Wall clock time and date at job start Mon Mar 30 2020 02:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 110.41569 * 2 1 4 4 O 1.44427 * 110.36881 * 237.69429 * 2 1 3 5 5 C 1.44426 * 105.27356 * 200.65331 * 4 2 1 6 6 C 1.54475 * 104.80234 * 40.51337 * 5 4 2 7 7 H 1.09002 * 110.51057 * 94.66267 * 6 5 4 8 8 N 1.46893 * 110.51065 * 217.37457 * 6 5 4 9 9 C 1.46904 * 111.00109 * 273.54439 * 8 6 5 10 10 C 1.50699 * 109.46918 * 180.02562 * 9 8 6 11 11 H 1.08000 * 120.00742 * 359.97438 * 10 9 8 12 12 C 1.37879 * 119.99708 * 180.02562 * 10 9 8 13 13 N 1.31524 * 120.00041 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99981 * 179.97438 * 12 10 9 15 15 H 1.48492 * 109.47284 * 0.02562 * 14 12 10 16 16 H 1.48507 * 109.46865 * 120.00117 * 14 12 10 17 17 H 1.48503 * 109.47145 * 239.99971 * 14 12 10 18 18 C 1.54474 * 110.37464 * 122.31258 * 2 1 3 19 19 H 1.08992 * 110.51053 * 261.45362 * 18 2 1 20 20 C 1.53001 * 110.62743 * 24.10572 * 18 2 1 21 21 H 1.09001 * 109.47274 * 180.85615 * 1 2 3 22 22 H 1.09005 * 109.46870 * 300.85352 * 1 2 3 23 23 H 1.09002 * 109.47522 * 60.85203 * 1 2 3 24 24 H 1.08996 * 110.36828 * 159.34352 * 5 4 2 25 25 H 1.08994 * 110.37464 * 281.67938 * 5 4 2 26 26 H 1.00900 * 111.00121 * 37.49919 * 8 6 5 27 27 H 1.09004 * 109.47147 * 299.99972 * 9 8 6 28 28 H 1.08997 * 109.46713 * 59.99889 * 9 8 6 29 29 H 0.97001 * 119.99976 * 180.02562 * 13 12 10 30 30 H 1.09000 * 109.46821 * 174.70836 * 20 18 2 31 31 H 1.09002 * 109.47341 * 294.71245 * 20 18 2 32 32 H 1.09005 * 109.47009 * 54.71172 * 20 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0216 0.0000 4 8 2.0327 -0.7236 -1.1444 5 6 3.3873 -1.0871 -0.7997 6 6 3.3178 -1.5057 0.6856 7 1 3.1955 -2.5853 0.7728 8 7 4.5214 -1.0632 1.4020 9 6 5.5994 -2.0540 1.2824 10 6 6.8146 -1.5667 2.0286 11 1 6.7890 -0.6159 2.5402 12 6 7.9596 -2.3343 2.0574 13 7 7.9910 -3.4920 1.4341 14 14 9.4662 -1.7300 2.9817 15 1 9.1747 -0.4087 3.5934 16 1 9.8155 -2.7025 4.0484 17 1 10.6059 -1.5989 2.0388 18 6 2.0678 -0.7741 1.2238 19 1 2.3430 -0.0840 2.0214 20 6 1.0302 -1.7817 1.7229 21 1 -0.3634 -1.0275 0.0154 22 1 -0.3633 0.5271 0.8823 23 1 -0.3634 0.5005 -0.8975 24 1 3.7240 -1.9221 -1.4139 25 1 4.0524 -0.2323 -0.9223 26 1 4.8245 -0.1579 1.0751 27 1 5.2696 -3.0027 1.7060 28 1 5.8499 -2.1932 0.2308 29 1 8.7965 -4.0322 1.4546 30 1 1.4620 -2.3810 2.5243 31 1 0.1568 -1.2482 2.0981 32 1 0.7325 -2.4336 0.9015 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405657396.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:07 Heat of formation + Delta-G solvation = -78.269643 kcal Electronic energy + Delta-G solvation = -13053.335162 eV Core-core repulsion = 10819.447167 eV Total energy + Delta-G solvation = -2233.887995 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.93175 -36.76972 -34.77366 -34.24998 -31.22981 -28.89063 -27.22648 -25.94882 -23.85387 -22.49413 -20.67498 -18.64407 -17.46920 -17.06144 -16.41956 -16.34650 -15.49352 -15.29191 -14.49596 -14.28940 -14.03808 -13.46151 -13.33293 -13.13893 -12.83570 -12.81885 -12.66201 -12.44181 -12.09906 -11.86659 -11.61591 -11.52985 -11.18327 -10.75911 -10.66370 -9.13940 -8.24399 -6.35837 1.41042 1.41720 1.55611 2.38910 2.86698 3.09311 3.50691 3.72787 3.78191 4.02072 4.10660 4.19268 4.46021 4.57934 4.66137 4.67900 4.85323 4.92564 5.00637 5.00947 5.11975 5.20243 5.25545 5.30139 5.42327 5.59998 5.86809 6.00123 6.39593 6.66813 6.85687 7.35407 8.87420 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.070157 B = 0.007102 C = 0.006974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.010379 B = 3941.624269 C = 4014.153307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.066 3.934 3 H 0.071 0.929 4 O -0.387 6.387 5 C 0.023 3.977 6 C 0.056 3.944 7 H 0.068 0.932 8 N -0.673 5.673 9 C 0.208 3.792 10 C -0.536 4.536 11 H 0.066 0.934 12 C 0.001 3.999 13 N -0.934 5.934 14 Si 0.974 3.026 15 H -0.262 1.262 16 H -0.279 1.279 17 H -0.277 1.277 18 C -0.110 4.110 19 H 0.092 0.908 20 C -0.133 4.133 21 H 0.067 0.933 22 H 0.091 0.909 23 H 0.062 0.938 24 H 0.080 0.920 25 H 0.059 0.941 26 H 0.337 0.663 27 H -0.001 1.001 28 H -0.035 1.035 29 H 0.265 0.735 30 H 0.046 0.954 31 H 0.083 0.917 32 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.574 6.678 -1.244 14.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.009 3.991 3 H 0.089 0.911 4 O -0.306 6.306 5 C -0.056 4.056 6 C -0.055 4.055 7 H 0.086 0.914 8 N -0.304 5.304 9 C 0.080 3.920 10 C -0.574 4.574 11 H 0.084 0.916 12 C -0.197 4.197 13 N -0.575 5.575 14 Si 0.799 3.201 15 H -0.186 1.186 16 H -0.204 1.204 17 H -0.203 1.203 18 C -0.129 4.129 19 H 0.110 0.890 20 C -0.190 4.190 21 H 0.086 0.914 22 H 0.110 0.890 23 H 0.081 0.919 24 H 0.099 0.901 25 H 0.077 0.923 26 H 0.155 0.845 27 H 0.017 0.983 28 H -0.017 1.017 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.102 0.898 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.808 6.248 -0.864 14.276 hybrid contribution 1.545 -0.097 -0.570 1.650 sum -11.262 6.150 -1.434 12.912 Atomic orbital electron populations 1.21891 0.91279 1.03459 1.03266 1.23254 0.96825 0.94977 0.84039 0.91073 1.89062 1.26819 1.75128 1.39632 1.24109 0.84701 0.99638 0.97119 1.23071 0.92049 0.99535 0.90885 0.91351 1.60648 1.05518 1.05801 1.58425 1.19239 0.88710 0.90873 0.93130 1.21577 0.97359 1.05740 1.32758 0.91616 1.25969 1.02364 0.94930 0.96482 1.70101 1.29729 1.13189 1.44446 0.85259 0.78117 0.78643 0.78115 1.18576 1.20420 1.20302 1.22515 0.93932 0.98216 0.98214 0.89018 1.21794 0.98400 0.98363 1.00469 0.91381 0.89011 0.91855 0.90132 0.92264 0.84524 0.98331 1.01731 0.92584 0.93520 0.89792 0.92756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 8.46 71.98 0.61 -2.11 16 2 C 0.07 1.71 3.84 31.09 0.12 1.83 16 3 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 4 O -0.39 -12.38 11.34 -148.98 -1.69 -14.07 16 5 C 0.02 0.79 7.24 72.48 0.52 1.32 16 6 C 0.06 2.03 3.06 45.93 0.14 2.17 16 7 H 0.07 2.70 7.47 -2.39 -0.02 2.68 16 8 N -0.67 -28.82 6.22 -490.34 -3.05 -31.87 16 9 C 0.21 11.15 5.29 85.56 0.45 11.61 16 10 C -0.54 -30.55 9.32 25.60 0.24 -30.31 16 11 H 0.07 3.63 7.81 -2.91 -0.02 3.60 16 12 C 0.00 0.04 5.46 84.65 0.46 0.51 16 13 N -0.93 -56.59 13.29 21.45 0.28 -56.30 16 14 Si 0.97 44.18 29.54 68.60 2.03 46.21 16 15 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 16 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 17 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 18 C -0.11 -3.11 3.41 -9.78 -0.03 -3.14 16 19 H 0.09 2.63 7.97 -2.39 -0.02 2.61 16 20 C -0.13 -3.26 7.72 71.98 0.56 -2.70 16 21 H 0.07 1.32 6.38 -2.39 -0.02 1.30 16 22 H 0.09 1.34 7.93 -2.38 -0.02 1.32 16 23 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 25 H 0.06 1.99 7.61 -2.39 -0.02 1.98 16 26 H 0.34 13.61 8.16 -89.69 -0.73 12.87 16 27 H 0.00 -0.08 8.08 -2.39 -0.02 -0.10 16 28 H -0.03 -2.00 8.12 -2.39 -0.02 -2.02 16 29 H 0.27 15.02 8.31 -92.71 -0.77 14.24 16 30 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.08 1.57 7.12 -2.39 -0.02 1.55 16 32 H 0.05 1.34 7.44 -2.38 -0.02 1.32 16 Total: -1.00 -63.39 260.47 1.00 -62.40 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: 0.36 Total: 14.48 kcal Atomic # 6 Polarization: -23.91 SS G_CDS: 3.07 Total: -20.84 kcal Atomic # 7 Polarization: -85.41 SS G_CDS: -2.76 Total: -88.17 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: -1.69 Total: -14.07 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -63.39 1.00 -62.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405657396.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.873 kcal (2) G-P(sol) polarization free energy of solvation -63.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds