Wall clock time and date at job start Mon Mar 30 2020 02:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 115.55502 * 2 1 4 4 C 1.53082 * 117.51220 * 145.71870 * 2 1 3 5 5 C 1.53002 * 59.98285 * 107.48171 * 4 2 1 6 6 H 1.08994 * 117.50328 * 107.50578 * 5 4 2 7 7 N 1.46904 * 117.49978 * 252.50294 * 5 4 2 8 8 C 1.46899 * 111.00029 * 223.74833 * 7 5 4 9 9 C 1.52997 * 109.47254 * 179.97438 * 8 7 5 10 10 O 1.42904 * 109.47396 * 64.99580 * 9 8 7 11 11 C 1.42896 * 114.00313 * 180.02562 * 10 9 8 12 12 C 1.50699 * 109.46851 * 180.02562 * 11 10 9 13 13 H 1.07999 * 120.00616 * 359.97438 * 12 11 10 14 14 C 1.37884 * 119.99887 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00088 * 179.97438 * 14 12 11 16 16 Si 1.86804 * 119.99729 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.46826 * 90.00506 * 16 14 12 18 18 H 1.48499 * 109.46915 * 210.00165 * 16 14 12 19 19 H 1.48497 * 109.47614 * 330.00712 * 16 14 12 20 20 H 1.08997 * 109.47461 * 205.66467 * 1 2 3 21 21 H 1.08996 * 109.47097 * 325.67618 * 1 2 3 22 22 H 1.09004 * 109.46652 * 85.67005 * 1 2 3 23 23 H 1.09001 * 117.51087 * 0.02562 * 4 2 1 24 24 H 1.08991 * 117.49699 * 214.96653 * 4 2 1 25 25 H 1.00902 * 111.00190 * 99.78533 * 7 5 4 26 26 H 1.09002 * 109.47043 * 299.99792 * 8 7 5 27 27 H 1.09001 * 109.47354 * 59.99854 * 8 7 5 28 28 H 1.09001 * 109.47630 * 184.99901 * 9 8 7 29 29 H 1.09004 * 109.47346 * 305.00031 * 9 8 7 30 30 H 1.08999 * 109.46799 * 300.00326 * 11 10 9 31 31 H 1.08998 * 109.47187 * 59.99969 * 11 10 9 32 32 H 0.97003 * 119.99801 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2371 -1.1218 0.7647 5 6 2.2365 -1.1208 -0.7653 6 1 3.1713 -0.8747 -1.2688 7 7 1.3938 -2.1144 -1.4440 8 6 2.1107 -2.7340 -2.5665 9 6 1.2033 -3.7611 -3.2466 10 8 0.0849 -3.0935 -3.8345 11 6 -0.8302 -3.9672 -4.4987 12 6 -1.9636 -3.1607 -5.0785 13 1 -1.9833 -2.0884 -4.9521 14 6 -2.9760 -3.7922 -5.7695 15 7 -3.9653 -3.0885 -6.2751 16 14 -2.9422 -5.6471 -5.9876 17 1 -3.6515 -6.2918 -4.8533 18 1 -3.6148 -6.0080 -7.2614 19 1 -1.5336 -6.1161 -6.0213 20 1 -0.3634 -0.9262 0.4451 21 1 -0.3633 0.8487 0.5794 22 1 -0.3633 0.0776 -1.0248 23 1 1.6122 -1.8601 1.2674 24 1 3.1722 -0.8761 1.2678 25 1 0.5259 -1.7024 -1.7523 26 1 2.3930 -1.9653 -3.2860 27 1 3.0070 -3.2309 -2.1954 28 1 1.7633 -4.2837 -4.0221 29 1 0.8498 -4.4797 -2.5071 30 1 -0.3125 -4.4943 -5.3001 31 1 -1.2258 -4.6897 -3.7849 32 1 -4.6773 -3.5327 -6.7616 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395459436.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:46 Heat of formation + Delta-G solvation = -30.894663 kcal Electronic energy + Delta-G solvation = -12541.201929 eV Core-core repulsion = 10309.368268 eV Total energy + Delta-G solvation = -2231.833662 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.35435 -36.92908 -33.67521 -32.49225 -28.87626 -28.15984 -26.89164 -21.93676 -21.67963 -21.38111 -19.94296 -16.89116 -16.09186 -15.91463 -15.17117 -14.99110 -14.38109 -13.81507 -13.17915 -12.84024 -12.69597 -12.46288 -12.13386 -11.75603 -11.51691 -11.34858 -11.04672 -10.75612 -10.67092 -10.34041 -9.86823 -9.78402 -9.19610 -8.86050 -8.47944 -8.10072 -6.12447 -4.11558 3.24910 3.31752 3.33359 3.83381 4.18253 4.35161 4.68269 4.81710 4.99377 5.19205 5.24163 5.37558 5.44019 5.61064 5.66037 5.83973 5.89173 5.92418 6.00732 6.08773 6.15894 6.24193 6.40713 6.61089 6.99772 7.24085 7.57526 7.62411 8.00111 8.65268 8.98055 9.46906 11.00536 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.049529 B = 0.006783 C = 0.006238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.194905 B = 4127.161680 C = 4487.729198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.167 4.167 3 H 0.100 0.900 4 C -0.170 4.170 5 C 0.020 3.980 6 H 0.095 0.905 7 N -0.658 5.658 8 C 0.068 3.932 9 C 0.057 3.943 10 O -0.385 6.385 11 C 0.171 3.829 12 C -0.520 4.520 13 H 0.082 0.918 14 C 0.072 3.928 15 N -0.895 5.895 16 Si 0.876 3.124 17 H -0.273 1.273 18 H -0.282 1.282 19 H -0.267 1.267 20 H 0.063 0.937 21 H 0.057 0.943 22 H 0.063 0.937 23 H 0.098 0.902 24 H 0.088 0.912 25 H 0.359 0.641 26 H 0.037 0.963 27 H 0.077 0.923 28 H 0.043 0.957 29 H 0.048 0.952 30 H 0.002 0.998 31 H 0.000 1.000 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.768 1.669 10.470 15.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.187 4.187 3 H 0.118 0.882 4 C -0.209 4.209 5 C -0.091 4.091 6 H 0.113 0.887 7 N -0.291 5.291 8 C -0.062 4.062 9 C -0.021 4.021 10 O -0.304 6.304 11 C 0.096 3.904 12 C -0.557 4.557 13 H 0.100 0.900 14 C -0.130 4.130 15 N -0.534 5.534 16 Si 0.703 3.297 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.191 1.191 20 H 0.082 0.918 21 H 0.076 0.924 22 H 0.082 0.918 23 H 0.116 0.884 24 H 0.107 0.893 25 H 0.181 0.819 26 H 0.056 0.944 27 H 0.095 0.905 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.020 0.980 31 H 0.017 0.983 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 11.693 1.335 10.773 15.955 hybrid contribution -0.010 -0.574 -0.839 1.017 sum 11.683 0.762 9.934 15.354 Atomic orbital electron populations 1.21277 0.92410 1.02139 1.02318 1.22637 0.96061 0.94184 1.05791 0.88225 1.23263 1.01946 1.01002 0.94652 1.22436 0.97926 0.95357 0.93422 0.88702 1.60218 1.07278 1.32545 1.29053 1.21979 0.96107 0.96954 0.91125 1.22397 0.89209 0.94773 0.95735 1.87844 1.34475 1.35293 1.72797 1.20580 0.88468 0.90684 0.90712 1.20890 1.04224 0.96597 1.34038 0.90034 1.24768 0.94932 0.98283 0.94968 1.69877 1.11257 1.35799 1.36453 0.86841 0.78766 0.85958 0.78127 1.19881 1.20786 1.19128 0.91831 0.92375 0.91837 0.88393 0.89329 0.81879 0.94444 0.90452 0.93858 0.93371 0.98017 0.98273 0.92360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.51 9.12 37.15 0.34 -1.18 16 2 C -0.17 -1.94 6.41 -90.58 -0.58 -2.52 16 3 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 4 C -0.17 -1.92 10.11 -26.69 -0.27 -2.19 16 5 C 0.02 0.25 6.24 -67.71 -0.42 -0.17 16 6 H 0.10 1.11 7.90 -51.93 -0.41 0.70 16 7 N -0.66 -10.02 6.56 -106.72 -0.70 -10.72 16 8 C 0.07 1.01 5.96 -3.83 -0.02 0.99 16 9 C 0.06 1.01 6.28 37.16 0.23 1.25 16 10 O -0.38 -8.92 9.85 -35.23 -0.35 -9.27 16 11 C 0.17 4.37 4.76 36.00 0.17 4.54 16 12 C -0.52 -15.50 9.99 -34.44 -0.34 -15.84 16 13 H 0.08 2.65 8.06 -52.49 -0.42 2.23 16 14 C 0.07 2.13 5.47 -17.82 -0.10 2.04 16 15 N -0.90 -27.68 13.96 55.43 0.77 -26.91 16 16 Si 0.88 21.51 27.47 -169.99 -4.67 16.84 16 17 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 20 H 0.06 0.81 7.90 -51.93 -0.41 0.40 16 21 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.06 0.85 7.59 -51.93 -0.39 0.46 16 23 H 0.10 1.17 8.05 -51.93 -0.42 0.76 16 24 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.36 6.11 6.76 -39.29 -0.27 5.85 16 26 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.00 0.05 7.20 -51.93 -0.37 -0.32 16 31 H 0.00 -0.01 7.57 -51.93 -0.39 -0.40 16 32 H 0.27 7.62 8.31 -40.82 -0.34 7.29 16 LS Contribution 269.25 15.07 4.06 4.06 Total: -1.00 -30.85 269.25 -7.09 -37.94 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -5.21 Total: 1.14 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: -0.99 Total: -13.09 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: 0.07 Total: -37.63 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: -0.35 Total: -9.27 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -30.85 -7.09 -37.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395459436.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.048 kcal (2) G-P(sol) polarization free energy of solvation -30.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds