Wall clock time and date at job start Mon Mar 30 2020 01:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47339 * 2 1 4 4 N 1.46497 * 109.47071 * 180.02562 * 3 2 1 5 5 C 1.36941 * 119.99737 * 264.50783 * 4 3 2 6 6 H 1.08007 * 119.99705 * 145.07253 * 5 4 3 7 7 C 1.38810 * 120.00232 * 325.07296 * 5 4 3 8 8 N 1.31618 * 120.00103 * 338.62306 * 7 5 4 9 9 Si 1.86799 * 120.00055 * 158.61607 * 7 5 4 10 10 H 1.48497 * 109.47190 * 0.02562 * 9 7 5 11 11 H 1.48510 * 109.46828 * 120.00295 * 9 7 5 12 12 H 1.48493 * 109.47529 * 240.00388 * 9 7 5 13 13 C 1.46500 * 120.00273 * 84.50932 * 4 3 2 14 14 H 1.09003 * 115.54963 * 334.33193 * 13 4 3 15 15 C 1.52996 * 117.49979 * 188.62016 * 13 4 3 16 16 C 1.53001 * 60.00374 * 252.51114 * 15 13 4 17 17 H 1.08995 * 117.51856 * 107.47866 * 16 15 13 18 18 C 1.52994 * 117.50164 * 252.51298 * 16 15 13 19 19 O 1.42899 * 109.47250 * 243.61768 * 18 16 15 20 20 H 1.09001 * 109.47389 * 300.00563 * 1 2 3 21 21 H 1.09000 * 109.47187 * 60.00076 * 1 2 3 22 22 H 1.09004 * 109.47260 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47389 * 239.99437 * 2 1 3 24 24 H 1.09000 * 109.47187 * 119.99924 * 2 1 3 25 25 H 1.08996 * 109.46798 * 59.99846 * 3 2 1 26 26 H 1.08998 * 109.46728 * 299.99578 * 3 2 1 27 27 H 0.96994 * 120.00017 * 179.97438 * 8 7 5 28 28 H 1.09000 * 117.50128 * 145.02289 * 15 13 4 29 29 H 1.09000 * 117.50024 * 0.02562 * 15 13 4 30 30 H 1.09009 * 109.46906 * 3.61958 * 18 16 15 31 31 H 1.09005 * 109.47745 * 123.61403 * 18 16 15 32 32 H 0.96700 * 114.00118 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1901 1.5558 1.1796 6 1 5.1243 1.0307 1.3143 7 6 3.6841 2.3454 2.2029 8 7 2.8134 3.2947 1.9325 9 14 4.2385 2.0606 3.9639 10 1 5.2152 0.9427 4.0006 11 1 4.8789 3.2943 4.4868 12 1 3.0627 1.7190 4.8040 13 6 4.2370 1.3212 -1.2638 14 1 3.7041 0.8160 -2.0694 15 6 5.7522 1.1243 -1.1861 16 6 5.1778 2.4652 -1.6478 17 1 5.2518 3.3080 -0.9607 18 6 5.2989 2.8119 -3.1329 19 8 6.1231 3.9692 -3.2862 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 1.6767 1.9563 0.8899 26 1 1.6767 1.9563 -0.8900 27 1 2.4595 3.8462 2.6476 28 1 6.2166 0.4893 -1.9406 29 1 6.2045 1.0846 -0.1952 30 1 5.7469 1.9735 -3.6664 31 1 4.3086 3.0145 -3.5408 32 1 6.2443 4.2469 -4.2045 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388380052.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:28 Heat of formation + Delta-G solvation = -36.624909 kcal Electronic energy + Delta-G solvation = -13120.592351 eV Core-core repulsion = 10888.510207 eV Total energy + Delta-G solvation = -2232.082144 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.38369 -37.50432 -35.82944 -34.14743 -31.86299 -27.74067 -27.26921 -25.14089 -22.31651 -21.84998 -21.18742 -18.48490 -18.10924 -17.13798 -16.36539 -15.87176 -15.56135 -15.04856 -14.79920 -14.20584 -13.87747 -13.48915 -13.16143 -12.99819 -12.65945 -12.44759 -12.21259 -12.03167 -11.87394 -11.62574 -11.46534 -11.25248 -11.11742 -10.56739 -10.38628 -8.50210 -7.85490 -5.44846 1.41190 1.44027 1.54334 2.46486 3.04337 3.27528 3.35149 3.76631 4.16506 4.31607 4.35916 4.47054 4.51763 4.55559 4.69965 4.75094 4.88281 4.93235 4.97568 5.12487 5.26922 5.31944 5.40630 5.54117 5.60436 5.68868 5.88560 6.44630 7.02780 7.14126 7.85016 8.33450 9.10125 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.023726 B = 0.012964 C = 0.009587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.864538 B = 2159.367770 C = 2919.996225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.129 4.129 3 C 0.147 3.853 4 N -0.571 5.571 5 C -0.262 4.262 6 H 0.061 0.939 7 C -0.040 4.040 8 N -0.919 5.919 9 Si 0.957 3.043 10 H -0.267 1.267 11 H -0.293 1.293 12 H -0.285 1.285 13 C 0.123 3.877 14 H 0.120 0.880 15 C -0.178 4.178 16 C -0.203 4.203 17 H 0.053 0.947 18 C 0.123 3.877 19 O -0.597 6.597 20 H 0.040 0.960 21 H 0.058 0.942 22 H 0.066 0.934 23 H 0.056 0.944 24 H 0.037 0.963 25 H 0.067 0.933 26 H 0.022 0.978 27 H 0.252 0.748 28 H 0.116 0.884 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.051 0.949 32 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.031 -5.074 -8.835 10.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.169 4.169 3 C 0.021 3.979 4 N -0.287 5.287 5 C -0.393 4.393 6 H 0.078 0.922 7 C -0.237 4.237 8 N -0.563 5.563 9 Si 0.785 3.215 10 H -0.191 1.191 11 H -0.220 1.220 12 H -0.211 1.211 13 C 0.014 3.986 14 H 0.137 0.863 15 C -0.216 4.216 16 C -0.226 4.226 17 H 0.072 0.928 18 C 0.045 3.955 19 O -0.406 6.406 20 H 0.059 0.941 21 H 0.077 0.923 22 H 0.085 0.915 23 H 0.075 0.925 24 H 0.056 0.944 25 H 0.085 0.915 26 H 0.041 0.959 27 H 0.061 0.939 28 H 0.134 0.866 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -0.060 -5.019 -8.055 9.490 hybrid contribution 0.310 0.478 0.668 0.878 sum 0.249 -4.541 -7.386 8.674 Atomic orbital electron populations 1.21637 0.94849 1.01762 1.01361 1.21931 0.95981 0.98553 1.00412 1.20967 0.82186 0.94339 1.00362 1.43767 1.01702 1.82386 1.00855 1.19285 1.06653 1.21921 0.91406 0.92173 1.25848 1.00262 0.94871 1.02740 1.70142 1.34756 1.19342 1.32037 0.85377 0.77813 0.77480 0.80838 1.19141 1.22042 1.21101 1.21572 0.89095 0.97790 0.90184 0.86297 1.23278 0.97587 0.98808 1.01909 1.22749 1.11042 0.92835 0.95937 0.92843 1.21642 0.93381 0.87347 0.93114 1.86512 1.72411 1.48012 1.33640 0.94062 0.92266 0.91457 0.92520 0.94398 0.91543 0.95924 0.93922 0.86609 0.91058 0.91282 0.93062 0.75632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.32 9.91 71.98 0.71 -3.61 16 2 C -0.13 -4.98 6.25 30.59 0.19 -4.79 16 3 C 0.15 6.96 5.28 86.38 0.46 7.42 16 4 N -0.57 -28.82 2.79 -678.02 -1.89 -30.71 16 5 C -0.26 -14.60 8.68 84.03 0.73 -13.87 16 6 H 0.06 3.36 6.37 -2.91 -0.02 3.34 16 7 C -0.04 -2.28 4.93 84.86 0.42 -1.86 16 8 N -0.92 -54.88 11.36 21.65 0.25 -54.63 16 9 Si 0.96 45.61 29.60 68.60 2.03 47.64 16 10 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 11 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 12 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 13 C 0.12 5.17 6.33 44.99 0.28 5.45 16 14 H 0.12 4.23 8.14 -2.39 -0.02 4.21 16 15 C -0.18 -6.92 9.47 30.59 0.29 -6.63 16 16 C -0.20 -8.54 5.80 -10.79 -0.06 -8.60 16 17 H 0.05 2.85 8.14 -2.39 -0.02 2.83 16 18 C 0.12 3.85 7.33 71.98 0.53 4.38 16 19 O -0.60 -19.07 13.66 -148.98 -2.03 -21.11 16 20 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 21 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 22 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 23 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 24 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.07 3.64 5.39 -2.39 -0.01 3.63 16 26 H 0.02 1.03 8.11 -2.39 -0.02 1.01 16 27 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 28 H 0.12 3.55 8.03 -2.39 -0.02 3.54 16 29 H 0.07 3.15 6.31 -2.39 -0.02 3.13 16 30 H 0.07 1.73 7.88 -2.38 -0.02 1.71 16 31 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 32 H 0.39 7.51 9.12 -74.06 -0.68 6.84 16 Total: -1.00 -67.02 267.37 2.31 -64.71 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: 0.42 Total: 16.20 kcal Atomic # 6 Polarization: -25.66 SS G_CDS: 3.55 Total: -22.11 kcal Atomic # 7 Polarization: -83.69 SS G_CDS: -1.65 Total: -85.34 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -2.03 Total: -21.11 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -67.02 2.31 -64.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388380052.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.085 kcal (2) G-P(sol) polarization free energy of solvation -67.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds