Wall clock time and date at job start Mon Mar 30 2020 02:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 115.55502 * 2 1 4 4 C 1.53082 * 117.51220 * 145.71870 * 2 1 3 5 5 C 1.53002 * 59.98285 * 107.48171 * 4 2 1 6 6 H 1.08994 * 117.50328 * 107.50578 * 5 4 2 7 7 N 1.46904 * 117.49978 * 252.50294 * 5 4 2 8 8 C 1.46899 * 111.00029 * 223.74833 * 7 5 4 9 9 C 1.52997 * 109.47254 * 179.97438 * 8 7 5 10 10 O 1.42904 * 109.47396 * 64.99580 * 9 8 7 11 11 C 1.42896 * 114.00313 * 180.02562 * 10 9 8 12 12 C 1.50699 * 109.46851 * 180.02562 * 11 10 9 13 13 H 1.07999 * 120.00616 * 359.97438 * 12 11 10 14 14 C 1.37884 * 119.99887 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00088 * 179.97438 * 14 12 11 16 16 Si 1.86804 * 119.99729 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.46826 * 90.00506 * 16 14 12 18 18 H 1.48499 * 109.46915 * 210.00165 * 16 14 12 19 19 H 1.48497 * 109.47614 * 330.00712 * 16 14 12 20 20 H 1.08997 * 109.47461 * 205.66467 * 1 2 3 21 21 H 1.08996 * 109.47097 * 325.67618 * 1 2 3 22 22 H 1.09004 * 109.46652 * 85.67005 * 1 2 3 23 23 H 1.09001 * 117.51087 * 0.02562 * 4 2 1 24 24 H 1.08991 * 117.49699 * 214.96653 * 4 2 1 25 25 H 1.00902 * 111.00190 * 99.78533 * 7 5 4 26 26 H 1.09002 * 109.47043 * 299.99792 * 8 7 5 27 27 H 1.09001 * 109.47354 * 59.99854 * 8 7 5 28 28 H 1.09001 * 109.47630 * 184.99901 * 9 8 7 29 29 H 1.09004 * 109.47346 * 305.00031 * 9 8 7 30 30 H 1.08999 * 109.46799 * 300.00326 * 11 10 9 31 31 H 1.08998 * 109.47187 * 59.99969 * 11 10 9 32 32 H 0.97003 * 119.99801 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2371 -1.1218 0.7647 5 6 2.2365 -1.1208 -0.7653 6 1 3.1713 -0.8747 -1.2688 7 7 1.3938 -2.1144 -1.4440 8 6 2.1107 -2.7340 -2.5665 9 6 1.2033 -3.7611 -3.2466 10 8 0.0849 -3.0935 -3.8345 11 6 -0.8302 -3.9672 -4.4987 12 6 -1.9636 -3.1607 -5.0785 13 1 -1.9833 -2.0884 -4.9521 14 6 -2.9760 -3.7922 -5.7695 15 7 -3.9653 -3.0885 -6.2751 16 14 -2.9422 -5.6471 -5.9876 17 1 -3.6515 -6.2918 -4.8533 18 1 -3.6148 -6.0080 -7.2614 19 1 -1.5336 -6.1161 -6.0213 20 1 -0.3634 -0.9262 0.4451 21 1 -0.3633 0.8487 0.5794 22 1 -0.3633 0.0776 -1.0248 23 1 1.6122 -1.8601 1.2674 24 1 3.1722 -0.8761 1.2678 25 1 0.5259 -1.7024 -1.7523 26 1 2.3930 -1.9653 -3.2860 27 1 3.0070 -3.2309 -2.1954 28 1 1.7633 -4.2837 -4.0221 29 1 0.8498 -4.4797 -2.5071 30 1 -0.3125 -4.4943 -5.3001 31 1 -1.2258 -4.6897 -3.7849 32 1 -4.6773 -3.5327 -6.7616 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395459436.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:45 Heat of formation + Delta-G solvation = -52.761402 kcal Electronic energy + Delta-G solvation = -12542.150142 eV Core-core repulsion = 10309.368268 eV Total energy + Delta-G solvation = -2232.781875 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.46199 -38.51318 -35.20040 -34.44571 -30.58310 -29.36815 -28.41322 -24.01772 -22.97486 -22.38070 -20.92583 -19.07201 -17.55037 -17.22747 -16.61143 -16.33933 -16.25033 -15.18068 -14.83617 -14.34922 -13.99734 -13.86215 -13.36350 -13.21887 -12.94709 -12.72339 -12.51710 -12.28283 -12.11959 -11.84378 -11.45738 -11.32384 -10.94133 -10.74964 -10.36821 -9.21177 -8.38375 -6.46395 1.33165 1.35988 1.46840 2.28712 2.86264 2.94412 3.08952 3.11831 3.87625 4.04405 4.18945 4.21577 4.41766 4.46498 4.50625 4.55948 4.71191 4.79668 4.90215 4.91314 4.99942 5.00015 5.06513 5.21804 5.42470 5.45250 5.91808 6.15698 6.33235 6.57327 6.72449 7.18155 8.78658 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.049529 B = 0.006783 C = 0.006238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.194905 B = 4127.161680 C = 4487.729198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.168 4.168 3 H 0.117 0.883 4 C -0.156 4.156 5 C 0.002 3.998 6 H 0.108 0.892 7 N -0.669 5.669 8 C 0.073 3.927 9 C 0.049 3.951 10 O -0.408 6.408 11 C 0.181 3.819 12 C -0.546 4.546 13 H 0.030 0.970 14 C 0.014 3.986 15 N -0.942 5.942 16 Si 0.956 3.044 17 H -0.260 1.260 18 H -0.273 1.273 19 H -0.246 1.246 20 H 0.052 0.948 21 H 0.073 0.927 22 H 0.043 0.957 23 H 0.088 0.912 24 H 0.113 0.887 25 H 0.343 0.657 26 H 0.032 0.968 27 H 0.108 0.892 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.012 0.988 31 H 0.010 0.990 32 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.382 0.048 11.244 17.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.187 4.187 3 H 0.135 0.865 4 C -0.194 4.194 5 C -0.109 4.109 6 H 0.126 0.874 7 N -0.300 5.300 8 C -0.056 4.056 9 C -0.028 4.028 10 O -0.328 6.328 11 C 0.105 3.895 12 C -0.584 4.584 13 H 0.049 0.951 14 C -0.185 4.185 15 N -0.581 5.581 16 Si 0.777 3.223 17 H -0.185 1.185 18 H -0.198 1.198 19 H -0.169 1.169 20 H 0.071 0.929 21 H 0.092 0.908 22 H 0.062 0.938 23 H 0.107 0.893 24 H 0.131 0.869 25 H 0.163 0.837 26 H 0.051 0.949 27 H 0.126 0.874 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.030 0.970 31 H 0.027 0.973 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 13.340 -0.274 11.570 17.661 hybrid contribution -0.498 0.055 -1.038 1.153 sum 12.842 -0.219 10.532 16.610 Atomic orbital electron populations 1.21254 0.93355 1.02293 1.01193 1.22715 0.95418 0.95016 1.05569 0.86470 1.23292 1.02598 1.00097 0.93458 1.22600 0.98239 0.95734 0.94279 0.87406 1.60283 1.07184 1.33537 1.29043 1.22004 0.96216 0.96393 0.90968 1.22726 0.88021 0.95746 0.96279 1.87810 1.35831 1.36089 1.73034 1.20293 0.87816 0.90166 0.91175 1.21165 1.06815 0.94901 1.35530 0.95140 1.25837 0.93925 1.04746 0.93944 1.70031 1.12224 1.38678 1.37158 0.85606 0.80096 0.77886 0.78737 1.18464 1.19757 1.16914 0.92894 0.90764 0.93838 0.89334 0.86926 0.83709 0.94922 0.87409 0.92070 0.92956 0.96983 0.97266 0.91778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.01 9.12 71.98 0.66 -2.36 16 2 C -0.17 -3.66 6.41 -10.77 -0.07 -3.73 16 3 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 4 C -0.16 -3.17 10.11 30.62 0.31 -2.86 16 5 C 0.00 0.04 6.24 44.92 0.28 0.33 16 6 H 0.11 2.28 7.90 -2.39 -0.02 2.26 16 7 N -0.67 -19.90 6.56 -491.56 -3.22 -23.12 16 8 C 0.07 2.07 5.96 86.30 0.51 2.59 16 9 C 0.05 1.68 6.28 71.98 0.45 2.13 16 10 O -0.41 -18.96 9.85 -148.98 -1.47 -20.43 16 11 C 0.18 9.18 4.76 71.24 0.34 9.52 16 12 C -0.55 -33.54 9.99 25.60 0.26 -33.28 16 13 H 0.03 2.10 8.06 -2.91 -0.02 2.08 16 14 C 0.01 0.81 5.47 84.66 0.46 1.27 16 15 N -0.94 -59.51 13.96 21.45 0.30 -59.21 16 16 Si 0.96 43.60 27.47 68.60 1.88 45.49 16 17 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 18 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 19 H -0.25 -10.33 6.54 99.48 0.65 -9.68 16 20 H 0.05 1.37 7.90 -2.39 -0.02 1.35 16 21 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 22 H 0.04 1.22 7.59 -2.38 -0.02 1.20 16 23 H 0.09 1.99 8.05 -2.39 -0.02 1.97 16 24 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.34 11.93 6.76 -89.69 -0.61 11.32 16 26 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 28 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.01 0.60 7.20 -2.39 -0.02 0.58 16 31 H 0.01 0.46 7.57 -2.39 -0.02 0.45 16 32 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 Total: -1.00 -67.76 269.25 1.11 -66.65 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: 0.42 Total: 17.03 kcal Atomic # 6 Polarization: -29.60 SS G_CDS: 3.20 Total: -26.40 kcal Atomic # 7 Polarization: -79.41 SS G_CDS: -2.93 Total: -82.33 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -1.47 Total: -20.43 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 1.88 Total: 45.49 kcal Total: -67.76 1.11 -66.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395459436.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.891 kcal (2) G-P(sol) polarization free energy of solvation -67.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds