Wall clock time and date at job start Mon Mar 30 2020 02:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.48077 * 2 1 4 4 C 1.53096 * 109.47982 * 239.98005 * 2 1 3 5 5 C 1.53182 * 109.16226 * 182.41607 * 4 2 1 6 6 C 1.53181 * 109.04168 * 56.96250 * 5 4 2 7 7 H 1.09004 * 109.57324 * 62.96285 * 6 5 4 8 8 N 1.46905 * 109.52057 * 183.11791 * 6 5 4 9 9 C 1.46902 * 110.99890 * 204.68935 * 8 6 5 10 10 C 1.50700 * 109.47073 * 180.02562 * 9 8 6 11 11 H 1.08005 * 119.99895 * 359.97438 * 10 9 8 12 12 C 1.37872 * 119.99978 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00163 * 359.97438 * 12 10 9 14 14 Si 1.86811 * 119.99979 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46979 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.46919 * 119.99924 * 14 12 10 17 17 H 1.48497 * 109.47116 * 239.99917 * 14 12 10 18 18 C 1.53091 * 109.16800 * 303.02291 * 6 5 4 19 19 O 1.42904 * 109.48358 * 120.02543 * 2 1 3 20 20 H 1.09002 * 109.47153 * 299.99734 * 1 2 3 21 21 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47261 * 59.99906 * 1 2 3 23 23 H 1.08999 * 109.52367 * 302.30970 * 4 2 1 24 24 H 1.09004 * 109.52425 * 62.50231 * 4 2 1 25 25 H 1.08990 * 109.54001 * 297.09873 * 5 4 2 26 26 H 1.08998 * 109.61519 * 176.87489 * 5 4 2 27 27 H 1.00894 * 111.00066 * 80.73641 * 8 6 5 28 28 H 1.09007 * 109.46996 * 299.99875 * 9 8 6 29 29 H 1.08997 * 109.47710 * 59.99621 * 9 8 6 30 30 H 0.97003 * 119.99873 * 180.02562 * 13 12 10 31 31 H 1.08997 * 109.48138 * 297.63009 * 18 6 5 32 32 H 1.08995 * 109.49157 * 177.59488 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0277 0.0000 4 6 2.0405 -0.7221 -1.2497 5 6 3.5711 -0.7709 -1.2122 6 6 4.0176 -1.4600 0.0809 7 1 3.6622 -2.4904 0.0871 8 7 5.4843 -1.4461 0.1634 9 6 5.9744 -2.5424 1.0095 10 6 7.4794 -2.4955 1.0707 11 1 8.0180 -1.7282 0.5342 12 6 8.1688 -3.4319 1.8114 13 7 7.5129 -4.3658 2.4651 14 14 10.0345 -3.3742 1.8866 15 1 10.5277 -2.2355 1.0709 16 1 10.4678 -3.1973 3.2959 17 1 10.5909 -4.6435 1.3532 18 6 3.4308 -0.7092 1.2791 19 8 2.0066 -0.6741 1.1664 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 -0.8900 23 1 1.6443 -1.7373 -1.2712 24 1 1.7148 -0.1840 -2.1400 25 1 3.9690 0.2434 -1.2409 26 1 3.9404 -1.3319 -2.0706 27 1 5.8193 -0.5546 0.4966 28 1 5.5668 -2.4355 2.0149 29 1 5.6570 -3.4963 0.5884 30 1 7.9980 -5.0244 2.9866 31 1 3.8193 0.3091 1.2957 32 1 3.7100 -1.2199 2.2006 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335655835.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:56 Heat of formation + Delta-G solvation = -86.260295 kcal Electronic energy + Delta-G solvation = -12954.216653 eV Core-core repulsion = 10719.982158 eV Total energy + Delta-G solvation = -2234.234496 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.59057 -37.14771 -34.85040 -34.15806 -32.10681 -28.96713 -27.21090 -25.17445 -23.73029 -22.61696 -21.29909 -18.64093 -17.54666 -16.88873 -16.68710 -15.96981 -15.58263 -15.22506 -15.08277 -14.30270 -13.83224 -13.63612 -13.46101 -13.12598 -13.06115 -12.73563 -12.66266 -12.18139 -12.13190 -11.99703 -11.69441 -11.40973 -11.18130 -10.75287 -10.50942 -9.09108 -8.24093 -6.36075 1.41140 1.41910 1.55994 2.39044 2.76165 3.09420 3.53593 3.79325 3.83939 3.93492 4.15695 4.20253 4.35874 4.55091 4.65752 4.75404 4.76481 4.85019 5.03359 5.05611 5.06858 5.23189 5.28089 5.33071 5.37895 5.60082 5.98244 6.21286 6.42602 6.68341 6.86418 7.35341 8.87817 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.084300 B = 0.006676 C = 0.006457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 332.066897 B = 4193.210754 C = 4335.592511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.072 3.928 3 H 0.066 0.934 4 C -0.142 4.142 5 C -0.103 4.103 6 C 0.053 3.947 7 H 0.052 0.948 8 N -0.676 5.676 9 C 0.208 3.792 10 C -0.536 4.536 11 H 0.067 0.933 12 C 0.000 4.000 13 N -0.935 5.935 14 Si 0.976 3.024 15 H -0.261 1.261 16 H -0.277 1.277 17 H -0.279 1.279 18 C 0.046 3.954 19 O -0.400 6.400 20 H 0.061 0.939 21 H 0.056 0.944 22 H 0.097 0.903 23 H 0.062 0.938 24 H 0.102 0.898 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.337 0.663 28 H -0.036 1.036 29 H -0.005 1.005 30 H 0.265 0.735 31 H 0.063 0.937 32 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.689 9.791 -6.012 15.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.015 3.985 3 H 0.084 0.916 4 C -0.180 4.180 5 C -0.141 4.141 6 C -0.058 4.058 7 H 0.070 0.930 8 N -0.307 5.307 9 C 0.080 3.920 10 C -0.575 4.575 11 H 0.085 0.915 12 C -0.198 4.198 13 N -0.576 5.576 14 Si 0.800 3.200 15 H -0.185 1.185 16 H -0.203 1.203 17 H -0.204 1.204 18 C -0.033 4.033 19 O -0.319 6.319 20 H 0.080 0.920 21 H 0.075 0.925 22 H 0.115 0.885 23 H 0.080 0.920 24 H 0.121 0.879 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.155 0.845 28 H -0.018 1.018 29 H 0.013 0.987 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.723 9.211 -6.359 15.500 hybrid contribution 0.899 -0.182 1.158 1.477 sum -9.824 9.029 -5.201 14.321 Atomic orbital electron populations 1.21779 0.91475 1.02905 1.03514 1.22429 0.96275 0.95224 0.84550 0.91571 1.22228 0.94738 1.01810 0.99193 1.21539 0.95533 1.00879 0.96121 1.22228 0.88416 0.99043 0.96101 0.93007 1.60664 1.07081 1.07139 1.55844 1.19243 0.94727 0.89331 0.88670 1.21583 0.92339 1.13994 1.29535 0.91512 1.25994 1.04424 0.94682 0.94706 1.70110 1.37865 1.17141 1.32454 0.85236 0.78374 0.78350 0.78024 1.18478 1.20261 1.20425 1.23201 0.81351 0.99906 0.98836 1.87886 1.20580 1.78728 1.44703 0.91973 0.92478 0.88482 0.91967 0.87941 0.90923 0.91477 0.84513 1.01805 0.98657 0.92580 0.91919 0.91351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.56 71.98 0.69 -1.86 16 2 C 0.07 1.72 3.26 30.63 0.10 1.82 16 3 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 4 C -0.14 -3.25 5.42 30.69 0.17 -3.09 16 5 C -0.10 -2.94 5.64 30.72 0.17 -2.76 16 6 C 0.05 1.96 2.67 45.01 0.12 2.08 16 7 H 0.05 2.18 7.80 -2.38 -0.02 2.16 16 8 N -0.68 -29.55 6.24 -495.08 -3.09 -32.64 16 9 C 0.21 11.40 5.24 85.56 0.45 11.85 16 10 C -0.54 -30.96 9.32 25.60 0.24 -30.72 16 11 H 0.07 3.72 7.81 -2.91 -0.02 3.70 16 12 C 0.00 0.00 5.46 84.65 0.46 0.47 16 13 N -0.94 -57.41 13.29 21.45 0.28 -57.12 16 14 Si 0.98 44.55 29.54 68.60 2.03 46.58 16 15 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 16 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 17 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 18 C 0.05 1.58 6.10 72.01 0.44 2.01 16 19 O -0.40 -12.96 10.41 -148.98 -1.55 -14.51 16 20 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 21 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 22 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 23 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 24 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.34 13.72 8.44 -89.70 -0.76 12.96 16 28 H -0.04 -2.09 7.49 -2.38 -0.02 -2.11 16 29 H 0.00 -0.28 8.06 -2.39 -0.02 -0.30 16 30 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 31 H 0.06 1.93 8.09 -2.39 -0.02 1.91 16 32 H 0.07 2.67 7.52 -2.39 -0.02 2.65 16 Total: -1.00 -65.36 262.13 0.83 -64.53 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: 0.32 Total: 13.37 kcal Atomic # 6 Polarization: -23.04 SS G_CDS: 2.84 Total: -20.20 kcal Atomic # 7 Polarization: -86.96 SS G_CDS: -2.81 Total: -89.77 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: -1.55 Total: -14.51 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -65.36 0.83 -64.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335655835.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.732 kcal (2) G-P(sol) polarization free energy of solvation -65.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds