Wall clock time and date at job start Mon Mar 30 2020 01:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.47199 * 2 1 4 4 N 1.46501 * 109.47380 * 119.99802 * 2 1 3 5 5 C 1.36938 * 120.00418 * 117.16897 * 4 2 1 6 6 H 1.07991 * 120.00067 * 146.06905 * 5 4 2 7 7 C 1.38813 * 119.99314 * 326.07847 * 5 4 2 8 8 N 1.31621 * 120.00527 * 345.27151 * 7 5 4 9 9 Si 1.86807 * 119.99455 * 165.27961 * 7 5 4 10 10 H 1.48492 * 109.47465 * 59.99663 * 9 7 5 11 11 H 1.48503 * 109.46820 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46923 * 299.99312 * 9 7 5 13 13 C 1.46507 * 120.00040 * 297.17309 * 4 2 1 14 14 H 1.08999 * 115.54706 * 25.57603 * 13 4 2 15 15 C 1.52999 * 117.49867 * 171.25007 * 13 4 2 16 16 C 1.52999 * 117.49637 * 239.91320 * 13 4 2 17 17 H 1.08998 * 117.50180 * 359.97059 * 16 13 4 18 18 C 1.52994 * 117.49750 * 144.97425 * 16 13 4 19 19 O 1.42900 * 109.47455 * 184.99268 * 18 16 13 20 20 H 1.09007 * 109.47027 * 300.00313 * 1 2 3 21 21 H 1.08995 * 109.46817 * 60.00035 * 1 2 3 22 22 H 1.08996 * 109.47360 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47464 * 239.99982 * 2 1 3 24 24 H 1.09001 * 109.47159 * 179.97438 * 3 2 1 25 25 H 1.09003 * 109.46952 * 299.99554 * 3 2 1 26 26 H 1.08991 * 109.47097 * 60.00060 * 3 2 1 27 27 H 0.96994 * 119.99946 * 180.02562 * 8 7 5 28 28 H 1.08994 * 117.49357 * 215.00152 * 15 13 4 29 29 H 1.09000 * 117.49884 * 0.02562 * 15 13 4 30 30 H 1.08996 * 109.47443 * 304.99569 * 18 16 13 31 31 H 1.09002 * 109.47579 * 64.99664 * 18 16 13 32 32 H 0.96696 * 114.00672 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.7572 -1.8368 1.0715 6 1 3.5433 -2.0522 1.7798 7 6 2.4955 -2.7216 0.0344 8 7 1.3751 -2.6220 -0.6490 9 14 3.7338 -4.0540 -0.3912 10 1 3.9395 -4.9334 0.7875 11 1 3.2212 -4.8614 -1.5272 12 1 5.0248 -3.4266 -0.7720 13 6 1.7163 -0.1549 2.5259 14 1 0.8162 0.4562 2.5932 15 6 2.0735 -1.0221 3.7347 16 6 2.8985 0.2280 3.4185 17 1 3.9009 0.0810 3.0166 18 6 2.7269 1.4396 4.3369 19 8 3.9621 1.7122 5.0016 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 1.8933 -0.5138 -0.8899 24 1 3.1300 1.4426 0.0005 25 1 1.6767 1.9564 -0.8901 26 1 1.6767 1.9563 0.8899 27 1 1.1922 -3.2405 -1.3734 28 1 1.4084 -0.9815 4.5973 29 1 2.5336 -1.9910 3.5407 30 1 2.4342 2.3062 3.7443 31 1 1.9551 1.2281 5.0770 32 1 3.9272 2.4699 5.6015 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307958987.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:21 Heat of formation + Delta-G solvation = -31.369826 kcal Electronic energy + Delta-G solvation = -13393.418501 eV Core-core repulsion = 11161.564235 eV Total energy + Delta-G solvation = -2231.854266 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.52032 -37.58155 -35.81160 -33.83224 -30.97258 -27.68944 -27.38000 -26.01938 -22.73035 -21.47503 -20.97374 -18.49065 -17.78163 -17.07432 -16.28640 -15.85715 -15.44759 -14.85752 -14.31882 -14.21942 -13.73299 -13.54529 -12.92554 -12.89459 -12.74313 -12.60006 -12.30309 -12.03098 -11.94872 -11.66912 -11.38837 -11.26245 -10.94443 -10.48097 -10.35520 -8.43546 -7.85024 -5.36992 1.44528 1.45988 1.52545 2.48002 3.08649 3.28816 3.39251 3.75581 4.17239 4.35354 4.48574 4.52392 4.54271 4.69982 4.79248 4.91117 4.91674 4.99690 5.00412 5.14448 5.18984 5.38959 5.43147 5.54738 5.65608 5.79178 6.03572 6.47292 7.02765 7.21532 7.91852 8.38731 9.16694 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.031579 B = 0.012418 C = 0.010092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.451990 B = 2254.231709 C = 2773.725082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.180 3.820 3 C -0.148 4.148 4 N -0.566 5.566 5 C -0.266 4.266 6 H 0.050 0.950 7 C -0.033 4.033 8 N -0.912 5.912 9 Si 0.957 3.043 10 H -0.280 1.280 11 H -0.289 1.289 12 H -0.283 1.283 13 C 0.132 3.868 14 H 0.108 0.892 15 C -0.189 4.189 16 C -0.192 4.192 17 H 0.066 0.934 18 C 0.121 3.879 19 O -0.595 6.595 20 H 0.041 0.959 21 H 0.048 0.952 22 H 0.042 0.958 23 H 0.054 0.946 24 H 0.032 0.968 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.250 0.750 28 H 0.106 0.894 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.836 8.483 6.179 10.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.074 3.926 3 C -0.207 4.207 4 N -0.284 5.284 5 C -0.397 4.397 6 H 0.068 0.932 7 C -0.230 4.230 8 N -0.556 5.556 9 Si 0.785 3.215 10 H -0.206 1.206 11 H -0.215 1.215 12 H -0.209 1.209 13 C 0.023 3.977 14 H 0.126 0.874 15 C -0.227 4.227 16 C -0.214 4.214 17 H 0.084 0.916 18 C 0.044 3.956 19 O -0.404 6.404 20 H 0.060 0.940 21 H 0.067 0.933 22 H 0.061 0.939 23 H 0.072 0.928 24 H 0.051 0.949 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.059 0.941 28 H 0.125 0.875 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -0.728 7.854 5.631 9.691 hybrid contribution 0.564 -0.675 -0.102 0.886 sum -0.164 7.179 5.528 9.062 Atomic orbital electron populations 1.21946 0.97381 1.00733 0.99188 1.20235 0.92707 0.90133 0.89516 1.22194 0.99836 0.97450 1.01198 1.43702 1.60076 1.25151 0.99442 1.19080 1.10177 0.97844 1.12580 0.93185 1.25759 0.97540 0.99129 1.00618 1.70123 1.23119 1.38900 1.23409 0.85527 0.79155 0.79443 0.77345 1.20596 1.21523 1.20943 1.21173 0.94423 0.99050 0.83089 0.87438 1.23309 1.04017 0.95012 1.00380 1.22814 0.97832 0.96235 1.04518 0.91561 1.21609 0.85381 0.95162 0.93454 1.86480 1.35431 1.55129 1.63343 0.93983 0.93340 0.93931 0.92786 0.94855 0.91917 0.92672 0.94051 0.87547 0.91189 0.92474 0.91993 0.75542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.67 9.05 71.98 0.65 -5.02 16 2 C 0.18 8.32 2.37 44.99 0.11 8.42 16 3 C -0.15 -5.60 9.15 71.98 0.66 -4.94 16 4 N -0.57 -28.05 2.70 -654.24 -1.77 -29.81 16 5 C -0.27 -14.73 8.38 84.03 0.70 -14.02 16 6 H 0.05 2.84 6.94 -2.92 -0.02 2.82 16 7 C -0.03 -1.83 4.90 84.86 0.42 -1.42 16 8 N -0.91 -52.01 10.23 21.65 0.22 -51.79 16 9 Si 0.96 45.39 29.58 68.60 2.03 47.42 16 10 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 11 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 12 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 13 C 0.13 5.48 5.10 44.99 0.23 5.71 16 14 H 0.11 3.99 7.05 -2.39 -0.02 3.97 16 15 C -0.19 -7.47 9.42 30.62 0.29 -7.19 16 16 C -0.19 -7.36 5.78 -10.77 -0.06 -7.43 16 17 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 18 C 0.12 3.47 7.33 71.98 0.53 4.00 16 19 O -0.60 -16.91 13.66 -148.98 -2.03 -18.95 16 20 H 0.04 1.58 7.01 -2.38 -0.02 1.56 16 21 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 22 H 0.04 2.09 7.08 -2.39 -0.02 2.07 16 23 H 0.05 2.91 6.15 -2.39 -0.01 2.89 16 24 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.05 1.89 7.60 -2.39 -0.02 1.87 16 27 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 28 H 0.11 3.50 8.04 -2.39 -0.02 3.48 16 29 H 0.07 3.19 6.66 -2.39 -0.02 3.17 16 30 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.06 1.49 7.88 -2.39 -0.02 1.48 16 32 H 0.39 6.41 9.12 -74.06 -0.68 5.73 16 Total: -1.00 -63.45 261.54 2.39 -61.06 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: 0.42 Total: 13.95 kcal Atomic # 6 Polarization: -25.40 SS G_CDS: 3.52 Total: -21.88 kcal Atomic # 7 Polarization: -80.06 SS G_CDS: -1.54 Total: -81.61 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: -2.03 Total: -18.95 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -63.45 2.39 -61.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307958987.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.691 kcal (2) G-P(sol) polarization free energy of solvation -63.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds