Wall clock time and date at job start Mon Mar 30 2020 02:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09010 * 110.67323 * 2 1 4 4 O 1.44380 * 110.62169 * 237.03893 * 2 1 3 5 5 C 1.43738 * 106.97470 * 201.43413 * 4 2 1 6 6 C 1.54102 * 107.29531 * 26.51609 * 5 4 2 7 7 H 1.09002 * 110.59803 * 239.23678 * 6 5 4 8 8 N 1.46899 * 110.49095 * 116.64239 * 6 5 4 9 9 C 1.46901 * 110.99462 * 90.23430 * 8 6 5 10 10 C 1.50708 * 109.46560 * 180.02562 * 9 8 6 11 11 H 1.08002 * 120.00279 * 359.97438 * 10 9 8 12 12 C 1.37878 * 120.00128 * 180.02562 * 10 9 8 13 13 N 1.31518 * 119.99464 * 359.97438 * 12 10 9 14 14 Si 1.86789 * 120.00362 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47291 * 89.99637 * 14 12 10 16 16 H 1.48503 * 109.47313 * 209.99690 * 14 12 10 17 17 H 1.48501 * 109.47318 * 329.99660 * 14 12 10 18 18 C 1.54810 * 104.18723 * 357.96592 * 6 5 4 19 19 H 1.09001 * 110.90550 * 220.92651 * 18 6 5 20 20 C 1.52991 * 110.93825 * 97.33205 * 18 6 5 21 21 H 1.08999 * 109.47443 * 297.03099 * 1 2 3 22 22 H 1.09000 * 109.47126 * 57.03316 * 1 2 3 23 23 H 1.09000 * 109.46994 * 177.03216 * 1 2 3 24 24 H 1.08999 * 109.88197 * 267.08846 * 5 4 2 25 25 H 1.09001 * 109.87822 * 145.93593 * 5 4 2 26 26 H 1.00895 * 110.99937 * 326.27746 * 8 6 5 27 27 H 1.09000 * 109.47346 * 299.99165 * 9 8 6 28 28 H 1.08997 * 109.47604 * 60.00338 * 9 8 6 29 29 H 0.97007 * 119.99732 * 180.02562 * 13 12 10 30 30 H 1.09001 * 109.47388 * 305.82720 * 20 18 6 31 31 H 1.09000 * 109.47310 * 65.82410 * 20 18 6 32 32 H 1.09003 * 109.47703 * 185.82296 * 20 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0199 0.0000 4 8 2.0385 -0.7352 -1.1338 5 6 3.3840 -1.1252 -0.8118 6 6 3.4795 -1.2166 0.7235 7 1 4.2409 -0.5344 1.1016 8 7 3.7734 -2.5945 1.1393 9 6 5.2223 -2.8206 1.2259 10 6 5.4842 -4.2418 1.6535 11 1 4.6571 -4.9100 1.8425 12 6 6.7798 -4.6886 1.8045 13 7 7.7870 -3.8747 1.5748 14 14 7.1045 -6.4498 2.3352 15 1 7.2086 -7.3175 1.1346 16 1 8.3755 -6.5098 3.1009 17 1 5.9877 -6.9226 3.1922 18 6 2.0758 -0.7893 1.2171 19 1 2.1510 -0.1476 2.0950 20 6 1.2040 -2.0118 1.5105 21 1 -0.3634 0.4670 0.9154 22 1 -0.3633 0.5592 -0.8622 23 1 -0.3633 -1.0263 -0.0532 24 1 4.0854 -0.3780 -1.1830 25 1 3.6046 -2.0962 -1.2553 26 1 3.3400 -3.2602 0.5171 27 1 5.6763 -2.6456 0.2505 28 1 5.6540 -2.1358 1.9557 29 1 8.6986 -4.1891 1.6807 30 1 1.1752 -2.6568 0.6324 31 1 1.6226 -2.5630 2.3526 32 1 0.1929 -1.6866 1.7558 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405657398.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:09 Heat of formation + Delta-G solvation = -54.914352 kcal Electronic energy + Delta-G solvation = -13148.240863 eV Core-core repulsion = 10915.365630 eV Total energy + Delta-G solvation = -2232.875234 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.65085 -35.04429 -33.11391 -32.37938 -29.69891 -27.38245 -25.70569 -24.81077 -21.94840 -20.61271 -19.40888 -16.78476 -16.24600 -15.22796 -14.87489 -14.72002 -14.15885 -13.61796 -12.85185 -12.81383 -12.30113 -12.26521 -11.97096 -11.75111 -11.30574 -11.19630 -10.82473 -10.67429 -10.49907 -10.47210 -10.25143 -9.88165 -9.42012 -9.15840 -8.50719 -7.30477 -6.05598 -4.07734 3.30786 3.36880 3.41418 4.09221 4.41190 4.86460 4.96551 5.18095 5.27192 5.30824 5.43316 5.49056 5.64698 5.78129 5.83535 5.86239 6.04718 6.12307 6.17742 6.22485 6.40713 6.56121 6.79764 7.17826 7.20385 7.38352 7.76023 8.09507 8.34409 8.56387 9.01478 9.57452 11.05483 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.069327 B = 0.007501 C = 0.007141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.785994 B = 3732.013508 C = 3920.105372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.070 3.930 3 H 0.062 0.938 4 O -0.378 6.378 5 C 0.021 3.979 6 C 0.059 3.941 7 H 0.083 0.917 8 N -0.674 5.674 9 C 0.192 3.808 10 C -0.515 4.515 11 H 0.062 0.938 12 C 0.056 3.944 13 N -0.898 5.898 14 Si 0.900 3.100 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.273 1.273 18 C -0.111 4.111 19 H 0.080 0.920 20 C -0.125 4.125 21 H 0.067 0.933 22 H 0.055 0.945 23 H 0.068 0.932 24 H 0.052 0.948 25 H 0.083 0.917 26 H 0.333 0.667 27 H -0.013 1.013 28 H 0.028 0.972 29 H 0.262 0.738 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.112 6.549 -2.022 13.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.012 3.988 3 H 0.080 0.920 4 O -0.298 6.298 5 C -0.058 4.058 6 C -0.053 4.053 7 H 0.101 0.899 8 N -0.304 5.304 9 C 0.065 3.935 10 C -0.554 4.554 11 H 0.081 0.919 12 C -0.146 4.146 13 N -0.537 5.537 14 Si 0.727 3.273 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.198 1.198 18 C -0.130 4.130 19 H 0.098 0.902 20 C -0.182 4.182 21 H 0.086 0.914 22 H 0.074 0.926 23 H 0.087 0.913 24 H 0.071 0.929 25 H 0.101 0.899 26 H 0.151 0.849 27 H 0.005 0.995 28 H 0.046 0.954 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -11.074 6.629 -1.529 12.996 hybrid contribution 0.896 -0.817 -0.542 1.328 sum -10.178 5.812 -2.071 11.902 Atomic orbital electron populations 1.21793 0.93647 1.03009 1.01638 1.23169 0.94868 0.94878 0.85849 0.91966 1.88815 1.28183 1.73687 1.39069 1.24034 0.83822 1.00361 0.97541 1.22939 0.96534 0.94374 0.91495 0.89922 1.60723 1.15459 1.00213 1.53987 1.19626 0.81220 0.97272 0.95374 1.21178 0.92063 0.96374 1.45739 0.91938 1.24992 0.96114 0.97927 0.95539 1.69965 0.98806 1.35407 1.49563 0.86473 0.77660 0.84494 0.78638 1.20709 1.21240 1.19760 1.22688 0.95340 0.97679 0.97325 0.90206 1.21510 0.97180 0.96949 1.02587 0.91412 0.92591 0.91327 0.92950 0.89883 0.84897 0.99547 0.95402 0.92891 0.92889 0.90937 0.93766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 8.65 37.16 0.32 -1.30 16 2 C 0.07 0.97 3.79 -25.68 -0.10 0.87 16 3 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16 4 O -0.38 -6.26 11.21 -35.23 -0.39 -6.66 16 5 C 0.02 0.36 7.37 37.73 0.28 0.64 16 6 C 0.06 1.04 3.26 -66.18 -0.22 0.83 16 7 H 0.08 1.52 7.82 -51.93 -0.41 1.11 16 8 N -0.67 -14.18 4.93 -106.37 -0.52 -14.70 16 9 C 0.19 4.96 5.30 -4.97 -0.03 4.93 16 10 C -0.51 -14.52 9.32 -34.44 -0.32 -14.84 16 11 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 12 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 13 N -0.90 -26.79 13.29 55.43 0.74 -26.05 16 14 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 18 C -0.11 -1.65 3.51 -88.62 -0.31 -1.96 16 19 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 20 C -0.12 -1.83 7.22 37.15 0.27 -1.56 16 21 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.07 0.80 6.73 -51.93 -0.35 0.45 16 24 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.08 1.48 7.58 -51.93 -0.39 1.09 16 26 H 0.33 6.87 7.58 -39.29 -0.30 6.57 16 27 H -0.01 -0.36 8.14 -51.93 -0.42 -0.79 16 28 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 29 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.05 0.82 7.79 -51.93 -0.40 0.41 16 31 H 0.07 1.18 7.74 -51.93 -0.40 0.78 16 32 H 0.04 0.54 6.81 -51.93 -0.35 0.19 16 LS Contribution 259.26 15.07 3.91 3.91 Total: -1.00 -29.53 259.26 -6.61 -36.13 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -5.11 Total: 1.62 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -0.20 Total: -10.91 kcal Atomic # 7 Polarization: -40.96 SS G_CDS: 0.21 Total: -40.75 kcal Atomic # 8 Polarization: -6.26 SS G_CDS: -0.39 Total: -6.66 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -29.53 -6.61 -36.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405657398.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.782 kcal (2) G-P(sol) polarization free energy of solvation -29.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds