Wall clock time and date at job start Mon Mar 30 2020 01:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46700 * 2 1 4 4 N 1.46501 * 109.46982 * 119.99494 * 2 1 3 5 5 C 1.36941 * 119.99424 * 123.53085 * 4 2 1 6 6 H 1.07997 * 120.00222 * 309.17190 * 5 4 2 7 7 C 1.38816 * 119.99588 * 129.17754 * 5 4 2 8 8 N 1.31620 * 119.99519 * 162.97098 * 7 5 4 9 9 Si 1.86800 * 120.00362 * 342.97473 * 7 5 4 10 10 H 1.48497 * 109.46642 * 264.78387 * 9 7 5 11 11 H 1.48498 * 109.47062 * 24.77815 * 9 7 5 12 12 H 1.48494 * 109.47254 * 144.78242 * 9 7 5 13 13 C 1.46498 * 120.00363 * 303.52924 * 4 2 1 14 14 H 1.08999 * 115.55086 * 328.23094 * 13 4 2 15 15 C 1.52996 * 117.49996 * 182.51954 * 13 4 2 16 16 C 1.53002 * 117.49542 * 113.89681 * 13 4 2 17 17 H 1.09001 * 117.50110 * 0.02562 * 16 13 4 18 18 C 1.52997 * 117.49997 * 214.97900 * 16 13 4 19 19 O 1.42895 * 109.47562 * 175.00338 * 18 16 13 20 20 H 1.08997 * 109.46981 * 300.00031 * 1 2 3 21 21 H 1.08999 * 109.47162 * 59.99947 * 1 2 3 22 22 H 1.08999 * 109.46849 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47456 * 240.00191 * 2 1 3 24 24 H 1.09003 * 109.46705 * 180.02562 * 3 2 1 25 25 H 1.09002 * 109.47174 * 299.99432 * 3 2 1 26 26 H 1.08997 * 109.47429 * 60.00243 * 3 2 1 27 27 H 0.97004 * 120.00106 * 180.02562 * 8 7 5 28 28 H 1.09009 * 117.49939 * 0.02562 * 15 13 4 29 29 H 1.09001 * 117.49828 * 145.02317 * 15 13 4 30 30 H 1.09000 * 109.47504 * 295.00696 * 18 16 13 31 31 H 1.09001 * 109.46739 * 54.99933 * 18 16 13 32 32 H 0.96693 * 114.00630 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.8642 -1.7603 1.0719 6 1 2.6112 -2.5746 0.4091 7 6 4.0468 -1.7980 1.7978 8 7 4.6903 -2.9362 1.9487 9 14 4.7249 -0.2334 2.5606 10 1 5.7261 0.3700 1.6449 11 1 3.6162 0.7287 2.7851 12 1 5.3713 -0.5552 3.8582 13 6 1.6018 -0.2366 2.5254 14 1 1.4160 0.8332 2.6200 15 6 2.1922 -0.9614 3.7366 16 6 0.7276 -1.1814 3.3526 17 1 0.4628 -2.1407 2.9081 18 6 -0.3400 -0.5520 4.2498 19 8 -1.1268 -1.5832 4.8494 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 3.1300 1.4425 -0.0005 25 1 1.6766 1.9563 -0.8900 26 1 1.6766 1.9564 0.8900 27 1 5.5165 -2.9627 2.4562 28 1 2.8910 -1.7757 3.5445 29 1 2.3952 -0.3683 4.6283 30 1 0.1421 0.0372 5.0299 31 1 -0.9826 0.0939 3.6515 32 1 -1.8249 -1.2563 5.4331 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307958988.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:22 Heat of formation + Delta-G solvation = -3.530669 kcal Electronic energy + Delta-G solvation = -13605.931274 eV Core-core repulsion = 11375.284204 eV Total energy + Delta-G solvation = -2230.647070 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.15798 -36.24031 -34.22665 -32.29825 -29.56528 -26.47928 -26.08244 -23.92698 -21.37400 -20.17438 -18.73638 -17.40681 -16.40999 -15.32837 -14.71205 -14.36616 -13.67288 -13.40535 -12.97832 -12.82823 -12.29143 -12.14015 -11.64103 -11.56124 -11.07210 -10.83193 -10.61797 -10.45637 -10.22932 -10.01751 -9.86743 -9.67616 -9.26166 -8.82885 -8.33150 -6.50966 -6.01039 -3.61255 3.39204 3.48741 3.56528 4.45430 4.52597 4.81007 5.03362 5.29588 5.57700 5.71921 5.76373 5.87317 5.95043 6.05681 6.10740 6.19412 6.22132 6.36563 6.41608 6.46675 6.59562 6.63732 6.99192 7.04146 7.12406 7.30369 7.95674 8.10789 8.51305 9.04740 9.67476 10.16674 11.10635 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.025559 B = 0.017277 C = 0.012771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.221267 B = 1620.280778 C = 2192.021568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.165 3.835 3 C -0.164 4.164 4 N -0.568 5.568 5 C -0.283 4.283 6 H 0.072 0.928 7 C 0.052 3.948 8 N -0.898 5.898 9 Si 0.881 3.119 10 H -0.297 1.297 11 H -0.250 1.250 12 H -0.297 1.297 13 C 0.142 3.858 14 H 0.087 0.913 15 C -0.204 4.204 16 C -0.187 4.187 17 H 0.107 0.893 18 C 0.112 3.888 19 O -0.572 6.572 20 H 0.046 0.954 21 H 0.043 0.957 22 H 0.052 0.948 23 H 0.073 0.927 24 H 0.051 0.949 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.264 0.736 28 H 0.124 0.876 29 H 0.074 0.926 30 H 0.036 0.964 31 H 0.040 0.960 32 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.066 8.259 1.888 11.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.059 3.941 3 C -0.223 4.223 4 N -0.287 5.287 5 C -0.412 4.412 6 H 0.089 0.911 7 C -0.150 4.150 8 N -0.538 5.538 9 Si 0.710 3.290 10 H -0.225 1.225 11 H -0.174 1.174 12 H -0.224 1.224 13 C 0.034 3.966 14 H 0.104 0.896 15 C -0.242 4.242 16 C -0.209 4.209 17 H 0.125 0.875 18 C 0.034 3.966 19 O -0.376 6.376 20 H 0.065 0.935 21 H 0.062 0.938 22 H 0.071 0.929 23 H 0.091 0.909 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.142 0.858 29 H 0.093 0.907 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -7.482 7.775 1.548 10.901 hybrid contribution 0.203 1.084 0.975 1.472 sum -7.278 8.859 2.523 11.740 Atomic orbital electron populations 1.22213 0.98052 1.01253 0.99953 1.20571 0.91678 0.91187 0.90712 1.22314 1.01374 0.98688 0.99911 1.43678 1.52467 1.34468 0.98066 1.18622 0.97665 0.96903 1.28017 0.91055 1.25816 0.95597 0.96314 0.97224 1.69886 1.17921 1.24806 1.41161 0.86900 0.78840 0.85767 0.77527 1.22461 1.17381 1.22444 1.21176 0.98187 0.92681 0.84595 0.89563 1.23733 0.97117 1.05144 0.98174 1.22943 0.90084 1.04185 1.03674 0.87469 1.21781 0.91881 0.88822 0.94118 1.86580 1.49368 1.35831 1.65806 0.93512 0.93830 0.92884 0.90925 0.92971 0.93715 0.93722 0.92602 0.85801 0.90743 0.94558 0.94211 0.78723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.64 9.14 37.16 0.34 -2.30 16 2 C 0.16 3.26 3.33 -67.93 -0.23 3.03 16 3 C -0.16 -2.88 9.24 37.16 0.34 -2.54 16 4 N -0.57 -13.30 2.04 -158.14 -0.32 -13.62 16 5 C -0.28 -7.85 9.24 -15.06 -0.14 -7.99 16 6 H 0.07 2.18 8.06 -52.49 -0.42 1.76 16 7 C 0.05 1.49 3.65 -17.43 -0.06 1.42 16 8 N -0.90 -27.15 13.97 55.49 0.78 -26.38 16 9 Si 0.88 22.14 24.81 -169.99 -4.22 17.92 16 10 H -0.30 -7.62 7.11 56.52 0.40 -7.21 16 11 H -0.25 -5.86 5.11 56.52 0.29 -5.57 16 12 H -0.30 -7.55 7.11 56.52 0.40 -7.14 16 13 C 0.14 3.07 2.85 -67.93 -0.19 2.87 16 14 H 0.09 1.71 7.02 -51.93 -0.36 1.35 16 15 C -0.20 -4.59 6.27 -26.73 -0.17 -4.76 16 16 C -0.19 -3.90 5.89 -90.62 -0.53 -4.44 16 17 H 0.11 2.56 8.14 -51.93 -0.42 2.13 16 18 C 0.11 1.85 7.33 37.16 0.27 2.12 16 19 O -0.57 -9.33 13.66 -35.23 -0.48 -9.81 16 20 H 0.05 0.77 7.59 -51.93 -0.39 0.37 16 21 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 23 H 0.07 1.49 7.89 -51.93 -0.41 1.08 16 24 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 25 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.04 0.76 7.03 -51.93 -0.37 0.39 16 27 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 28 H 0.12 3.25 4.77 -51.92 -0.25 3.01 16 29 H 0.07 1.51 8.03 -51.93 -0.42 1.10 16 30 H 0.04 0.55 7.88 -51.93 -0.41 0.14 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.37 3.82 9.12 45.56 0.42 4.24 16 LS Contribution 255.30 15.07 3.85 3.85 Total: -1.00 -30.86 255.30 -5.17 -36.03 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -4.40 Total: 4.59 kcal Atomic # 6 Polarization: -12.21 SS G_CDS: -0.37 Total: -12.58 kcal Atomic # 7 Polarization: -40.45 SS G_CDS: 0.45 Total: -40.00 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: -0.48 Total: -9.81 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.22 Total: 17.92 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -30.86 -5.17 -36.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307958988.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.499 kcal (2) G-P(sol) polarization free energy of solvation -30.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds