Wall clock time and date at job start Mon Mar 30 2020 02:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.50842 * 2 1 4 4 C 1.53124 * 109.50389 * 120.08126 * 2 1 3 5 5 C 1.53124 * 109.15906 * 177.63520 * 4 2 1 6 6 H 1.09001 * 109.50683 * 62.32097 * 5 4 2 7 7 O 1.42898 * 109.49943 * 182.40334 * 5 4 2 8 8 C 1.53042 * 109.27479 * 302.34041 * 5 4 2 9 9 N 1.46846 * 109.52201 * 59.18606 * 8 5 4 10 10 C 1.46899 * 110.99821 * 174.16116 * 9 8 5 11 11 C 1.50698 * 109.47375 * 59.31414 * 10 9 8 12 12 H 1.07997 * 120.00199 * 5.00577 * 11 10 9 13 13 C 1.37881 * 119.99861 * 185.00360 * 11 10 9 14 14 N 1.31515 * 119.99993 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00017 * 179.97438 * 13 11 10 16 16 H 1.48507 * 109.46887 * 0.02562 * 15 13 11 17 17 H 1.48495 * 109.46938 * 120.00014 * 15 13 11 18 18 H 1.48497 * 109.47047 * 240.00513 * 15 13 11 19 19 C 1.46846 * 111.19602 * 298.25082 * 9 8 5 20 20 H 1.09000 * 109.46682 * 299.91897 * 1 2 3 21 21 H 1.08991 * 109.46885 * 59.91991 * 1 2 3 22 22 H 1.08999 * 109.47093 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.52517 * 57.72509 * 4 2 1 24 24 H 1.09004 * 109.57260 * 297.56687 * 4 2 1 25 25 H 0.96708 * 113.99863 * 179.97438 * 7 5 4 26 26 H 1.09000 * 109.45739 * 179.19802 * 8 5 4 27 27 H 1.08999 * 109.46400 * 299.16771 * 8 5 4 28 28 H 1.09005 * 109.47179 * 179.31876 * 10 9 8 29 29 H 1.09002 * 109.46645 * 299.31430 * 10 9 8 30 30 H 0.97001 * 119.99628 * 179.97438 * 14 13 11 31 31 H 1.09001 * 109.46639 * 301.73210 * 19 9 8 32 32 H 1.08997 * 109.46147 * 181.75899 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0412 -0.7235 1.2490 5 6 3.5713 -0.7707 1.2114 6 1 3.9674 0.2446 1.2312 7 8 4.0541 -1.4934 2.3457 8 6 4.0237 -1.4717 -0.0715 9 7 3.5101 -0.7412 -1.2372 10 6 4.0387 -1.3049 -2.4865 11 6 3.6389 -2.7540 -2.5926 12 1 2.9842 -3.1891 -1.8521 13 6 4.1090 -3.5243 -3.6351 14 7 4.9066 -2.9945 -4.5366 15 14 3.6141 -5.3207 -3.7662 16 1 2.7170 -5.6708 -2.6356 17 1 2.9025 -5.5457 -5.0500 18 1 4.8287 -6.1736 -3.7173 19 6 2.0417 -0.7234 -1.2478 20 1 -0.3633 0.5126 0.8907 21 1 -0.3633 0.5150 -0.8892 22 1 -0.3633 -1.0277 -0.0005 23 1 1.6458 -1.7389 1.2692 24 1 1.7151 -0.1877 2.1405 25 1 5.0178 -1.5633 2.3864 26 1 5.1129 -1.4943 -0.1082 27 1 3.6388 -2.4914 -0.0834 28 1 3.6329 -0.7530 -3.3345 29 1 5.1259 -1.2267 -2.4889 30 1 5.2376 -3.5365 -5.2697 31 1 1.6661 -1.7466 -1.2541 32 1 1.6913 -0.2025 -2.1388 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307691252.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:24 Heat of formation + Delta-G solvation = -88.951884 kcal Electronic energy + Delta-G solvation = -13387.246299 eV Core-core repulsion = 11152.895087 eV Total energy + Delta-G solvation = -2234.351212 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.33867 -37.27200 -35.70593 -34.12093 -31.21215 -28.82176 -27.44598 -25.80147 -23.07831 -22.30290 -20.72516 -18.54137 -18.01270 -16.92540 -16.32712 -16.18437 -15.56025 -15.21636 -14.59651 -14.27061 -13.71775 -13.61650 -13.40857 -12.91141 -12.86130 -12.77444 -12.68052 -12.20886 -12.11058 -11.82986 -11.60685 -11.49456 -11.11758 -10.75485 -10.65130 -9.10084 -8.20003 -6.39814 1.32409 1.33894 1.45619 2.33510 3.04413 3.08438 3.48388 3.91856 3.99138 4.12340 4.21426 4.41674 4.57488 4.70460 4.76976 4.90845 4.92779 4.98050 5.04420 5.14257 5.22870 5.24441 5.29956 5.35822 5.52678 5.69845 5.99766 6.19762 6.45315 6.80360 6.88191 7.31753 8.82594 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.036126 B = 0.010406 C = 0.009664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.880017 B = 2690.220978 C = 2896.644726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.080 4.080 3 H 0.084 0.916 4 C -0.103 4.103 5 C 0.114 3.886 6 H 0.071 0.929 7 O -0.580 6.580 8 C 0.039 3.961 9 N -0.537 5.537 10 C 0.199 3.801 11 C -0.558 4.558 12 H 0.051 0.949 13 C 0.013 3.987 14 N -0.924 5.924 15 Si 0.957 3.043 16 H -0.271 1.271 17 H -0.275 1.275 18 H -0.276 1.276 19 C 0.066 3.934 20 H 0.077 0.923 21 H 0.062 0.938 22 H 0.047 0.953 23 H 0.050 0.950 24 H 0.086 0.914 25 H 0.393 0.607 26 H 0.059 0.941 27 H 0.017 0.983 28 H 0.007 0.993 29 H 0.009 0.991 30 H 0.266 0.734 31 H 0.014 0.986 32 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.320 4.593 10.233 12.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.099 4.099 3 H 0.102 0.898 4 C -0.140 4.140 5 C 0.055 3.945 6 H 0.089 0.911 7 O -0.387 6.387 8 C -0.090 4.090 9 N -0.261 5.261 10 C 0.072 3.928 11 C -0.597 4.597 12 H 0.070 0.930 13 C -0.187 4.187 14 N -0.563 5.563 15 Si 0.782 3.218 16 H -0.195 1.195 17 H -0.200 1.200 18 H -0.201 1.201 19 C -0.063 4.063 20 H 0.096 0.904 21 H 0.081 0.919 22 H 0.066 0.934 23 H 0.068 0.932 24 H 0.105 0.895 25 H 0.242 0.758 26 H 0.078 0.922 27 H 0.035 0.965 28 H 0.025 0.975 29 H 0.027 0.973 30 H 0.075 0.925 31 H 0.032 0.968 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.687 4.998 10.248 12.741 hybrid contribution 0.519 -1.940 -0.914 2.206 sum -5.168 3.058 9.334 11.099 Atomic orbital electron populations 1.21724 0.92967 1.01920 1.02909 1.21121 0.96666 0.99718 0.92373 0.89754 1.21570 0.92910 1.00788 0.98743 1.21772 0.95366 0.94213 0.83177 0.91130 1.86423 1.28403 1.78434 1.45402 1.22555 0.99320 0.95608 0.91506 1.62343 1.08187 1.52662 1.02942 1.19432 0.94338 0.92026 0.86964 1.21975 1.29877 0.97688 1.10185 0.93037 1.25803 0.94740 1.02917 0.95218 1.70061 1.33978 1.38080 1.14220 0.85528 0.78280 0.79864 0.78155 1.19532 1.20045 1.20127 1.22043 0.87804 0.98025 0.98396 0.90434 0.91862 0.93355 0.93153 0.89513 0.75801 0.92229 0.96494 0.97522 0.97308 0.92480 0.96795 0.92112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 9.20 71.98 0.66 -2.56 16 2 C -0.08 -2.33 2.88 -10.74 -0.03 -2.36 16 3 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 4 C -0.10 -3.01 4.94 30.68 0.15 -2.86 16 5 C 0.11 3.58 3.63 30.65 0.11 3.70 16 6 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 7 O -0.58 -16.92 13.32 -148.98 -1.98 -18.91 16 8 C 0.04 1.57 4.66 86.33 0.40 1.97 16 9 N -0.54 -23.54 4.86 -900.92 -4.38 -27.92 16 10 C 0.20 10.68 5.12 85.56 0.44 11.12 16 11 C -0.56 -31.63 7.72 25.60 0.20 -31.43 16 12 H 0.05 2.93 5.86 -2.91 -0.02 2.91 16 13 C 0.01 0.73 5.46 84.66 0.46 1.20 16 14 N -0.92 -55.26 13.29 21.45 0.28 -54.98 16 15 Si 0.96 44.54 29.54 68.60 2.03 46.57 16 16 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 17 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 18 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 19 C 0.07 2.57 4.40 86.33 0.38 2.95 16 20 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 21 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 22 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 25 H 0.39 8.31 9.08 -74.05 -0.67 7.63 16 26 H 0.06 2.39 8.12 -2.39 -0.02 2.37 16 27 H 0.02 0.77 6.73 -2.39 -0.02 0.75 16 28 H 0.01 0.38 8.08 -2.38 -0.02 0.36 16 29 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 31 H 0.01 0.60 6.86 -2.39 -0.02 0.59 16 32 H 0.06 2.40 8.08 -2.39 -0.02 2.38 16 Total: -1.00 -64.11 256.60 -0.86 -64.98 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: 0.41 Total: 8.54 kcal Atomic # 6 Polarization: -21.06 SS G_CDS: 2.77 Total: -18.29 kcal Atomic # 7 Polarization: -78.80 SS G_CDS: -4.09 Total: -82.89 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: -1.98 Total: -18.91 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -64.11 -0.86 -64.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307691252.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.975 kcal (2) G-P(sol) polarization free energy of solvation -64.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds