Wall clock time and date at job start Mon Mar 30 2020 01:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52991 * 109.47577 * 2 1 4 4 N 1.46498 * 109.47528 * 179.97438 * 3 2 1 5 5 C 1.36940 * 120.00067 * 264.32935 * 4 3 2 6 6 H 1.08001 * 120.00011 * 135.41496 * 5 4 3 7 7 C 1.38812 * 119.99800 * 315.41588 * 5 4 3 8 8 N 1.31626 * 119.99802 * 3.01975 * 7 5 4 9 9 Si 1.86794 * 119.99911 * 183.02380 * 7 5 4 10 10 H 1.48497 * 109.47273 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47164 * 120.00046 * 9 7 5 12 12 H 1.48502 * 109.46820 * 239.99671 * 9 7 5 13 13 C 1.46499 * 120.00033 * 84.32175 * 4 3 2 14 14 H 1.09006 * 115.56278 * 31.22645 * 13 4 3 15 15 C 1.53073 * 117.51236 * 176.92891 * 13 4 3 16 16 C 1.52999 * 117.50057 * 245.53973 * 13 4 3 17 17 H 1.09002 * 117.50061 * 144.99794 * 16 13 4 18 18 C 1.53001 * 117.50044 * 359.97438 * 16 13 4 19 19 O 1.42895 * 109.47194 * 169.00463 * 18 16 13 20 20 H 1.09005 * 109.46772 * 59.99793 * 1 2 3 21 21 H 1.09000 * 109.47725 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47105 * 300.00330 * 1 2 3 23 23 H 1.09009 * 109.46767 * 239.99312 * 2 1 3 24 24 H 1.09005 * 109.46772 * 120.00207 * 2 1 3 25 25 H 1.08998 * 109.47173 * 59.99711 * 3 2 1 26 26 H 1.09005 * 109.47239 * 299.99921 * 3 2 1 27 27 H 0.96998 * 119.99543 * 180.02562 * 8 7 5 28 28 H 1.08998 * 117.51487 * 0.02562 * 15 13 4 29 29 H 1.08997 * 117.51222 * 214.95632 * 15 13 4 30 30 H 1.08998 * 109.47169 * 48.99817 * 18 16 13 31 31 H 1.09010 * 109.46739 * 289.00475 * 18 16 13 32 32 H 0.96704 * 114.00076 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1893 1.5597 1.1810 6 1 5.0361 0.9197 1.3803 7 6 3.7944 2.5013 2.1214 8 7 2.7270 3.2403 1.9047 9 14 4.7779 2.7196 3.6944 10 1 5.9237 1.7749 3.6970 11 1 5.2847 4.1133 3.7720 12 1 3.9069 2.4438 4.8651 13 6 4.2381 1.3166 -1.2615 14 1 3.7454 1.7419 -2.1360 15 6 5.7657 1.3955 -1.2030 16 6 5.0781 0.0546 -1.4680 17 1 5.1377 -0.3506 -2.4782 18 6 5.0887 -0.9793 -0.3403 19 8 5.7032 -2.1833 -0.8036 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 1.8933 -0.5140 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 1.6768 1.9563 0.8899 26 1 1.6768 1.9563 -0.8900 27 1 2.4513 3.8985 2.5617 28 1 6.2253 1.5405 -0.2253 29 1 6.2777 1.8724 -2.0387 30 1 4.0651 -1.1897 -0.0306 31 1 5.6513 -0.5870 0.5070 32 1 5.7442 -2.8849 -0.1394 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388380053.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:30 Heat of formation + Delta-G solvation = -34.882445 kcal Electronic energy + Delta-G solvation = -13442.949662 eV Core-core repulsion = 11210.943077 eV Total energy + Delta-G solvation = -2232.006585 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.54311 -37.27385 -35.76618 -34.13532 -31.69375 -27.76318 -27.37452 -25.07867 -22.36316 -22.00485 -20.77180 -18.64124 -17.87771 -17.15071 -16.28049 -15.79551 -15.42235 -15.08891 -14.71242 -14.39956 -13.99941 -13.27543 -13.13684 -12.88039 -12.70025 -12.43337 -12.24643 -11.96898 -11.94362 -11.65254 -11.47158 -11.22320 -10.90083 -10.47122 -10.37336 -8.36242 -7.73724 -5.55971 1.43998 1.47492 1.55560 2.46627 3.10729 3.34757 3.41304 3.57231 4.28570 4.36650 4.38151 4.45314 4.59495 4.61483 4.76620 4.80465 4.91960 4.97872 5.04214 5.17203 5.25605 5.33597 5.40925 5.53241 5.63104 5.70123 6.03661 6.58655 6.92962 7.23113 7.86695 8.40950 9.14316 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.022818 B = 0.015527 C = 0.011440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.796378 B = 1802.872228 C = 2446.906861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.140 3.860 4 N -0.568 5.568 5 C -0.256 4.256 6 H 0.061 0.939 7 C -0.031 4.031 8 N -0.919 5.919 9 Si 0.956 3.044 10 H -0.268 1.268 11 H -0.290 1.290 12 H -0.289 1.289 13 C 0.116 3.884 14 H 0.098 0.902 15 C -0.180 4.180 16 C -0.188 4.188 17 H 0.103 0.897 18 C 0.129 3.871 19 O -0.591 6.591 20 H 0.056 0.944 21 H 0.062 0.938 22 H 0.044 0.956 23 H 0.044 0.956 24 H 0.035 0.965 25 H 0.087 0.913 26 H 0.016 0.984 27 H 0.252 0.748 28 H 0.080 0.920 29 H 0.103 0.897 30 H 0.040 0.960 31 H 0.033 0.967 32 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.674 -6.220 -3.282 7.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.014 3.986 4 N -0.285 5.285 5 C -0.387 4.387 6 H 0.078 0.922 7 C -0.228 4.228 8 N -0.563 5.563 9 Si 0.784 3.216 10 H -0.193 1.193 11 H -0.217 1.217 12 H -0.216 1.216 13 C 0.006 3.994 14 H 0.116 0.884 15 C -0.219 4.219 16 C -0.210 4.210 17 H 0.122 0.878 18 C 0.052 3.948 19 O -0.399 6.399 20 H 0.075 0.925 21 H 0.081 0.919 22 H 0.063 0.937 23 H 0.063 0.937 24 H 0.054 0.946 25 H 0.105 0.895 26 H 0.034 0.966 27 H 0.062 0.938 28 H 0.099 0.901 29 H 0.121 0.879 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 0.621 -5.709 -3.696 6.829 hybrid contribution 0.395 0.066 1.433 1.488 sum 1.016 -5.643 -2.263 6.164 Atomic orbital electron populations 1.21628 0.95072 1.01466 1.01376 1.21956 0.95856 0.99347 0.99529 1.21206 0.82632 0.93681 1.01038 1.43484 1.01325 1.83147 1.00542 1.19224 1.12125 1.12862 0.94455 0.92171 1.26144 0.98246 0.95855 1.02519 1.69856 1.25181 1.24856 1.36453 0.85388 0.78916 0.77490 0.79807 1.19262 1.21704 1.21612 1.21453 0.90155 0.97254 0.90489 0.88416 1.23225 0.96353 1.00004 1.02270 1.22780 1.09589 0.89725 0.98896 0.87848 1.21418 0.95498 0.83579 0.94346 1.86367 1.83310 1.25702 1.44491 0.92522 0.91910 0.93698 0.93727 0.94643 0.89498 0.96554 0.93804 0.90107 0.87903 0.94197 0.94842 0.76018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.45 9.91 71.98 0.71 -3.74 16 2 C -0.13 -5.02 5.82 30.59 0.18 -4.85 16 3 C 0.14 6.54 5.25 86.38 0.45 7.00 16 4 N -0.57 -27.50 2.36 -677.91 -1.60 -29.10 16 5 C -0.26 -13.36 7.60 84.03 0.64 -12.72 16 6 H 0.06 3.13 5.14 -2.91 -0.01 3.11 16 7 C -0.03 -1.65 5.36 84.86 0.45 -1.20 16 8 N -0.92 -51.92 10.76 21.65 0.23 -51.68 16 9 Si 0.96 43.43 29.55 68.60 2.03 45.45 16 10 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 11 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 12 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 13 C 0.12 4.88 6.57 45.02 0.30 5.17 16 14 H 0.10 3.87 8.14 -2.38 -0.02 3.85 16 15 C -0.18 -7.02 9.46 30.62 0.29 -6.73 16 16 C -0.19 -7.16 6.06 -10.79 -0.07 -7.22 16 17 H 0.10 3.68 8.14 -2.39 -0.02 3.66 16 18 C 0.13 4.89 6.06 71.98 0.44 5.32 16 19 O -0.59 -19.54 13.66 -148.98 -2.03 -21.57 16 20 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 21 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 22 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 23 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 24 H 0.03 1.49 8.14 -2.38 -0.02 1.47 16 25 H 0.09 4.67 5.22 -2.39 -0.01 4.65 16 26 H 0.02 0.74 8.11 -2.38 -0.02 0.72 16 27 H 0.25 13.79 8.31 -92.71 -0.77 13.02 16 28 H 0.08 3.47 6.61 -2.39 -0.02 3.45 16 29 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 30 H 0.04 1.61 7.63 -2.39 -0.02 1.59 16 31 H 0.03 1.36 6.12 -2.38 -0.01 1.34 16 32 H 0.39 8.99 9.12 -74.05 -0.68 8.32 16 Total: -1.00 -59.12 261.14 2.44 -56.67 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: 0.42 Total: 19.19 kcal Atomic # 6 Polarization: -22.36 SS G_CDS: 3.39 Total: -18.96 kcal Atomic # 7 Polarization: -79.42 SS G_CDS: -1.37 Total: -80.78 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: -2.03 Total: -21.57 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.45 kcal Total: -59.12 2.44 -56.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388380053.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.788 kcal (2) G-P(sol) polarization free energy of solvation -59.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds