Wall clock time and date at job start Mon Mar 30 2020 01:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.47199 * 2 1 4 4 N 1.46501 * 109.47380 * 119.99802 * 2 1 3 5 5 C 1.36938 * 120.00418 * 117.16897 * 4 2 1 6 6 H 1.07991 * 120.00067 * 146.06905 * 5 4 2 7 7 C 1.38813 * 119.99314 * 326.07847 * 5 4 2 8 8 N 1.31621 * 120.00527 * 345.27151 * 7 5 4 9 9 Si 1.86807 * 119.99455 * 165.27961 * 7 5 4 10 10 H 1.48492 * 109.47465 * 59.99663 * 9 7 5 11 11 H 1.48503 * 109.46820 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46923 * 299.99312 * 9 7 5 13 13 C 1.46507 * 120.00040 * 297.17309 * 4 2 1 14 14 H 1.08999 * 115.54706 * 25.57603 * 13 4 2 15 15 C 1.52999 * 117.49867 * 171.25007 * 13 4 2 16 16 C 1.52999 * 117.49637 * 239.91320 * 13 4 2 17 17 H 1.08998 * 117.50180 * 359.97059 * 16 13 4 18 18 C 1.52994 * 117.49750 * 144.97425 * 16 13 4 19 19 O 1.42900 * 109.47455 * 184.99268 * 18 16 13 20 20 H 1.09007 * 109.47027 * 300.00313 * 1 2 3 21 21 H 1.08995 * 109.46817 * 60.00035 * 1 2 3 22 22 H 1.08996 * 109.47360 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47464 * 239.99982 * 2 1 3 24 24 H 1.09001 * 109.47159 * 179.97438 * 3 2 1 25 25 H 1.09003 * 109.46952 * 299.99554 * 3 2 1 26 26 H 1.08991 * 109.47097 * 60.00060 * 3 2 1 27 27 H 0.96994 * 119.99946 * 180.02562 * 8 7 5 28 28 H 1.08994 * 117.49357 * 215.00152 * 15 13 4 29 29 H 1.09000 * 117.49884 * 0.02562 * 15 13 4 30 30 H 1.08996 * 109.47443 * 304.99569 * 18 16 13 31 31 H 1.09002 * 109.47579 * 64.99664 * 18 16 13 32 32 H 0.96696 * 114.00672 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.7572 -1.8368 1.0715 6 1 3.5433 -2.0522 1.7798 7 6 2.4955 -2.7216 0.0344 8 7 1.3751 -2.6220 -0.6490 9 14 3.7338 -4.0540 -0.3912 10 1 3.9395 -4.9334 0.7875 11 1 3.2212 -4.8614 -1.5272 12 1 5.0248 -3.4266 -0.7720 13 6 1.7163 -0.1549 2.5259 14 1 0.8162 0.4562 2.5932 15 6 2.0735 -1.0221 3.7347 16 6 2.8985 0.2280 3.4185 17 1 3.9009 0.0810 3.0166 18 6 2.7269 1.4396 4.3369 19 8 3.9621 1.7122 5.0016 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 1.8933 -0.5138 -0.8899 24 1 3.1300 1.4426 0.0005 25 1 1.6767 1.9564 -0.8901 26 1 1.6767 1.9563 0.8899 27 1 1.1922 -3.2405 -1.3734 28 1 1.4084 -0.9815 4.5973 29 1 2.5336 -1.9910 3.5407 30 1 2.4342 2.3062 3.7443 31 1 1.9551 1.2281 5.0770 32 1 3.9272 2.4699 5.6015 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307958987.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:21 Heat of formation + Delta-G solvation = -11.572432 kcal Electronic energy + Delta-G solvation = -13392.560022 eV Core-core repulsion = 11161.564235 eV Total energy + Delta-G solvation = -2230.995787 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -37.88904 -36.17502 -34.18932 -31.86361 -29.12898 -26.08702 -25.90028 -24.06518 -21.00144 -19.93963 -19.13174 -17.09608 -16.03421 -15.29541 -14.47696 -14.32270 -13.83488 -13.28692 -12.61009 -12.50955 -12.13463 -11.81982 -11.28885 -11.10468 -10.86106 -10.76869 -10.54740 -10.39903 -10.16297 -10.03382 -9.82967 -9.45652 -9.20788 -8.99413 -8.37794 -6.50698 -5.81414 -3.30934 3.38070 3.43097 3.45628 4.38753 4.58580 4.83959 5.31469 5.38523 5.60254 5.83911 5.87139 6.01578 6.19340 6.22186 6.34786 6.45633 6.54319 6.58330 6.69530 6.80000 6.87634 7.10417 7.11854 7.16846 7.64763 7.73736 7.87735 7.93323 8.50289 9.23110 9.83438 10.38169 11.24479 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.031579 B = 0.012418 C = 0.010092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.451990 B = 2254.231709 C = 2773.725082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.185 3.815 3 C -0.162 4.162 4 N -0.548 5.548 5 C -0.260 4.260 6 H 0.064 0.936 7 C 0.013 3.987 8 N -0.893 5.893 9 Si 0.902 3.098 10 H -0.282 1.282 11 H -0.290 1.290 12 H -0.283 1.283 13 C 0.147 3.853 14 H 0.087 0.913 15 C -0.188 4.188 16 C -0.205 4.205 17 H 0.102 0.898 18 C 0.114 3.886 19 O -0.574 6.574 20 H 0.022 0.978 21 H 0.028 0.972 22 H 0.076 0.924 23 H 0.093 0.907 24 H 0.045 0.955 25 H 0.039 0.961 26 H 0.038 0.962 27 H 0.255 0.745 28 H 0.075 0.925 29 H 0.100 0.900 30 H 0.040 0.960 31 H 0.037 0.963 32 H 0.368 0.632 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.455 6.970 5.098 8.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.079 3.921 3 C -0.220 4.220 4 N -0.264 5.264 5 C -0.390 4.390 6 H 0.082 0.918 7 C -0.187 4.187 8 N -0.535 5.535 9 Si 0.732 3.268 10 H -0.208 1.208 11 H -0.216 1.216 12 H -0.209 1.209 13 C 0.036 3.964 14 H 0.105 0.895 15 C -0.227 4.227 16 C -0.227 4.227 17 H 0.120 0.880 18 C 0.037 3.963 19 O -0.378 6.378 20 H 0.041 0.959 21 H 0.047 0.953 22 H 0.095 0.905 23 H 0.111 0.889 24 H 0.064 0.936 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.094 0.906 29 H 0.118 0.882 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -0.353 6.309 4.517 7.767 hybrid contribution 0.413 -0.249 0.173 0.513 sum 0.061 6.060 4.690 7.663 Atomic orbital electron populations 1.22126 0.98544 1.02455 0.97371 1.20244 0.91796 0.88760 0.91282 1.22378 1.00773 0.99610 0.99288 1.43544 1.59756 1.25366 0.97707 1.19001 1.10200 0.96926 1.12872 0.91820 1.25165 0.96052 0.97206 1.00295 1.69991 1.22050 1.38318 1.23170 0.86382 0.81080 0.81563 0.77781 1.20788 1.21599 1.20917 1.20970 0.92980 0.98143 0.84282 0.89548 1.23299 1.03518 0.96141 0.99721 1.22933 1.00416 0.94696 1.04657 0.88000 1.21719 0.84694 0.96647 0.93254 1.86558 1.35469 1.53321 1.62498 0.95855 0.95295 0.90460 0.88948 0.93556 0.94244 0.94299 0.93527 0.90649 0.88205 0.94169 0.94487 0.78664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.18 9.05 37.16 0.34 -2.85 16 2 C 0.19 4.31 2.37 -67.93 -0.16 4.15 16 3 C -0.16 -3.21 9.15 37.16 0.34 -2.87 16 4 N -0.55 -13.52 2.70 -158.14 -0.43 -13.95 16 5 C -0.26 -7.04 8.38 -15.06 -0.13 -7.17 16 6 H 0.06 1.74 6.94 -52.49 -0.36 1.38 16 7 C 0.01 0.34 4.90 -17.43 -0.09 0.26 16 8 N -0.89 -24.90 10.23 55.49 0.57 -24.33 16 9 Si 0.90 21.62 29.58 -169.99 -5.03 16.59 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 C 0.15 3.15 5.10 -67.93 -0.35 2.81 16 14 H 0.09 1.73 7.05 -51.93 -0.37 1.37 16 15 C -0.19 -3.83 9.42 -26.69 -0.25 -4.08 16 16 C -0.20 -4.07 5.78 -90.58 -0.52 -4.60 16 17 H 0.10 2.31 8.14 -51.93 -0.42 1.89 16 18 C 0.11 1.84 7.33 37.15 0.27 2.11 16 19 O -0.57 -9.03 13.66 -35.23 -0.48 -9.51 16 20 H 0.02 0.46 7.01 -51.93 -0.36 0.10 16 21 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.08 1.91 7.08 -51.93 -0.37 1.54 16 23 H 0.09 2.44 6.15 -51.93 -0.32 2.12 16 24 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.04 0.72 7.60 -51.93 -0.39 0.33 16 27 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 28 H 0.08 1.34 8.04 -51.93 -0.42 0.93 16 29 H 0.10 2.24 6.66 -51.93 -0.35 1.89 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.04 0.53 7.88 -51.93 -0.41 0.12 16 32 H 0.37 3.66 9.12 45.56 0.42 4.08 16 LS Contribution 261.54 15.07 3.94 3.94 Total: -1.00 -29.16 261.54 -6.16 -35.32 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -4.18 Total: 4.17 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: -0.55 Total: -12.23 kcal Atomic # 7 Polarization: -38.42 SS G_CDS: 0.14 Total: -38.28 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: -0.48 Total: -9.51 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -29.16 -6.16 -35.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307958987.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.746 kcal (2) G-P(sol) polarization free energy of solvation -29.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds