 4.70451 4.72946 4.88491 4.94576 4.98751 5.00399 5.09200 5.19413 5.37283 5.46122 5.74762 5.97091 6.09766 6.38555 6.66010 6.79188 7.38695 8.64059 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.047333 B = 0.010706 C = 0.009620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.412224 B = 2614.801597 C = 2909.807817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.173 3.827 3 H -0.009 1.009 4 C -0.579 4.579 5 H 0.024 0.976 6 C -0.026 4.026 7 N -0.946 5.946 8 Si 1.091 2.909 9 H -0.258 1.258 10 H -0.260 1.260 11 H -0.291 1.291 12 N -0.515 5.515 13 C 0.035 3.965 14 C -0.093 4.093 15 H 0.079 0.921 16 C -0.131 4.131 17 C 0.109 3.891 18 H 0.080 0.920 19 O -0.573 6.573 20 C 0.026 3.974 21 H 0.062 0.938 22 H 0.043 0.957 23 H 0.047 0.953 24 H 0.251 0.749 25 H 0.036 0.964 26 H 0.091 0.909 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.394 0.606 31 H 0.056 0.944 32 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.091 2.467 14.758 14.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.064 3.936 3 H 0.009 0.991 4 C -0.617 4.617 5 H 0.042 0.958 6 C -0.223 4.223 7 N -0.583 5.583 8 Si 0.914 3.086 9 H -0.184 1.184 10 H -0.185 1.185 11 H -0.218 1.218 12 N -0.241 5.241 13 C -0.092 4.092 14 C -0.112 4.112 15 H 0.097 0.903 16 C -0.188 4.188 17 C 0.050 3.950 18 H 0.097 0.903 19 O -0.380 6.380 20 C -0.103 4.103 21 H 0.080 0.920 22 H 0.062 0.938 23 H 0.066 0.934 24 H 0.060 0.940 25 H 0.054 0.946 26 H 0.110 0.890 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.244 0.756 31 H 0.075 0.925 32 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -1.056 3.446 14.023 14.479 hybrid contribution 1.568 -1.134 -0.045 1.936 sum 0.513 2.312 13.978 14.177 Atomic orbital electron populations 1.21964 0.96201 1.01118 1.00078 1.19833 0.93451 0.91586 0.88714 0.99137 1.22203 1.38192 1.08684 0.92669 0.95771 1.27134 0.96994 1.06414 0.91796 1.70937 1.39030 1.16982 1.31316 0.83417 0.77031 0.71937 0.76209 1.18363 1.18480 1.21775 1.64602 1.08784 1.48469 1.02208 1.23077 0.99174 0.96558 0.90437 1.21962 0.93584 0.99702 0.95947 0.90301 1.21754 1.01448 1.00247 0.95343 1.22803 0.82660 0.97985 0.91579 0.90262 1.86416 1.15777 1.62631 1.73195 1.23550 0.89762 0.99491 0.97511 0.91959 0.93844 0.93353 0.93995 0.94554 0.89031 0.92254 0.91733 0.90834 0.75648 0.92521 0.95634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.78 8.85 71.98 0.64 -5.14 16 2 C 0.17 8.30 1.35 44.17 0.06 8.36 16 3 H -0.01 -0.44 6.46 -2.39 -0.02 -0.45 16 4 C -0.58 -33.45 8.34 25.60 0.21 -33.24 16 5 H 0.02 1.54 7.22 -2.91 -0.02 1.52 16 6 C -0.03 -1.56 5.43 84.65 0.46 -1.10 16 7 N -0.95 -60.25 13.70 21.45 0.29 -59.95 16 8 Si 1.09 51.31 25.29 68.60 1.73 53.05 16 9 H -0.26 -11.10 6.81 99.48 0.68 -10.43 16 10 H -0.26 -11.21 6.36 99.48 0.63 -10.57 16 11 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 12 N -0.52 -21.67 5.10 -862.22 -4.40 -26.07 16 13 C 0.04 1.17 5.15 86.44 0.45 1.61 16 14 C -0.09 -2.62 3.35 -9.91 -0.03 -2.66 16 15 H 0.08 2.24 8.08 -2.39 -0.02 2.23 16 16 C -0.13 -2.80 8.89 71.98 0.64 -2.16 16 17 C 0.11 3.34 3.98 31.80 0.13 3.47 16 18 H 0.08 2.25 7.86 -2.39 -0.02 2.23 16 19 O -0.57 -16.06 13.41 -148.98 -2.00 -18.06 16 20 C 0.03 1.03 5.42 86.65 0.47 1.50 16 21 H 0.06 2.19 7.16 -2.39 -0.02 2.17 16 22 H 0.04 1.83 4.40 -2.39 -0.01 1.82 16 23 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 24 H 0.25 16.24 8.72 -92.71 -0.81 15.44 16 25 H 0.04 1.22 7.65 -2.38 -0.02 1.20 16 26 H 0.09 2.69 7.64 -2.39 -0.02 2.67 16 27 H 0.06 1.29 8.13 -2.39 -0.02 1.27 16 28 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 29 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.39 7.91 9.12 -74.06 -0.68 7.23 16 31 H 0.06 2.46 7.42 -2.39 -0.02 2.45 16 32 H 0.03 1.11 8.02 -2.39 -0.02 1.09 16 Total: -1.00 -67.76 250.83 -1.07 -68.83 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: 0.28 Total: 11.55 kcal Atomic # 6 Polarization: -32.37 SS G_CDS: 3.02 Total: -29.35 kcal Atomic # 7 Polarization: -81.92 SS G_CDS: -4.10 Total: -86.02 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: -2.00 Total: -18.06 kcal Atomic # 14 Polarization: 51.31 SS G_CDS: 1.73 Total: 53.05 kcal Total: -67.76 -1.07 -68.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307685331.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.024 kcal (2) G-P(sol) polarization free energy of solvation -67.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds