Wall clock time and date at job start Mon Mar 30 2020 02:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47620 * 2 1 4 4 C 1.50704 * 109.46969 * 239.99460 * 2 1 3 5 5 H 1.07995 * 120.00293 * 275.00493 * 4 2 1 6 6 C 1.37879 * 119.99366 * 95.00419 * 4 2 1 7 7 N 1.31517 * 119.99798 * 184.86678 * 6 4 2 8 8 Si 1.86794 * 120.00370 * 4.87234 * 6 4 2 9 9 H 1.48499 * 109.47286 * 84.73876 * 8 6 4 10 10 H 1.48501 * 109.47113 * 204.73848 * 8 6 4 11 11 H 1.48504 * 109.46899 * 324.73553 * 8 6 4 12 12 N 1.46906 * 109.47150 * 120.00108 * 2 1 3 13 13 C 1.46901 * 110.99672 * 275.00029 * 12 2 1 14 14 H 1.08999 * 110.83225 * 328.64267 * 13 12 2 15 15 C 1.54999 * 110.90873 * 92.29332 * 13 12 2 16 16 O 1.44386 * 103.48696 * 155.22059 * 15 13 12 17 17 C 1.43741 * 106.97556 * 319.93864 * 16 15 13 18 18 H 1.09008 * 110.00266 * 267.02232 * 17 16 15 19 19 C 1.52996 * 109.87922 * 145.94180 * 17 16 15 20 20 C 1.54101 * 107.29767 * 26.51222 * 17 16 15 21 21 H 1.08999 * 109.46794 * 295.34573 * 1 2 3 22 22 H 1.09003 * 109.46929 * 55.34592 * 1 2 3 23 23 H 1.09001 * 109.47442 * 175.34551 * 1 2 3 24 24 H 0.96996 * 120.00461 * 179.97438 * 7 6 4 25 25 H 1.00897 * 110.99974 * 151.04076 * 12 2 1 26 26 H 1.08998 * 110.61599 * 273.71796 * 15 13 12 27 27 H 1.08995 * 110.61574 * 36.71857 * 15 13 12 28 28 H 1.09001 * 109.46790 * 302.16748 * 19 17 16 29 29 H 1.09001 * 109.47171 * 62.16882 * 19 17 16 30 30 H 1.09000 * 109.47499 * 182.16641 * 19 17 16 31 31 H 1.08990 * 110.49289 * 239.29514 * 20 17 16 32 32 H 1.09002 * 110.48724 * 116.64319 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.1354 -1.7856 -1.2290 6 6 2.3603 0.0120 -2.3580 7 7 2.7069 -0.6133 -3.4619 8 14 2.3125 1.8789 -2.3178 9 1 3.5967 2.3955 -1.7800 10 1 2.1072 2.3986 -3.6937 11 1 1.1954 2.3268 -1.4478 12 7 2.0197 -0.6925 1.1995 13 6 2.0825 0.2226 2.3469 14 1 2.3006 1.2394 2.0203 15 6 0.7670 0.1746 3.1653 16 8 1.1753 0.5976 4.4840 17 6 2.4500 -0.0133 4.7448 18 1 2.3100 -0.9600 5.2667 19 6 3.3129 0.9246 5.5914 20 6 3.1266 -0.2610 3.3826 21 1 -0.3633 0.4399 0.9287 22 1 -0.3633 0.5844 -0.8454 23 1 -0.3634 -1.0243 -0.0834 24 1 2.9372 -0.1051 -4.2553 25 1 2.9173 -1.1206 1.0287 26 1 0.0320 0.8649 2.7512 27 1 0.3693 -0.8398 3.1934 28 1 3.4337 1.8751 5.0718 29 1 2.8284 1.0951 6.5529 30 1 4.2911 0.4717 5.7528 31 1 3.3349 -1.3222 3.2474 32 1 4.0438 0.3223 3.3005 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000402316473.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:56 Heat of formation + Delta-G solvation = -54.874238 kcal Electronic energy + Delta-G solvation = -13200.817210 eV Core-core repulsion = 10967.943716 eV Total energy + Delta-G solvation = -2232.873494 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.35361 -35.78980 -32.64174 -31.98630 -30.49567 -27.39815 -25.89195 -24.89898 -21.32412 -20.56095 -19.81531 -17.09934 -15.91071 -15.63958 -15.16998 -14.80239 -13.83129 -13.64396 -13.30545 -12.73505 -12.45118 -12.34415 -12.06180 -11.66479 -11.27567 -11.04696 -10.89721 -10.87352 -10.67842 -10.31410 -10.14126 -9.79668 -9.46915 -9.03973 -8.64093 -7.56866 -6.16203 -4.17331 3.21166 3.30728 3.32638 4.07696 4.33530 4.78053 4.91126 4.94671 5.18096 5.26571 5.37411 5.55857 5.60717 5.80007 5.88790 6.00686 6.04505 6.19586 6.23378 6.30815 6.37904 6.64179 6.77638 6.85641 7.14399 7.36514 7.57732 7.90916 8.31128 8.59176 8.92711 9.47601 10.96731 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.051902 B = 0.008889 C = 0.008729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.346365 B = 3149.112940 C = 3206.782379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.178 3.822 3 H 0.005 0.995 4 C -0.520 4.520 5 H 0.080 0.920 6 C 0.074 3.926 7 N -0.895 5.895 8 Si 0.875 3.125 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.265 1.265 12 N -0.672 5.672 13 C 0.053 3.947 14 H 0.052 0.948 15 C 0.057 3.943 16 O -0.384 6.384 17 C 0.075 3.925 18 H 0.065 0.935 19 C -0.150 4.150 20 C -0.156 4.156 21 H 0.023 0.977 22 H 0.041 0.959 23 H 0.052 0.948 24 H 0.265 0.735 25 H 0.345 0.655 26 H 0.088 0.912 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.342 2.907 13.368 13.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.070 3.930 3 H 0.023 0.977 4 C -0.559 4.559 5 H 0.098 0.902 6 C -0.129 4.129 7 N -0.532 5.532 8 Si 0.702 3.298 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.190 1.190 12 N -0.306 5.306 13 C -0.059 4.059 14 H 0.070 0.930 15 C -0.020 4.020 16 O -0.303 6.303 17 C 0.017 3.983 18 H 0.082 0.918 19 C -0.207 4.207 20 C -0.194 4.194 21 H 0.042 0.958 22 H 0.060 0.940 23 H 0.071 0.929 24 H 0.075 0.925 25 H 0.164 0.836 26 H 0.106 0.894 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.328 2.822 13.477 13.773 hybrid contribution 0.900 1.407 -0.598 1.774 sum 0.571 4.229 12.879 13.567 Atomic orbital electron populations 1.21921 0.98041 1.00796 0.97931 1.19667 0.92567 0.92441 0.88322 0.97706 1.21071 1.43822 0.95908 0.95091 0.90192 1.25028 0.94339 0.98199 0.95331 1.69897 1.45857 1.35841 1.01653 0.86898 0.79003 0.86545 0.77318 1.20346 1.21310 1.18983 1.60713 1.33100 1.31869 1.04927 1.23124 0.94114 0.96004 0.92622 0.93020 1.23708 0.96836 1.00426 0.80995 1.88825 1.35259 1.71717 1.34533 1.22599 0.84349 0.95808 0.95527 0.91754 1.21935 0.98872 0.99983 0.99936 1.23204 0.99045 1.02782 0.94389 0.95821 0.94004 0.92914 0.92511 0.83553 0.89416 0.91271 0.92056 0.92265 0.91530 0.89858 0.90802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.79 9.33 37.16 0.35 -2.44 16 2 C 0.18 4.15 2.26 -68.86 -0.16 4.00 16 3 H 0.01 0.13 4.59 -51.93 -0.24 -0.11 16 4 C -0.52 -14.29 8.84 -34.44 -0.30 -14.59 16 5 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 6 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 7 N -0.89 -26.86 13.96 55.43 0.77 -26.09 16 8 Si 0.87 21.32 26.99 -169.99 -4.59 16.73 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 11 H -0.27 -6.25 6.83 56.52 0.39 -5.87 16 12 N -0.67 -13.52 6.18 -98.84 -0.61 -14.14 16 13 C 0.05 0.91 3.41 -65.70 -0.22 0.69 16 14 H 0.05 0.96 7.45 -51.93 -0.39 0.58 16 15 C 0.06 0.94 6.47 38.21 0.25 1.19 16 16 O -0.38 -6.21 11.19 -35.23 -0.39 -6.60 16 17 C 0.08 1.01 4.05 -26.16 -0.11 0.91 16 18 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16 19 C -0.15 -1.67 9.36 37.16 0.35 -1.32 16 20 C -0.16 -2.22 6.15 -25.20 -0.15 -2.37 16 21 H 0.02 0.44 5.75 -51.93 -0.30 0.15 16 22 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 23 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 24 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 25 H 0.34 6.94 7.96 -39.29 -0.31 6.63 16 26 H 0.09 1.43 6.78 -51.93 -0.35 1.08 16 27 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.08 1.14 7.93 -51.93 -0.41 0.73 16 32 H 0.07 0.97 7.70 -51.93 -0.40 0.57 16 LS Contribution 256.20 15.07 3.86 3.86 Total: -1.00 -29.16 256.20 -5.99 -35.15 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -4.93 Total: 3.03 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: -0.10 Total: -11.95 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: 0.16 Total: -40.22 kcal Atomic # 8 Polarization: -6.21 SS G_CDS: -0.39 Total: -6.60 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.59 Total: 16.73 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -29.16 -5.99 -35.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402316473.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.726 kcal (2) G-P(sol) polarization free energy of solvation -29.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds