Wall clock time and date at job start Mon Mar 30 2020 02:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42902 * 114.00401 * 2 1 4 4 H 1.08999 * 109.46923 * 22.57804 * 3 2 1 5 5 C 1.52993 * 109.47500 * 142.58066 * 3 2 1 6 6 H 1.09001 * 109.47313 * 184.99786 * 5 3 2 7 7 C 1.53000 * 109.47347 * 305.00478 * 5 3 2 8 8 N 1.46500 * 109.46962 * 65.00219 * 5 3 2 9 9 C 1.36940 * 120.00257 * 154.99841 * 8 5 3 10 10 H 1.08006 * 119.99398 * 0.02562 * 9 8 5 11 11 C 1.38810 * 120.00359 * 180.02562 * 9 8 5 12 12 N 1.31621 * 120.00018 * 359.97438 * 11 9 8 13 13 Si 1.86792 * 120.00161 * 180.02562 * 11 9 8 14 14 H 1.48507 * 109.47424 * 89.99957 * 13 11 9 15 15 H 1.48497 * 109.47274 * 209.99932 * 13 11 9 16 16 H 1.48498 * 109.47340 * 329.99953 * 13 11 9 17 17 C 1.52999 * 109.46873 * 262.58537 * 3 2 1 18 18 C 1.53001 * 117.49987 * 65.28706 * 17 3 2 19 19 C 1.52996 * 60.03260 * 107.47836 * 18 17 3 20 20 H 1.09004 * 109.47536 * 185.55681 * 1 2 3 21 21 H 1.09004 * 109.47547 * 305.56149 * 1 2 3 22 22 H 1.09001 * 109.47174 * 65.55626 * 1 2 3 23 23 H 1.09004 * 109.47234 * 180.02562 * 7 5 3 24 24 H 1.09002 * 109.46897 * 299.99705 * 7 5 3 25 25 H 1.09003 * 109.46967 * 59.99437 * 7 5 3 26 26 H 0.97005 * 120.00122 * 334.99863 * 8 5 3 27 27 H 0.97002 * 120.00168 * 180.02562 * 12 11 9 28 28 H 1.08999 * 115.56196 * 279.59527 * 17 3 2 29 29 H 1.09001 * 117.49334 * 214.97483 * 18 17 3 30 30 H 1.08996 * 117.50226 * 359.97145 * 18 17 3 31 31 H 1.09001 * 117.50535 * 107.50344 * 19 18 17 32 32 H 1.09006 * 117.49870 * 252.52116 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.2912 2.0233 0.3946 5 6 3.2642 1.3054 0.8765 6 1 3.6574 2.3195 0.9483 7 6 2.9092 0.7956 2.2747 8 7 4.2767 0.4303 0.2802 9 6 5.6036 0.6361 0.5490 10 1 5.9036 1.4432 1.2009 11 6 6.5629 -0.1927 -0.0164 12 7 6.1972 -1.1766 -0.8104 13 14 8.3728 0.0875 0.3508 14 1 8.7616 -0.6959 1.5511 15 1 9.1873 -0.3503 -0.8111 16 1 8.6087 1.5315 0.6046 17 6 2.3877 1.6955 -1.4304 18 6 1.2499 1.8744 -2.4376 19 6 1.9997 3.0977 -1.9064 20 1 -0.3634 -1.0228 0.0995 21 1 -0.3634 0.5977 0.8360 22 1 -0.3633 0.4252 -0.9356 23 1 3.8026 0.7960 2.8993 24 1 2.1559 1.4467 2.7183 25 1 2.5161 -0.2185 2.2027 26 1 4.0071 -0.2948 -0.3050 27 1 6.8676 -1.7560 -1.2052 28 1 3.3256 1.2803 -1.7992 29 1 1.4394 1.5768 -3.4689 30 1 0.2325 1.7137 -2.0813 31 1 2.6823 3.6050 -2.5881 32 1 1.4755 3.7417 -1.2001 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388275680.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:39 Heat of formation + Delta-G solvation = -31.638142 kcal Electronic energy + Delta-G solvation = -13325.654123 eV Core-core repulsion = 11093.788221 eV Total energy + Delta-G solvation = -2231.865902 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.09081 -36.86364 -36.61358 -33.83119 -30.46347 -28.47123 -26.59301 -25.55926 -23.26256 -22.13736 -20.95537 -19.35015 -17.49042 -17.06066 -16.34407 -16.05051 -15.63845 -15.14390 -14.77223 -14.19458 -13.85299 -13.48619 -13.11856 -12.78909 -12.66478 -12.44163 -12.29633 -12.21238 -12.13573 -11.77761 -11.60060 -11.12458 -10.95690 -10.87602 -10.20923 -8.92145 -7.87735 -5.14653 1.47053 1.49170 1.57234 2.58828 2.75865 3.23077 3.45347 3.76766 3.97873 4.02032 4.21292 4.31324 4.45936 4.53263 4.59536 4.66898 4.74948 4.80499 4.91735 4.99829 5.06909 5.10999 5.26785 5.27924 5.46386 5.54373 5.64643 6.32812 6.50987 7.39949 8.20034 8.43926 9.36075 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.038982 B = 0.010171 C = 0.009357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.113193 B = 2752.129328 C = 2991.590926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.399 6.399 3 C 0.127 3.873 4 H 0.085 0.915 5 C 0.166 3.834 6 H 0.055 0.945 7 C -0.152 4.152 8 N -0.726 5.726 9 C -0.232 4.232 10 H 0.075 0.925 11 C -0.080 4.080 12 N -0.971 5.971 13 Si 0.970 3.030 14 H -0.290 1.290 15 H -0.298 1.298 16 H -0.268 1.268 17 C -0.186 4.186 18 C -0.170 4.170 19 C -0.163 4.163 20 H 0.087 0.913 21 H 0.054 0.946 22 H 0.050 0.950 23 H 0.034 0.966 24 H 0.068 0.932 25 H 0.041 0.959 26 H 0.375 0.625 27 H 0.248 0.752 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.108 0.892 31 H 0.093 0.907 32 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.528 7.743 0.937 14.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.318 6.318 3 C 0.069 3.931 4 H 0.103 0.897 5 C 0.057 3.943 6 H 0.073 0.927 7 C -0.212 4.212 8 N -0.366 5.366 9 C -0.364 4.364 10 H 0.093 0.907 11 C -0.272 4.272 12 N -0.623 5.623 13 Si 0.800 3.200 14 H -0.217 1.217 15 H -0.225 1.225 16 H -0.193 1.193 17 C -0.205 4.205 18 C -0.207 4.207 19 C -0.199 4.199 20 H 0.106 0.894 21 H 0.072 0.928 22 H 0.069 0.931 23 H 0.054 0.946 24 H 0.087 0.913 25 H 0.060 0.940 26 H 0.207 0.793 27 H 0.057 0.943 28 H 0.094 0.906 29 H 0.108 0.892 30 H 0.126 0.874 31 H 0.112 0.888 32 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -12.273 7.682 1.010 14.514 hybrid contribution 1.057 -0.403 -0.201 1.149 sum -11.216 7.279 0.809 13.395 Atomic orbital electron populations 1.23055 0.80380 1.03278 1.00705 1.87997 1.20703 1.28226 1.94880 1.21900 0.94279 0.84576 0.92341 0.89726 1.20659 0.87993 0.93859 0.91786 0.92699 1.22210 1.00102 1.01020 0.97832 1.42517 1.01662 1.35896 1.56563 1.19664 0.84458 1.10414 1.21892 0.90718 1.25517 1.01970 0.98667 1.01059 1.69859 1.33265 1.21493 1.37675 0.85181 0.80567 0.77846 0.76455 1.21746 1.22482 1.19322 1.22648 0.99851 1.01591 0.96382 1.22980 0.96822 1.02250 0.98625 1.23026 1.03194 0.90094 1.03631 0.89448 0.92778 0.93130 0.94644 0.91268 0.93971 0.79334 0.94343 0.90595 0.89150 0.87363 0.88841 0.86944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.54 10.74 113.37 1.22 1.75 16 2 O -0.40 -14.30 9.17 -148.98 -1.37 -15.67 16 3 C 0.13 4.33 2.13 30.59 0.07 4.40 16 4 H 0.08 2.30 7.43 -2.39 -0.02 2.28 16 5 C 0.17 6.79 2.80 44.99 0.13 6.92 16 6 H 0.06 2.23 8.08 -2.39 -0.02 2.21 16 7 C -0.15 -5.68 9.29 71.98 0.67 -5.01 16 8 N -0.73 -38.28 4.17 -322.94 -1.35 -39.62 16 9 C -0.23 -13.28 9.93 84.03 0.83 -12.45 16 10 H 0.07 4.08 7.83 -2.91 -0.02 4.06 16 11 C -0.08 -4.78 5.50 84.86 0.47 -4.31 16 12 N -0.97 -61.99 13.06 21.65 0.28 -61.71 16 13 Si 0.97 47.63 29.55 68.60 2.03 49.66 16 14 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 15 H -0.30 -14.76 7.11 99.48 0.71 -14.05 16 16 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 17 C -0.19 -6.50 5.15 -10.77 -0.06 -6.55 16 18 C -0.17 -4.57 9.94 30.59 0.30 -4.27 16 19 C -0.16 -4.31 10.18 30.62 0.31 -4.00 16 20 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 21 H 0.05 1.10 7.98 -2.39 -0.02 1.08 16 22 H 0.05 1.08 5.89 -2.39 -0.01 1.07 16 23 H 0.03 1.40 8.14 -2.38 -0.02 1.38 16 24 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 25 H 0.04 1.68 7.56 -2.39 -0.02 1.66 16 26 H 0.37 21.88 7.34 -92.70 -0.68 21.20 16 27 H 0.25 15.35 8.31 -92.71 -0.77 14.58 16 28 H 0.08 3.44 7.24 -2.39 -0.02 3.43 16 29 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.11 2.43 6.10 -2.39 -0.01 2.42 16 31 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.11 2.43 8.08 -2.38 -0.02 2.41 16 Total: -1.00 -67.34 265.47 3.95 -63.39 By element: Atomic # 1 Polarization: 27.05 SS G_CDS: 0.41 Total: 27.46 kcal Atomic # 6 Polarization: -27.45 SS G_CDS: 3.94 Total: -23.52 kcal Atomic # 7 Polarization: -100.27 SS G_CDS: -1.06 Total: -101.33 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: -1.37 Total: -15.67 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 2.03 Total: 49.66 kcal Total: -67.34 3.95 -63.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388275680.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.756 kcal (2) G-P(sol) polarization free energy of solvation -67.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds