Wall clock time and date at job start Mon Mar 30 2020 02:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.47253 * 2 1 4 4 C 1.50705 * 109.47298 * 119.99703 * 2 1 3 5 5 H 1.07995 * 119.99828 * 114.45314 * 4 2 1 6 6 C 1.37875 * 119.99613 * 294.45959 * 4 2 1 7 7 N 1.31513 * 120.00374 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99608 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47247 * 89.99973 * 8 6 4 10 10 H 1.48505 * 109.47141 * 209.99755 * 8 6 4 11 11 H 1.48500 * 109.47505 * 330.00096 * 8 6 4 12 12 N 1.46899 * 109.47245 * 239.99520 * 2 1 3 13 13 C 1.48536 * 110.99813 * 62.02288 * 12 2 1 14 14 C 1.54935 * 103.22694 * 159.72001 * 13 12 2 15 15 H 1.08999 * 110.87695 * 81.01458 * 14 13 12 16 16 C 1.53004 * 110.72552 * 204.22917 * 14 13 12 17 17 C 1.54596 * 102.92183 * 322.58376 * 14 13 12 18 18 H 1.09008 * 110.39286 * 140.91685 * 17 14 13 19 19 O 1.42898 * 110.31221 * 263.04231 * 17 14 13 20 20 C 1.47903 * 111.00275 * 179.41663 * 12 2 1 21 21 H 1.09001 * 109.47330 * 300.00063 * 1 2 3 22 22 H 1.08999 * 109.47165 * 60.00332 * 1 2 3 23 23 H 1.09003 * 109.47253 * 179.97438 * 1 2 3 24 24 H 0.97004 * 119.99706 * 179.97438 * 7 6 4 25 25 H 1.08995 * 110.66810 * 278.15601 * 13 12 2 26 26 H 1.09000 * 110.66533 * 41.28791 * 13 12 2 27 27 H 1.09001 * 109.47103 * 173.50020 * 16 14 13 28 28 H 1.09002 * 109.46933 * 293.50318 * 16 14 13 29 29 H 1.08997 * 109.46968 * 53.50089 * 16 14 13 30 30 H 0.96707 * 114.00247 * 177.17377 * 19 17 14 31 31 H 1.09007 * 109.91579 * 333.51535 * 20 12 2 32 32 H 1.09001 * 109.91845 * 94.80000 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5773 -1.6377 1.1340 6 6 1.7960 -0.1763 2.4795 7 7 1.1326 0.9531 2.5970 8 14 2.4181 -1.0572 4.0048 9 1 3.7847 -0.5767 4.3312 10 1 1.5089 -0.7753 5.1447 11 1 2.4552 -2.5200 3.7513 12 7 2.0196 -0.6926 -1.1994 13 6 1.5837 0.0086 -2.4341 14 6 2.5795 -0.5055 -3.5040 15 1 2.2792 -1.4855 -3.8751 16 6 2.7000 0.4939 -4.6562 17 6 3.9092 -0.6009 -2.7213 18 1 4.4632 -1.4907 -3.0206 19 8 4.6983 0.5704 -2.9394 20 6 3.4980 -0.7002 -1.2406 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 0.9660 1.3286 3.4758 25 1 0.5623 -0.2693 -2.6941 26 1 1.6712 1.0884 -2.3146 27 1 3.4870 0.1701 -5.3373 28 1 1.7529 0.5451 -5.1934 29 1 2.9459 1.4786 -4.2588 30 1 5.5256 0.5862 -2.4389 31 1 3.8893 0.1544 -0.6884 32 1 3.8768 -1.6278 -0.8114 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307685332.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:20 Heat of formation + Delta-G solvation = -52.779705 kcal Electronic energy + Delta-G solvation = -13448.805903 eV Core-core repulsion = 11216.023235 eV Total energy + Delta-G solvation = -2232.782668 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.92052 -35.62304 -33.51972 -31.73666 -29.50537 -27.13067 -25.58773 -24.46042 -21.52696 -19.59331 -19.42707 -17.06123 -16.19912 -15.38729 -14.52643 -14.05215 -13.73421 -13.46639 -13.21595 -12.45673 -12.05705 -11.71706 -11.66696 -11.46113 -10.98571 -10.76424 -10.64819 -10.60626 -10.32681 -10.12403 -9.98175 -9.77132 -9.44171 -8.88152 -8.43975 -7.26391 -6.01653 -4.05358 3.29773 3.36561 3.40713 4.40342 4.52693 4.95774 5.15003 5.26930 5.31216 5.41260 5.74033 5.87912 5.96234 6.09755 6.23792 6.42121 6.43304 6.55501 6.64105 6.73603 6.83484 7.04642 7.07520 7.46833 7.61375 7.83752 7.93994 8.11208 8.29338 8.56494 9.02259 9.59766 11.06709 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.050959 B = 0.009978 C = 0.009017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.328427 B = 2805.613914 C = 3104.375332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.203 3.797 3 H 0.004 0.996 4 C -0.503 4.503 5 H 0.061 0.939 6 C 0.058 3.942 7 N -0.894 5.894 8 Si 0.896 3.104 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.511 5.511 13 C 0.041 3.959 14 C -0.090 4.090 15 H 0.084 0.916 16 C -0.128 4.128 17 C 0.091 3.909 18 H 0.056 0.944 19 O -0.565 6.565 20 C 0.023 3.977 21 H 0.075 0.925 22 H 0.009 0.991 23 H 0.035 0.965 24 H 0.260 0.740 25 H 0.072 0.928 26 H 0.038 0.962 27 H 0.050 0.950 28 H 0.047 0.953 29 H 0.061 0.939 30 H 0.373 0.627 31 H 0.053 0.947 32 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.048 -1.748 -9.265 10.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.097 3.903 3 H 0.022 0.978 4 C -0.542 4.542 5 H 0.079 0.921 6 C -0.143 4.143 7 N -0.533 5.533 8 Si 0.724 3.276 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.198 1.198 12 N -0.236 5.236 13 C -0.087 4.087 14 C -0.109 4.109 15 H 0.102 0.898 16 C -0.186 4.186 17 C 0.031 3.969 18 H 0.074 0.926 19 O -0.370 6.370 20 C -0.106 4.106 21 H 0.094 0.906 22 H 0.028 0.972 23 H 0.054 0.946 24 H 0.070 0.930 25 H 0.090 0.910 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.220 0.780 31 H 0.071 0.929 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.259 -2.000 -9.469 10.212 hybrid contribution 1.047 0.241 1.413 1.776 sum 4.306 -1.759 -8.056 9.303 Atomic orbital electron populations 1.21736 0.97811 0.99473 0.99494 1.19452 0.92341 0.92259 0.86295 0.97812 1.21097 1.35047 1.08050 0.89991 0.92125 1.24954 0.95317 0.95002 0.99030 1.69932 1.40676 1.19018 1.23628 0.86537 0.78504 0.80065 0.82537 1.20830 1.21238 1.19848 1.64890 1.05990 1.50130 1.02602 1.23209 0.98151 0.96591 0.90769 1.22145 0.93665 0.99727 0.95348 0.89773 1.21476 1.00252 0.99815 0.97048 1.22794 0.91971 0.86689 0.95412 0.92636 1.86499 1.36338 1.43142 1.71007 1.23341 0.91463 1.01726 0.94049 0.90640 0.97207 0.94582 0.92987 0.91004 0.94369 0.93135 0.93383 0.92024 0.78031 0.92906 0.90982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 8.93 37.15 0.33 -2.83 16 2 C 0.20 5.27 1.63 -68.87 -0.11 5.16 16 3 H 0.00 0.12 8.00 -51.93 -0.42 -0.29 16 4 C -0.50 -14.00 7.95 -34.44 -0.27 -14.28 16 5 H 0.06 1.69 7.47 -52.49 -0.39 1.30 16 6 C 0.06 1.63 5.33 -17.82 -0.09 1.54 16 7 N -0.89 -25.91 11.74 55.43 0.65 -25.26 16 8 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 12 N -0.51 -11.37 5.10 -223.89 -1.14 -12.51 16 13 C 0.04 0.79 4.94 -1.90 -0.01 0.78 16 14 C -0.09 -1.44 3.64 -88.76 -0.32 -1.76 16 15 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 16 C -0.13 -1.82 8.57 37.16 0.32 -1.50 16 17 C 0.09 1.46 4.23 -25.38 -0.11 1.35 16 18 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 19 O -0.56 -8.68 11.69 -35.23 -0.41 -9.09 16 20 C 0.02 0.46 5.56 -2.76 -0.02 0.44 16 21 H 0.07 2.04 6.52 -51.93 -0.34 1.70 16 22 H 0.01 0.20 6.99 -51.93 -0.36 -0.16 16 23 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 24 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 25 H 0.07 1.32 7.67 -51.93 -0.40 0.93 16 26 H 0.04 0.78 7.85 -51.93 -0.41 0.38 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.96 7.49 -51.93 -0.39 0.57 16 30 H 0.37 4.29 9.11 45.56 0.41 4.70 16 31 H 0.05 1.14 7.53 -51.93 -0.39 0.75 16 32 H 0.07 1.41 8.00 -51.93 -0.42 1.00 16 LS Contribution 255.81 15.07 3.86 3.86 Total: -1.00 -29.96 255.81 -6.70 -36.66 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -4.34 Total: 0.97 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -0.29 Total: -11.10 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: -0.49 Total: -37.77 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: -0.41 Total: -9.09 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -29.96 -6.70 -36.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307685332.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.116 kcal (2) G-P(sol) polarization free energy of solvation -29.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds