Wall clock time and date at job start Mon Mar 30 2020 02:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 115.54716 * 2 1 4 4 C 1.52998 * 117.49812 * 145.70223 * 2 1 3 5 5 C 1.52996 * 117.50151 * 214.32887 * 2 1 3 6 6 H 1.09001 * 117.49698 * 0.02562 * 5 2 1 7 7 N 1.46902 * 117.50242 * 145.02054 * 5 2 1 8 8 C 1.46894 * 110.99820 * 204.99972 * 7 5 2 9 9 C 1.53009 * 109.46764 * 180.02562 * 8 7 5 10 10 O 1.42899 * 109.47113 * 64.99856 * 9 8 7 11 11 C 1.42903 * 113.99629 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.46878 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99594 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 119.99875 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.47061 * 90.00257 * 16 14 12 18 18 H 1.48497 * 109.46906 * 209.99430 * 16 14 12 19 19 H 1.48498 * 109.47403 * 329.99876 * 16 14 12 20 20 H 1.09002 * 109.46916 * 205.66882 * 1 2 3 21 21 H 1.08993 * 109.47297 * 325.67171 * 1 2 3 22 22 H 1.08998 * 109.46945 * 85.67671 * 1 2 3 23 23 H 1.08996 * 117.50123 * 0.02562 * 4 2 1 24 24 H 1.09004 * 117.49861 * 214.97692 * 4 2 1 25 25 H 1.00897 * 110.99841 * 328.95386 * 7 5 2 26 26 H 1.09000 * 109.47283 * 59.99980 * 8 7 5 27 27 H 1.09002 * 109.47562 * 299.99300 * 8 7 5 28 28 H 1.09007 * 109.46516 * 304.99789 * 9 8 7 29 29 H 1.09004 * 109.47113 * 185.00258 * 9 8 7 30 30 H 1.09002 * 109.47382 * 59.99956 * 11 10 9 31 31 H 1.09001 * 109.46938 * 299.99942 * 11 10 9 32 32 H 0.97002 * 119.99739 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2364 -1.1212 0.7647 5 6 2.2365 -1.1207 -0.7653 6 1 1.6113 -1.8578 -1.2692 7 7 3.4967 -0.7892 -1.4435 8 6 3.7455 -1.7018 -2.5674 9 6 5.0641 -1.3263 -3.2469 10 8 6.1461 -1.5413 -2.3386 11 6 7.4298 -1.2189 -2.8773 12 6 8.4905 -1.4816 -1.8395 13 1 8.2121 -1.8576 -0.8660 14 6 9.8164 -1.2430 -2.1330 15 7 10.7419 -1.4728 -1.2275 16 14 10.2978 -0.5934 -3.8169 17 1 10.2930 0.8914 -3.7946 18 1 11.6576 -1.0787 -4.1644 19 1 9.3258 -1.0765 -4.8304 20 1 -0.3633 -0.9263 0.4452 21 1 -0.3633 0.8486 0.5795 22 1 -0.3633 0.0775 -1.0247 23 1 1.6112 -1.8590 1.2675 24 1 3.1716 -0.8755 1.2681 25 1 3.5002 0.1719 -1.7505 26 1 2.9304 -1.6230 -3.2867 27 1 3.8064 -2.7254 -2.1978 28 1 5.0367 -0.2760 -3.5375 29 1 5.2052 -1.9450 -4.1331 30 1 7.4514 -0.1664 -3.1600 31 1 7.6202 -1.8351 -3.7560 32 1 11.6747 -1.3046 -1.4339 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395459438.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:47 Heat of formation + Delta-G solvation = -27.337633 kcal Electronic energy + Delta-G solvation = -12354.112211 eV Core-core repulsion = 10122.432794 eV Total energy + Delta-G solvation = -2231.679417 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.28969 -36.86102 -33.89323 -32.47686 -29.19600 -27.97888 -26.64582 -21.93258 -21.73344 -21.18582 -20.49905 -16.84298 -16.19012 -15.76773 -15.10482 -14.63497 -14.25908 -13.91598 -13.35190 -13.01217 -12.87523 -12.61545 -12.22877 -11.89164 -11.48477 -11.38894 -10.94333 -10.74754 -10.57898 -10.38906 -9.86857 -9.81664 -9.11914 -8.79005 -8.40741 -8.05436 -6.06650 -4.04944 3.27406 3.34061 3.35690 3.79177 4.08588 4.39386 4.67632 4.81697 4.93012 5.17558 5.23582 5.24531 5.41503 5.51683 5.61326 5.63520 5.81007 5.85471 5.88199 5.95452 6.07635 6.23118 6.30086 6.64853 7.04870 7.21912 7.51359 7.65397 8.10308 8.73883 9.06938 9.53066 11.06636 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.062072 B = 0.005894 C = 0.005614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.978905 B = 4749.066358 C = 4986.076478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.173 4.173 3 H 0.104 0.896 4 C -0.164 4.164 5 C 0.022 3.978 6 H 0.095 0.905 7 N -0.646 5.646 8 C 0.067 3.933 9 C 0.060 3.940 10 O -0.365 6.365 11 C 0.167 3.833 12 C -0.515 4.515 13 H 0.083 0.917 14 C 0.071 3.929 15 N -0.897 5.897 16 Si 0.876 3.124 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.267 1.267 20 H 0.055 0.945 21 H 0.058 0.942 22 H 0.055 0.945 23 H 0.090 0.910 24 H 0.102 0.898 25 H 0.340 0.660 26 H 0.036 0.964 27 H 0.081 0.919 28 H 0.036 0.964 29 H 0.043 0.957 30 H -0.003 1.003 31 H 0.000 1.000 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.184 2.454 -2.469 18.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.193 4.193 3 H 0.123 0.877 4 C -0.202 4.202 5 C -0.088 4.088 6 H 0.113 0.887 7 N -0.277 5.277 8 C -0.062 4.062 9 C -0.018 4.018 10 O -0.284 6.284 11 C 0.092 3.908 12 C -0.553 4.553 13 H 0.101 0.899 14 C -0.130 4.130 15 N -0.536 5.536 16 Si 0.703 3.297 17 H -0.200 1.200 18 H -0.208 1.208 19 H -0.192 1.192 20 H 0.074 0.926 21 H 0.077 0.923 22 H 0.074 0.926 23 H 0.109 0.891 24 H 0.120 0.880 25 H 0.160 0.840 26 H 0.054 0.946 27 H 0.099 0.901 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.014 0.986 31 H 0.018 0.982 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.591 2.026 -1.831 17.801 hybrid contribution -0.132 0.800 -1.777 1.953 sum -17.723 2.825 -3.609 18.306 Atomic orbital electron populations 1.21350 0.93113 1.01843 1.01452 1.22704 0.94857 0.95181 1.06522 0.87749 1.23309 1.02238 0.99991 0.94701 1.22477 0.91879 1.00493 0.93996 0.88697 1.60061 1.31323 1.06750 1.29589 1.22009 0.94808 0.98132 0.91204 1.22330 0.88348 0.98543 0.92609 1.88030 1.14495 1.87347 1.38492 1.20597 0.81419 0.93531 0.95302 1.20912 0.89326 1.44204 1.00881 0.89896 1.24770 0.96029 0.95210 0.97010 1.69882 1.00880 1.48836 1.33960 0.86849 0.78231 0.79676 0.84956 1.19982 1.20827 1.19186 0.92614 0.92260 0.92620 0.89128 0.88006 0.83986 0.94574 0.90094 0.94620 0.93906 0.98579 0.98201 0.92437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.03 10.19 37.16 0.38 -0.65 16 2 C -0.17 -1.87 6.21 -90.62 -0.56 -2.43 16 3 H 0.10 1.15 8.14 -51.92 -0.42 0.73 16 4 C -0.16 -2.01 10.10 -26.73 -0.27 -2.28 16 5 C 0.02 0.28 5.98 -67.71 -0.40 -0.13 16 6 H 0.10 1.09 7.90 -51.93 -0.41 0.68 16 7 N -0.65 -9.77 6.69 -106.72 -0.71 -10.49 16 8 C 0.07 1.00 5.92 -3.82 -0.02 0.98 16 9 C 0.06 1.07 6.22 37.16 0.23 1.30 16 10 O -0.36 -8.82 10.27 -35.23 -0.36 -9.18 16 11 C 0.17 4.37 4.76 36.01 0.17 4.54 16 12 C -0.52 -15.78 9.99 -34.44 -0.34 -16.12 16 13 H 0.08 2.79 8.06 -52.49 -0.42 2.37 16 14 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 15 N -0.90 -28.22 13.96 55.43 0.77 -27.45 16 16 Si 0.88 21.78 27.47 -169.99 -4.67 17.11 16 17 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 19 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 20 H 0.05 0.45 7.90 -51.93 -0.41 0.04 16 21 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 22 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.09 0.96 8.05 -51.93 -0.42 0.55 16 24 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 25 H 0.34 4.76 8.69 -39.29 -0.34 4.42 16 26 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.00 -0.09 7.57 -51.93 -0.39 -0.48 16 31 H 0.00 0.01 7.20 -51.93 -0.37 -0.37 16 32 H 0.27 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 272.78 15.07 4.11 4.11 Total: -1.00 -32.55 272.78 -7.10 -39.65 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -5.32 Total: -1.01 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: -0.92 Total: -12.74 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: 0.06 Total: -37.93 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: -0.36 Total: -9.18 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -32.55 -7.10 -39.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395459438.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.313 kcal (2) G-P(sol) polarization free energy of solvation -32.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds