Wall clock time and date at job start Mon Mar 30 2020 02:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.55266 * 2 1 4 4 C 1.54990 * 110.61868 * 123.05414 * 2 1 3 5 5 C 1.54810 * 102.09424 * 155.52722 * 4 2 1 6 6 H 1.08997 * 110.60674 * 97.84830 * 5 4 2 7 7 N 1.46898 * 110.48824 * 220.44302 * 5 4 2 8 8 C 1.46906 * 110.99888 * 300.16996 * 7 5 4 9 9 C 1.46902 * 111.00283 * 176.22035 * 7 5 4 10 10 C 1.50699 * 109.47144 * 190.00178 * 9 7 5 11 11 H 1.07997 * 120.00089 * 359.97438 * 10 9 7 12 12 C 1.37884 * 120.00067 * 180.02562 * 10 9 7 13 13 N 1.31517 * 119.99750 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00346 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47285 * 59.99070 * 14 12 10 16 16 H 1.48494 * 109.47400 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.46709 * 299.99808 * 14 12 10 18 18 C 1.54101 * 104.18523 * 339.11513 * 5 4 2 19 19 O 1.43736 * 107.29456 * 357.97217 * 18 5 4 20 20 H 1.09010 * 109.47182 * 181.42279 * 1 2 3 21 21 H 1.09001 * 109.47496 * 301.42282 * 1 2 3 22 22 H 1.09004 * 109.47258 * 61.42869 * 1 2 3 23 23 H 1.08997 * 110.90904 * 37.32434 * 4 2 1 24 24 H 1.09004 * 110.90410 * 273.72175 * 4 2 1 25 25 H 1.09001 * 109.46544 * 60.00058 * 8 7 5 26 26 H 1.09001 * 109.47272 * 179.97438 * 8 7 5 27 27 H 1.09000 * 109.47033 * 300.00113 * 8 7 5 28 28 H 1.09001 * 109.46557 * 309.99495 * 9 7 5 29 29 H 1.08994 * 109.47575 * 69.99497 * 9 7 5 30 30 H 0.96993 * 120.00117 * 180.02562 * 13 12 10 31 31 H 1.09005 * 109.88068 * 117.39726 * 18 5 4 32 32 H 1.09004 * 109.88187 * 238.39776 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0206 0.0000 4 6 2.0758 -0.7912 1.2158 5 6 3.4795 -1.2178 0.7216 6 1 4.2423 -0.5366 1.0986 7 7 3.7733 -2.5963 1.1353 8 6 3.7403 -2.7253 2.5983 9 6 5.0645 -3.0439 0.5964 10 6 5.2200 -4.5247 0.8294 11 1 4.4380 -5.0778 1.3282 12 6 6.3610 -5.1730 0.4065 13 7 7.3135 -4.4993 -0.2005 14 14 6.5541 -7.0083 0.6958 15 1 5.4541 -7.7356 0.0129 16 1 7.8593 -7.4608 0.1510 17 1 6.5019 -7.2877 2.1534 18 6 3.3839 -1.1242 -0.8136 19 8 2.0384 -0.7336 -1.1349 20 1 -0.3634 -1.0274 0.0255 21 1 -0.3634 0.5358 0.8769 22 1 -0.3634 0.4915 -0.9025 23 1 1.4549 -1.6628 1.4233 24 1 2.1509 -0.1508 2.0947 25 1 2.7503 -2.4539 2.9647 26 1 3.9607 -3.7557 2.8773 27 1 4.4850 -2.0621 3.0384 28 1 5.1025 -2.8385 -0.4734 29 1 5.8720 -2.5105 1.0977 30 1 8.1160 -4.9554 -0.4983 31 1 4.0853 -0.3764 -1.1837 32 1 3.6070 -2.0938 -1.2587 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401664956.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:49 Heat of formation + Delta-G solvation = -67.199596 kcal Electronic energy + Delta-G solvation = -13198.888487 eV Core-core repulsion = 10965.480525 eV Total energy + Delta-G solvation = -2233.407962 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.71949 -37.65194 -34.71494 -33.04211 -31.28733 -29.30423 -27.38611 -25.79917 -23.80527 -22.03421 -20.99880 -18.56919 -17.82220 -16.87718 -16.73065 -16.17437 -15.63446 -15.21742 -14.75436 -14.06887 -13.87039 -13.62991 -13.20645 -13.00925 -12.89245 -12.81191 -12.53862 -12.29664 -12.21878 -11.97307 -11.82290 -11.56949 -11.24232 -10.63091 -10.56060 -9.06666 -8.21947 -6.32038 1.40444 1.43896 1.51762 2.39356 2.92235 3.10157 3.21576 3.58532 3.90308 4.16056 4.16336 4.33097 4.48231 4.52767 4.65500 4.72392 4.76130 4.89584 4.92061 5.01159 5.05332 5.15551 5.23332 5.27427 5.33767 5.63525 5.96957 6.06444 6.28577 6.60868 6.83572 7.37526 8.89148 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.059680 B = 0.008124 C = 0.007804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.059499 B = 3445.876841 C = 3587.054612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.064 3.936 3 H 0.082 0.918 4 C -0.131 4.131 5 C 0.044 3.956 6 H 0.043 0.957 7 N -0.541 5.541 8 C 0.040 3.960 9 C 0.203 3.797 10 C -0.527 4.527 11 H 0.063 0.937 12 C 0.002 3.998 13 N -0.935 5.935 14 Si 0.970 3.030 15 H -0.269 1.269 16 H -0.282 1.282 17 H -0.266 1.266 18 C 0.058 3.942 19 O -0.394 6.394 20 H 0.054 0.946 21 H 0.095 0.905 22 H 0.065 0.935 23 H 0.081 0.919 24 H 0.100 0.900 25 H 0.083 0.917 26 H 0.057 0.943 27 H 0.011 0.989 28 H 0.012 0.988 29 H -0.039 1.039 30 H 0.265 0.735 31 H 0.061 0.939 32 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.489 8.201 3.656 13.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.007 3.993 3 H 0.100 0.900 4 C -0.168 4.168 5 C -0.065 4.065 6 H 0.061 0.939 7 N -0.266 5.266 8 C -0.108 4.108 9 C 0.077 3.923 10 C -0.565 4.565 11 H 0.081 0.919 12 C -0.196 4.196 13 N -0.575 5.575 14 Si 0.794 3.206 15 H -0.195 1.195 16 H -0.208 1.208 17 H -0.191 1.191 18 C -0.019 4.019 19 O -0.314 6.314 20 H 0.073 0.927 21 H 0.114 0.886 22 H 0.084 0.916 23 H 0.100 0.900 24 H 0.118 0.882 25 H 0.101 0.899 26 H 0.076 0.924 27 H 0.030 0.970 28 H 0.030 0.970 29 H -0.021 1.021 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.801 7.839 3.191 13.722 hybrid contribution 1.547 -0.385 0.330 1.628 sum -9.254 7.455 3.520 12.394 Atomic orbital electron populations 1.21767 0.91359 1.02876 1.03587 1.23376 0.96645 0.95208 0.84077 0.90044 1.23230 0.93842 1.00785 0.98971 1.23070 0.98094 0.90078 0.95285 0.93903 1.62198 1.33607 1.19545 1.11240 1.22229 1.00452 1.01191 0.86925 1.19463 0.83988 0.94938 0.93929 1.21450 1.02937 0.94170 1.37975 0.91895 1.25921 0.95318 1.03613 0.94778 1.70073 1.08513 1.38196 1.40711 0.85425 0.77351 0.78911 0.78877 1.19453 1.20763 1.19091 1.23112 0.84126 0.99797 0.94852 1.88834 1.27931 1.74221 1.40398 0.92661 0.88584 0.91586 0.89997 0.88184 0.89872 0.92365 0.96995 0.97021 1.02123 0.92627 0.92043 0.91348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.66 71.98 0.70 -2.09 16 2 C 0.06 1.66 3.98 31.27 0.12 1.79 16 3 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 4 C -0.13 -3.59 5.08 31.89 0.16 -3.43 16 5 C 0.04 1.60 2.77 45.91 0.13 1.73 16 6 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 7 N -0.54 -23.82 4.54 -895.78 -4.07 -27.89 16 8 C 0.04 1.53 9.13 127.69 1.17 2.70 16 9 C 0.20 10.98 4.49 85.56 0.38 11.36 16 10 C -0.53 -30.33 8.46 25.60 0.22 -30.12 16 11 H 0.06 3.54 7.12 -2.91 -0.02 3.52 16 12 C 0.00 0.10 5.46 84.66 0.46 0.56 16 13 N -0.93 -56.80 13.29 21.45 0.28 -56.51 16 14 Si 0.97 44.67 29.54 68.60 2.03 46.70 16 15 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 16 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 17 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 18 C 0.06 2.21 6.82 72.35 0.49 2.71 16 19 O -0.39 -13.86 11.22 -148.98 -1.67 -15.53 16 20 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 21 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 22 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 23 H 0.08 2.38 7.53 -2.39 -0.02 2.36 16 24 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 25 H 0.08 2.55 6.87 -2.39 -0.02 2.53 16 26 H 0.06 2.41 6.76 -2.39 -0.02 2.40 16 27 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.01 0.68 6.16 -2.39 -0.01 0.67 16 29 H -0.04 -2.28 8.12 -2.39 -0.02 -2.30 16 30 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 31 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 32 H 0.07 3.05 6.45 -2.38 -0.02 3.04 16 Total: -1.00 -65.39 258.20 1.47 -63.91 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: 1.07 Total: 4.12 kcal Atomic # 6 Polarization: -18.62 SS G_CDS: 3.83 Total: -14.79 kcal Atomic # 7 Polarization: -80.62 SS G_CDS: -3.79 Total: -84.40 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: -1.67 Total: -15.53 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -65.39 1.47 -63.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401664956.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.287 kcal (2) G-P(sol) polarization free energy of solvation -65.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds