Wall clock time and date at job start Mon Mar 30 2020 01:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53001 * 109.47281 * 2 1 4 4 N 1.46503 * 109.47062 * 182.67776 * 3 2 1 5 5 C 1.36932 * 119.99990 * 95.44126 * 4 3 2 6 6 H 1.08004 * 120.00061 * 218.02297 * 5 4 3 7 7 C 1.38815 * 120.00364 * 38.02343 * 5 4 3 8 8 N 1.31613 * 120.00322 * 212.03357 * 7 5 4 9 9 Si 1.86804 * 119.99865 * 31.75311 * 7 5 4 10 10 H 1.48491 * 109.47047 * 95.42808 * 9 7 5 11 11 H 1.48498 * 109.47035 * 215.43168 * 9 7 5 12 12 H 1.48507 * 109.46775 * 335.42899 * 9 7 5 13 13 C 1.46499 * 119.99695 * 275.43679 * 4 3 2 14 14 H 1.08997 * 115.55176 * 25.58391 * 13 4 3 15 15 C 1.53003 * 117.49523 * 171.25734 * 13 4 3 16 16 C 1.53001 * 117.49906 * 239.91254 * 13 4 3 17 17 H 1.09002 * 117.50044 * 0.02562 * 16 13 4 18 18 C 1.52998 * 117.49920 * 145.02402 * 16 13 4 19 19 O 1.42906 * 109.47318 * 185.00281 * 18 16 13 20 20 H 1.08999 * 109.47618 * 182.88185 * 1 2 3 21 21 H 1.09002 * 109.47190 * 302.88435 * 1 2 3 22 22 H 1.08999 * 109.47307 * 62.88025 * 1 2 3 23 23 H 1.08997 * 109.47396 * 239.99927 * 2 1 3 24 24 H 1.09004 * 109.47144 * 119.99663 * 2 1 3 25 25 H 1.09007 * 109.47175 * 62.67806 * 3 2 1 26 26 H 1.08999 * 109.46963 * 302.67445 * 3 2 1 27 27 H 0.96997 * 120.00422 * 180.02562 * 8 7 5 28 28 H 1.09002 * 117.49453 * 214.98028 * 15 13 4 29 29 H 1.08995 * 117.49927 * 359.97438 * 15 13 4 30 30 H 1.08998 * 109.47062 * 304.99682 * 18 16 13 31 31 H 1.08998 * 109.47473 * 65.00051 * 18 16 13 32 32 H 0.96689 * 114.00129 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5036 1.4429 -0.0645 5 6 4.1356 1.5740 -1.2722 6 1 5.0359 1.0126 -1.4742 7 6 3.6193 2.4283 -2.2368 8 7 3.7645 2.1439 -3.5136 9 14 2.7116 3.9779 -1.7225 10 1 3.6516 5.1273 -1.7287 11 1 1.6021 4.2405 -2.6740 12 1 2.1593 3.7974 -0.3558 13 6 4.2909 1.3033 1.1630 14 1 3.7936 0.7873 1.9843 15 6 5.8008 1.1052 1.0151 16 6 5.2496 2.4408 1.5206 17 1 5.2943 3.2932 0.8428 18 6 5.4374 2.7665 3.0037 19 8 6.2695 3.9207 3.1363 20 1 -0.3634 -1.0263 0.0517 21 1 -0.3634 0.5580 0.8630 22 1 -0.3634 0.4685 -0.9147 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 1.7164 1.9423 0.9131 26 1 1.6380 1.9700 -0.8650 27 1 3.4041 2.7411 -4.1876 28 1 6.2969 0.4591 1.7393 29 1 6.2082 1.0784 0.0045 30 1 4.4666 2.9644 3.4579 31 1 5.9074 1.9203 3.5049 32 1 6.4319 4.1853 4.0519 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388380051.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:27 Heat of formation + Delta-G solvation = -10.593443 kcal Electronic energy + Delta-G solvation = -13187.272463 eV Core-core repulsion = 10956.319128 eV Total energy + Delta-G solvation = -2230.953335 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -37.91167 -36.17965 -34.35847 -32.39062 -30.55556 -26.40961 -25.46495 -23.54557 -20.93197 -20.35693 -19.49891 -17.07691 -16.39415 -15.40230 -15.01405 -14.34140 -14.08470 -13.54431 -13.17252 -12.79292 -12.49459 -12.04286 -11.80325 -11.44013 -10.92116 -10.83809 -10.67127 -10.43458 -10.22599 -10.07031 -9.71115 -9.68743 -9.40293 -9.08801 -8.44252 -6.68768 -6.08845 -3.39806 3.37177 3.49675 3.56375 4.40952 4.55297 4.69713 4.98748 5.28135 5.54172 5.65614 5.68557 5.77367 5.79206 5.95255 5.99529 6.14353 6.21954 6.28557 6.40425 6.48779 6.58455 6.59628 6.94106 6.96156 7.13175 7.15303 7.91999 8.02024 8.39307 8.99804 9.69895 10.12102 11.06250 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.024860 B = 0.013796 C = 0.011045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.016442 B = 2029.013300 C = 2534.405825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.142 4.142 3 C 0.153 3.847 4 N -0.568 5.568 5 C -0.279 4.279 6 H 0.081 0.919 7 C 0.049 3.951 8 N -0.881 5.881 9 Si 0.849 3.151 10 H -0.289 1.289 11 H -0.294 1.294 12 H -0.260 1.260 13 C 0.136 3.864 14 H 0.093 0.907 15 C -0.183 4.183 16 C -0.201 4.201 17 H 0.106 0.894 18 C 0.113 3.887 19 O -0.573 6.573 20 H 0.045 0.955 21 H 0.045 0.955 22 H 0.051 0.949 23 H 0.068 0.932 24 H 0.048 0.952 25 H 0.034 0.966 26 H 0.056 0.944 27 H 0.264 0.736 28 H 0.078 0.922 29 H 0.103 0.897 30 H 0.040 0.960 31 H 0.038 0.962 32 H 0.368 0.632 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.970 -1.346 11.468 11.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.181 4.181 3 C 0.027 3.973 4 N -0.286 5.286 5 C -0.407 4.407 6 H 0.098 0.902 7 C -0.153 4.153 8 N -0.519 5.519 9 Si 0.676 3.324 10 H -0.217 1.217 11 H -0.220 1.220 12 H -0.184 1.184 13 C 0.026 3.974 14 H 0.111 0.889 15 C -0.221 4.221 16 C -0.224 4.224 17 H 0.125 0.875 18 C 0.036 3.964 19 O -0.377 6.377 20 H 0.064 0.936 21 H 0.065 0.935 22 H 0.070 0.930 23 H 0.087 0.913 24 H 0.067 0.933 25 H 0.052 0.948 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.096 0.904 29 H 0.121 0.879 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -2.050 -1.365 10.567 10.850 hybrid contribution -0.363 1.084 0.722 1.352 sum -2.413 -0.280 11.289 11.547 Atomic orbital electron populations 1.21734 0.97251 1.00521 1.01142 1.22086 0.93910 1.00318 1.01820 1.21185 0.83388 0.93746 0.98953 1.43761 1.00172 1.82869 1.01764 1.18635 1.12280 1.21378 0.88387 0.90200 1.25482 0.97423 0.97665 0.94772 1.70016 1.45946 1.35957 1.00010 0.87328 0.79238 0.86478 0.79348 1.21673 1.22039 1.18415 1.21261 0.88256 0.97268 0.90607 0.88935 1.23301 0.98118 0.98244 1.02485 1.22895 1.10682 0.94695 0.94097 0.87539 1.21745 0.92134 0.86387 0.96152 1.86581 1.72042 1.48137 1.30942 0.93567 0.93548 0.93035 0.91343 0.93271 0.94756 0.92570 0.92634 0.90373 0.87875 0.94211 0.94386 0.78642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.91 37.15 0.37 -1.94 16 2 C -0.14 -2.65 6.25 -26.74 -0.17 -2.82 16 3 C 0.15 3.31 3.88 -4.04 -0.02 3.29 16 4 N -0.57 -13.49 2.39 -165.66 -0.40 -13.88 16 5 C -0.28 -7.70 8.92 -15.06 -0.13 -7.83 16 6 H 0.08 2.37 6.65 -52.48 -0.35 2.02 16 7 C 0.05 1.40 5.04 -17.43 -0.09 1.32 16 8 N -0.88 -26.56 13.97 55.49 0.78 -25.79 16 9 Si 0.85 21.85 26.27 -169.99 -4.47 17.38 16 10 H -0.29 -7.67 7.11 56.52 0.40 -7.27 16 11 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 12 H -0.26 -6.40 5.81 56.52 0.33 -6.07 16 13 C 0.14 2.75 6.33 -67.93 -0.43 2.32 16 14 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 15 C -0.18 -3.56 9.48 -26.69 -0.25 -3.82 16 16 C -0.20 -4.02 5.80 -90.58 -0.53 -4.55 16 17 H 0.11 2.52 8.14 -51.93 -0.42 2.10 16 18 C 0.11 1.80 7.33 37.16 0.27 2.07 16 19 O -0.57 -9.14 13.66 -35.23 -0.48 -9.62 16 20 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 21 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 24 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.03 0.69 8.10 -51.93 -0.42 0.27 16 26 H 0.06 1.33 4.59 -51.93 -0.24 1.09 16 27 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 28 H 0.08 1.29 8.03 -51.93 -0.42 0.87 16 29 H 0.10 2.27 6.37 -51.93 -0.33 1.94 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.04 0.52 7.88 -51.93 -0.41 0.11 16 32 H 0.37 3.70 9.12 45.56 0.42 4.12 16 LS Contribution 263.42 15.07 3.97 3.97 Total: -1.00 -31.08 263.42 -5.91 -36.99 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -4.34 Total: 2.90 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: -0.97 Total: -11.95 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: 0.38 Total: -39.67 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: -0.48 Total: -9.62 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.47 Total: 17.38 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -31.08 -5.91 -36.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388380051.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.400 kcal (2) G-P(sol) polarization free energy of solvation -31.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds