Wall clock time and date at job start Mon Mar 30 2020 02:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.54715 * 2 1 4 4 C 1.53097 * 109.50530 * 239.89165 * 2 1 3 5 5 O 1.43014 * 109.29551 * 183.23844 * 4 2 1 6 6 C 1.43016 * 113.74236 * 58.64902 * 5 4 2 7 7 C 1.53099 * 109.25752 * 301.33424 * 6 5 4 8 8 H 1.09001 * 109.51019 * 176.78423 * 7 6 5 9 9 C 1.53002 * 109.50303 * 296.91160 * 7 6 5 10 10 N 1.47013 * 109.26055 * 56.84204 * 7 6 5 11 11 C 1.46899 * 111.00081 * 177.60923 * 10 7 6 12 12 C 1.50695 * 109.47231 * 295.17678 * 11 10 7 13 13 H 1.07999 * 120.00246 * 4.74296 * 12 11 10 14 14 C 1.37876 * 119.99857 * 184.74666 * 12 11 10 15 15 N 1.31520 * 119.99961 * 179.97438 * 14 12 11 16 16 Si 1.86799 * 120.00190 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.46880 * 90.00102 * 16 14 12 18 18 H 1.48503 * 109.47309 * 209.99865 * 16 14 12 19 19 H 1.48496 * 109.47080 * 330.00169 * 16 14 12 20 20 H 1.08999 * 109.47079 * 186.76641 * 1 2 3 21 21 H 1.09003 * 109.46714 * 306.76109 * 1 2 3 22 22 H 1.08998 * 109.46992 * 66.75580 * 1 2 3 23 23 H 1.08994 * 109.50637 * 63.28167 * 4 2 1 24 24 H 1.09000 * 109.50837 * 303.19424 * 4 2 1 25 25 H 1.09007 * 109.50628 * 61.26158 * 6 5 4 26 26 H 1.08994 * 109.51026 * 181.35290 * 6 5 4 27 27 H 1.08999 * 109.47499 * 59.99915 * 9 7 6 28 28 H 1.09006 * 109.47017 * 180.02562 * 9 7 6 29 29 H 1.09006 * 109.47289 * 299.99742 * 9 7 6 30 30 H 1.09002 * 109.46981 * 55.17699 * 11 10 7 31 31 H 1.09004 * 109.47374 * 175.17443 * 11 10 7 32 32 H 0.96999 * 120.00215 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8946 1.0271 0.0000 4 6 2.0411 -0.7239 -1.2484 5 8 3.4692 -0.7876 -1.2062 6 6 3.9819 -1.4588 -0.0521 7 6 3.4912 -0.7418 1.2085 8 1 3.8323 -1.2830 2.0911 9 6 4.0479 0.6831 1.2351 10 7 2.0219 -0.6947 1.1988 11 6 1.5073 -0.0634 2.4213 12 6 1.8565 -0.9174 3.6128 13 1 2.4708 -1.7965 3.4858 14 6 1.3915 -0.5764 4.8653 15 7 1.6958 -1.3220 5.9051 16 14 0.3295 0.9444 5.0853 17 1 -1.1006 0.5766 4.9270 18 1 0.5482 1.5091 6.4412 19 1 0.6964 1.9566 4.0625 20 1 -0.3633 -1.0205 0.1211 21 1 -0.3633 0.6151 0.8233 22 1 -0.3633 0.4056 -0.9442 23 1 1.7272 -0.1795 -2.1389 24 1 1.6325 -1.7340 -1.2764 25 1 3.6295 -2.4904 -0.0445 26 1 5.0714 -1.4466 -0.0778 27 1 3.7047 1.2238 0.3531 28 1 3.6986 1.1929 2.1330 29 1 5.1374 0.6476 1.2384 30 1 1.9561 0.9232 2.5374 31 1 0.4242 0.0363 2.3506 32 1 1.3691 -1.0820 6.7863 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335845195.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:24 Heat of formation + Delta-G solvation = -62.091088 kcal Electronic energy + Delta-G solvation = -13736.077704 eV Core-core repulsion = 11502.891264 eV Total energy + Delta-G solvation = -2233.186440 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.97368 -37.14746 -34.70649 -34.19332 -31.17095 -28.44840 -28.05798 -26.54490 -23.29142 -23.08294 -19.85444 -18.93705 -17.35542 -17.14800 -16.62695 -16.23976 -16.02901 -15.15644 -14.87014 -14.55733 -14.08575 -13.52564 -13.33939 -13.14305 -12.87122 -12.65641 -12.47780 -12.45038 -12.27067 -11.84729 -11.74503 -11.29515 -11.24883 -10.76518 -10.41037 -9.00232 -8.29236 -6.31354 1.31972 1.33126 1.43659 2.32346 2.93309 3.02504 3.15067 3.89222 4.03805 4.10762 4.19291 4.30257 4.48329 4.55317 4.66175 4.71012 4.78944 4.83378 4.88000 4.99970 5.03324 5.08306 5.19897 5.27207 5.38746 5.56623 5.98130 6.19479 6.35967 6.64301 6.73943 7.31550 8.87290 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.043952 B = 0.012006 C = 0.010631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.907523 B = 2331.682163 C = 2633.277034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.032 3.968 3 H 0.040 0.960 4 C 0.073 3.927 5 O -0.393 6.393 6 C 0.076 3.924 7 C 0.046 3.954 8 H 0.069 0.931 9 C -0.167 4.167 10 N -0.532 5.532 11 C 0.170 3.830 12 C -0.512 4.512 13 H 0.038 0.962 14 C 0.010 3.990 15 N -0.947 5.947 16 Si 0.942 3.058 17 H -0.264 1.264 18 H -0.282 1.282 19 H -0.254 1.254 20 H 0.058 0.942 21 H 0.044 0.956 22 H 0.090 0.910 23 H 0.122 0.878 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.115 0.885 27 H 0.060 0.940 28 H 0.037 0.963 29 H 0.072 0.928 30 H -0.013 1.013 31 H 0.034 0.966 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.089 4.405 -13.479 14.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.076 4.076 3 H 0.058 0.942 4 C -0.004 4.004 5 O -0.312 6.312 6 C -0.001 4.001 7 C -0.062 4.062 8 H 0.088 0.912 9 C -0.226 4.226 10 N -0.257 5.257 11 C 0.043 3.957 12 C -0.550 4.550 13 H 0.056 0.944 14 C -0.187 4.187 15 N -0.588 5.588 16 Si 0.766 3.234 17 H -0.189 1.189 18 H -0.208 1.208 19 H -0.178 1.178 20 H 0.077 0.923 21 H 0.064 0.936 22 H 0.109 0.891 23 H 0.139 0.861 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.133 0.867 27 H 0.079 0.921 28 H 0.056 0.944 29 H 0.091 0.909 30 H 0.005 0.995 31 H 0.051 0.949 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.001 3.976 -13.466 14.041 hybrid contribution -0.248 1.036 1.239 1.634 sum -0.249 5.012 -12.227 13.216 Atomic orbital electron populations 1.21784 0.93026 1.02429 1.02481 1.22457 0.97066 0.96341 0.91754 0.94239 1.22804 0.80284 1.00437 0.96873 1.87882 1.21500 1.78677 1.43127 1.22694 0.99575 0.94752 0.83056 1.22256 0.88214 0.96578 0.99200 0.91247 1.22194 1.01786 0.97733 1.00846 1.62363 1.07970 1.53244 1.02083 1.19981 0.95351 0.92512 0.87857 1.21246 1.31573 1.10571 0.91648 0.94369 1.25785 0.97605 0.99885 0.95464 1.70043 1.47804 1.40907 1.00077 0.85785 0.79707 0.80023 0.77882 1.18868 1.20775 1.17841 0.92314 0.93649 0.89147 0.86061 0.92488 0.92878 0.86732 0.92095 0.94378 0.90909 0.99497 0.94853 0.92484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.03 8.69 71.98 0.63 -3.41 16 2 C 0.03 1.06 2.19 44.92 0.10 1.16 16 3 H 0.04 1.33 6.39 -2.39 -0.02 1.31 16 4 C 0.07 1.99 6.29 72.01 0.45 2.44 16 5 O -0.39 -11.95 10.28 -148.98 -1.53 -13.48 16 6 C 0.08 2.37 6.41 72.02 0.46 2.83 16 7 C 0.05 1.79 2.78 44.93 0.12 1.91 16 8 H 0.07 3.11 6.63 -2.39 -0.02 3.10 16 9 C -0.17 -5.89 8.40 71.98 0.60 -5.29 16 10 N -0.53 -21.99 4.49 -849.44 -3.81 -25.81 16 11 C 0.17 8.16 3.32 85.56 0.28 8.44 16 12 C -0.51 -29.64 9.13 25.60 0.23 -29.41 16 13 H 0.04 2.46 7.09 -2.91 -0.02 2.44 16 14 C 0.01 0.57 5.47 84.65 0.46 1.04 16 15 N -0.95 -59.37 13.96 21.45 0.30 -59.07 16 16 Si 0.94 44.30 27.38 68.60 1.88 46.18 16 17 H -0.26 -11.85 7.11 99.48 0.71 -11.15 16 18 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 19 H -0.25 -11.28 6.68 99.48 0.66 -10.62 16 20 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 21 H 0.04 1.43 6.59 -2.39 -0.02 1.41 16 22 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 23 H 0.12 2.51 8.14 -2.39 -0.02 2.50 16 24 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 26 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 27 H 0.06 2.02 6.06 -2.39 -0.01 2.01 16 28 H 0.04 1.51 6.37 -2.38 -0.02 1.50 16 29 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 30 H -0.01 -0.61 5.53 -2.39 -0.01 -0.62 16 31 H 0.03 1.58 5.15 -2.39 -0.01 1.57 16 32 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -65.77 244.79 1.23 -64.54 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: 1.05 Total: 7.91 kcal Atomic # 6 Polarization: -23.62 SS G_CDS: 3.35 Total: -20.27 kcal Atomic # 7 Polarization: -81.37 SS G_CDS: -3.51 Total: -84.88 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: -1.53 Total: -13.48 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.88 Total: 46.18 kcal Total: -65.77 1.23 -64.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335845195.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.452 kcal (2) G-P(sol) polarization free energy of solvation -65.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds