Wall clock time and date at job start Mon Mar 30 2020 02:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.47253 * 2 1 4 4 C 1.50705 * 109.47298 * 119.99703 * 2 1 3 5 5 H 1.07995 * 119.99828 * 114.45314 * 4 2 1 6 6 C 1.37875 * 119.99613 * 294.45959 * 4 2 1 7 7 N 1.31513 * 120.00374 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99608 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47247 * 89.99973 * 8 6 4 10 10 H 1.48505 * 109.47141 * 209.99755 * 8 6 4 11 11 H 1.48500 * 109.47505 * 330.00096 * 8 6 4 12 12 N 1.46899 * 109.47245 * 239.99520 * 2 1 3 13 13 C 1.48536 * 110.99813 * 62.02288 * 12 2 1 14 14 C 1.54935 * 103.22694 * 159.72001 * 13 12 2 15 15 H 1.08999 * 110.87695 * 81.01458 * 14 13 12 16 16 C 1.53004 * 110.72552 * 204.22917 * 14 13 12 17 17 C 1.54596 * 102.92183 * 322.58376 * 14 13 12 18 18 H 1.09008 * 110.39286 * 140.91685 * 17 14 13 19 19 O 1.42898 * 110.31221 * 263.04231 * 17 14 13 20 20 C 1.47903 * 111.00275 * 179.41663 * 12 2 1 21 21 H 1.09001 * 109.47330 * 300.00063 * 1 2 3 22 22 H 1.08999 * 109.47165 * 60.00332 * 1 2 3 23 23 H 1.09003 * 109.47253 * 179.97438 * 1 2 3 24 24 H 0.97004 * 119.99706 * 179.97438 * 7 6 4 25 25 H 1.08995 * 110.66810 * 278.15601 * 13 12 2 26 26 H 1.09000 * 110.66533 * 41.28791 * 13 12 2 27 27 H 1.09001 * 109.47103 * 173.50020 * 16 14 13 28 28 H 1.09002 * 109.46933 * 293.50318 * 16 14 13 29 29 H 1.08997 * 109.46968 * 53.50089 * 16 14 13 30 30 H 0.96707 * 114.00247 * 177.17377 * 19 17 14 31 31 H 1.09007 * 109.91579 * 333.51535 * 20 12 2 32 32 H 1.09001 * 109.91845 * 94.80000 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5773 -1.6377 1.1340 6 6 1.7960 -0.1763 2.4795 7 7 1.1326 0.9531 2.5970 8 14 2.4181 -1.0572 4.0048 9 1 3.7847 -0.5767 4.3312 10 1 1.5089 -0.7753 5.1447 11 1 2.4552 -2.5200 3.7513 12 7 2.0196 -0.6926 -1.1994 13 6 1.5837 0.0086 -2.4341 14 6 2.5795 -0.5055 -3.5040 15 1 2.2792 -1.4855 -3.8751 16 6 2.7000 0.4939 -4.6562 17 6 3.9092 -0.6009 -2.7213 18 1 4.4632 -1.4907 -3.0206 19 8 4.6983 0.5704 -2.9394 20 6 3.4980 -0.7002 -1.2406 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 0.9660 1.3286 3.4758 25 1 0.5623 -0.2693 -2.6941 26 1 1.6712 1.0884 -2.3146 27 1 3.4870 0.1701 -5.3373 28 1 1.7529 0.5451 -5.1934 29 1 2.9459 1.4786 -4.2588 30 1 5.5256 0.5862 -2.4389 31 1 3.8893 0.1544 -0.6884 32 1 3.8768 -1.6278 -0.8114 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307685332.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:20 Heat of formation + Delta-G solvation = -75.529853 kcal Electronic energy + Delta-G solvation = -13449.792424 eV Core-core repulsion = 11216.023235 eV Total energy + Delta-G solvation = -2233.769189 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.41087 -37.17986 -35.25100 -33.45677 -31.24138 -28.78823 -27.37581 -26.18676 -23.16983 -21.34087 -20.91353 -18.37103 -18.29207 -17.09587 -16.32644 -15.43806 -15.35337 -15.14861 -14.84382 -14.10071 -13.54371 -13.35848 -13.16696 -13.11136 -12.85307 -12.60001 -12.46414 -12.28083 -12.04981 -11.88064 -11.55462 -11.29650 -10.95730 -10.80874 -10.57303 -9.09343 -8.15756 -6.27408 1.39550 1.40846 1.51936 2.39883 3.14202 3.23013 3.51600 3.71338 3.90479 4.10066 4.38460 4.58612 4.68206 4.72774 4.80584 4.86611 4.93123 4.98251 5.00862 5.13104 5.20064 5.26434 5.39952 5.52111 5.68054 5.68518 6.15423 6.28836 6.59659 6.86526 6.89453 7.42258 8.92226 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.050959 B = 0.009978 C = 0.009017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.328427 B = 2805.613914 C = 3104.375332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.208 3.792 3 H -0.039 1.039 4 C -0.519 4.519 5 H 0.056 0.944 6 C 0.009 3.991 7 N -0.923 5.923 8 Si 0.963 3.037 9 H -0.275 1.275 10 H -0.282 1.282 11 H -0.267 1.267 12 N -0.519 5.519 13 C 0.038 3.962 14 C -0.085 4.085 15 H 0.104 0.896 16 C -0.121 4.121 17 C 0.101 3.899 18 H 0.087 0.913 19 O -0.573 6.573 20 C 0.021 3.979 21 H 0.049 0.951 22 H 0.029 0.971 23 H 0.037 0.963 24 H 0.262 0.738 25 H 0.079 0.921 26 H 0.017 0.983 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.042 0.958 30 H 0.389 0.611 31 H 0.025 0.975 32 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.760 -2.986 -10.283 11.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.101 3.899 3 H -0.021 1.021 4 C -0.557 4.557 5 H 0.075 0.925 6 C -0.190 4.190 7 N -0.563 5.563 8 Si 0.788 3.212 9 H -0.201 1.201 10 H -0.208 1.208 11 H -0.191 1.191 12 N -0.244 5.244 13 C -0.090 4.090 14 C -0.104 4.104 15 H 0.123 0.877 16 C -0.178 4.178 17 C 0.041 3.959 18 H 0.105 0.895 19 O -0.381 6.381 20 C -0.108 4.108 21 H 0.068 0.932 22 H 0.048 0.952 23 H 0.056 0.944 24 H 0.071 0.929 25 H 0.098 0.902 26 H 0.036 0.964 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.061 0.939 30 H 0.239 0.761 31 H 0.043 0.957 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.988 -3.241 -10.502 11.693 hybrid contribution 0.837 0.660 1.702 2.008 sum 4.826 -2.581 -8.801 10.364 Atomic orbital electron populations 1.21561 0.97259 0.99344 0.99212 1.19233 0.92777 0.90083 0.87802 1.02127 1.21343 1.35228 1.08021 0.91122 0.92529 1.25784 0.95417 0.95689 1.02114 1.70062 1.41550 1.20304 1.24370 0.85487 0.78070 0.79065 0.78607 1.20121 1.20772 1.19133 1.64801 1.07637 1.49669 1.02291 1.23287 0.99750 0.95276 0.90668 1.22203 0.92294 1.01073 0.94826 0.87748 1.21415 1.01790 0.98133 0.96506 1.22722 0.92679 0.88119 0.92340 0.89517 1.86470 1.37328 1.43078 1.71190 1.23412 0.89979 1.00456 0.96948 0.93168 0.95200 0.94404 0.92887 0.90227 0.96424 0.91445 0.91719 0.93931 0.76114 0.95693 0.90993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.85 8.93 71.98 0.64 -5.21 16 2 C 0.21 11.10 1.63 44.17 0.07 11.18 16 3 H -0.04 -2.35 8.00 -2.39 -0.02 -2.37 16 4 C -0.52 -29.32 7.95 25.60 0.20 -29.12 16 5 H 0.06 3.17 7.47 -2.91 -0.02 3.15 16 6 C 0.01 0.48 5.33 84.65 0.45 0.93 16 7 N -0.92 -54.64 11.74 21.45 0.25 -54.39 16 8 Si 0.96 44.23 29.54 68.60 2.03 46.26 16 9 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 10 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 11 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 12 N -0.52 -23.08 5.10 -862.24 -4.40 -27.48 16 13 C 0.04 1.44 4.94 86.65 0.43 1.87 16 14 C -0.09 -2.51 3.64 -9.59 -0.03 -2.54 16 15 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 16 C -0.12 -3.08 8.57 71.98 0.62 -2.46 16 17 C 0.10 3.02 4.23 31.47 0.13 3.15 16 18 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 19 O -0.57 -16.52 11.69 -148.98 -1.74 -18.27 16 20 C 0.02 0.82 5.56 86.44 0.48 1.30 16 21 H 0.05 2.77 6.52 -2.39 -0.02 2.76 16 22 H 0.03 1.33 6.99 -2.39 -0.02 1.32 16 23 H 0.04 1.84 8.14 -2.39 -0.02 1.83 16 24 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 25 H 0.08 2.83 7.67 -2.39 -0.02 2.81 16 26 H 0.02 0.73 7.85 -2.39 -0.02 0.71 16 27 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.04 1.24 7.49 -2.39 -0.02 1.23 16 30 H 0.39 8.27 9.11 -74.05 -0.67 7.60 16 31 H 0.02 1.10 7.53 -2.38 -0.02 1.08 16 32 H 0.07 2.78 8.00 -2.39 -0.02 2.76 16 Total: -1.00 -64.60 255.81 -0.45 -65.06 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: 0.41 Total: 9.72 kcal Atomic # 6 Polarization: -23.89 SS G_CDS: 2.99 Total: -20.90 kcal Atomic # 7 Polarization: -77.72 SS G_CDS: -4.15 Total: -81.87 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -1.74 Total: -18.27 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -64.60 -0.45 -65.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307685332.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.474 kcal (2) G-P(sol) polarization free energy of solvation -64.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds