Wall clock time and date at job start Mon Mar 30 2020 02:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 110.54127 * 2 1 4 4 C 1.54101 * 110.48965 * 122.61634 * 2 1 3 5 5 H 1.08999 * 109.87453 * 1.28037 * 4 2 1 6 6 C 1.52999 * 110.00692 * 240.20367 * 4 2 1 7 7 O 1.43738 * 107.29607 * 120.70180 * 4 2 1 8 8 C 1.44375 * 106.97784 * 333.49279 * 7 4 2 9 9 C 1.54817 * 110.48784 * 237.38094 * 2 1 3 10 10 H 1.09003 * 110.93409 * 143.99200 * 9 2 1 11 11 N 1.46895 * 110.90599 * 20.40467 * 9 2 1 12 12 C 1.46904 * 111.00014 * 160.84174 * 11 9 2 13 13 C 1.50701 * 109.47195 * 180.02562 * 12 11 9 14 14 H 1.08002 * 119.99761 * 359.97438 * 13 12 11 15 15 C 1.37871 * 119.99694 * 180.27796 * 13 12 11 16 16 N 1.31514 * 120.00482 * 359.71466 * 15 13 12 17 17 Si 1.86801 * 119.99746 * 179.72062 * 15 13 12 18 18 H 1.48504 * 109.47209 * 89.99886 * 17 15 13 19 19 H 1.48501 * 109.47358 * 209.99377 * 17 15 13 20 20 H 1.48496 * 109.47341 * 329.99989 * 17 15 13 21 21 H 1.09000 * 109.47071 * 182.61895 * 1 2 3 22 22 H 1.09000 * 109.47216 * 302.61767 * 1 2 3 23 23 H 1.09000 * 109.46838 * 62.61488 * 1 2 3 24 24 H 1.09001 * 109.46741 * 300.63793 * 6 4 2 25 25 H 1.09006 * 109.47148 * 60.62925 * 6 4 2 26 26 H 1.08989 * 109.47573 * 180.63935 * 6 4 2 27 27 H 1.09003 * 110.61880 * 281.55433 * 8 7 4 28 28 H 1.08999 * 110.75942 * 158.62530 * 8 7 4 29 29 H 1.00903 * 111.00189 * 36.88909 * 11 9 2 30 30 H 1.09000 * 109.47038 * 59.99386 * 12 11 9 31 31 H 1.09007 * 109.46566 * 299.99918 * 12 11 9 32 32 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9125 1.0207 0.0000 4 6 2.0694 -0.7781 1.2159 5 1 1.2391 -1.1778 1.7981 6 6 2.9218 0.1433 2.0907 7 8 2.8754 -1.8556 0.7104 8 6 2.3781 -2.1716 -0.6076 9 6 2.0719 -0.7818 -1.2215 10 1 2.9796 -0.3189 -1.6086 11 7 1.0505 -0.8861 -2.2721 12 6 1.6610 -1.2037 -3.5700 13 6 0.5850 -1.3019 -4.6206 14 1 -0.4489 -1.1446 -4.3510 15 6 0.9200 -1.5988 -5.9247 16 7 2.1789 -1.7908 -6.2529 17 14 -0.4145 -1.7282 -7.2254 18 1 -0.6318 -0.3967 -7.8460 19 1 0.0038 -2.6983 -8.2690 20 1 -1.6765 -2.1925 -6.5954 21 1 -0.3633 -1.0266 0.0470 22 1 -0.3633 0.5539 0.8656 23 1 -0.3633 0.4727 -0.9125 24 1 3.7542 0.5329 1.5046 25 1 2.3107 0.9717 2.4492 26 1 3.3079 -0.4182 2.9413 27 1 1.4698 -2.7707 -0.5418 28 1 3.1372 -2.6908 -1.1927 29 1 0.5014 -0.0414 -2.3278 30 1 2.1891 -2.1547 -3.5002 31 1 2.3641 -0.4168 -3.8430 32 1 2.4145 -2.0000 -7.1703 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405657399.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:10 Heat of formation + Delta-G solvation = -55.700376 kcal Electronic energy + Delta-G solvation = -13090.910255 eV Core-core repulsion = 10858.000936 eV Total energy + Delta-G solvation = -2232.909318 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.57092 -35.17528 -33.09288 -32.20471 -30.00339 -27.64105 -25.78167 -24.04917 -22.14669 -20.92056 -19.45769 -16.60289 -15.65805 -15.45067 -15.17141 -14.73721 -14.35807 -13.49771 -13.01822 -12.67358 -12.45021 -12.23616 -12.13302 -11.79949 -11.41541 -11.23354 -10.88355 -10.66899 -10.43891 -10.43266 -10.20821 -9.85684 -9.38145 -9.17263 -8.51028 -7.38526 -6.05567 -4.08015 3.30262 3.36558 3.40906 4.15692 4.41796 4.77468 4.87864 5.11652 5.24700 5.30509 5.41685 5.54089 5.59242 5.77035 5.83932 5.88449 6.00327 6.11044 6.18433 6.32388 6.35393 6.41999 6.60380 7.11358 7.30125 7.38209 7.75544 8.09458 8.33242 8.55487 9.01053 9.57172 11.05552 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.068315 B = 0.007443 C = 0.007040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.769347 B = 3761.090551 C = 3976.532874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.126 4.126 3 H 0.077 0.923 4 C 0.078 3.922 5 H 0.065 0.935 6 C -0.149 4.149 7 O -0.383 6.383 8 C 0.060 3.940 9 C 0.057 3.943 10 H 0.049 0.951 11 N -0.676 5.676 12 C 0.192 3.808 13 C -0.515 4.515 14 H 0.062 0.938 15 C 0.056 3.944 16 N -0.897 5.897 17 Si 0.899 3.101 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.273 1.273 21 H 0.063 0.937 22 H 0.046 0.954 23 H 0.065 0.935 24 H 0.060 0.940 25 H 0.065 0.935 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.088 0.912 29 H 0.333 0.667 30 H 0.029 0.971 31 H -0.013 1.013 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.025 3.701 12.514 13.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.145 4.145 3 H 0.095 0.905 4 C 0.020 3.980 5 H 0.083 0.917 6 C -0.207 4.207 7 O -0.302 6.302 8 C -0.017 4.017 9 C -0.054 4.054 10 H 0.067 0.933 11 N -0.310 5.310 12 C 0.065 3.935 13 C -0.554 4.554 14 H 0.081 0.919 15 C -0.146 4.146 16 N -0.537 5.537 17 Si 0.727 3.273 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.198 1.198 21 H 0.082 0.918 22 H 0.065 0.935 23 H 0.084 0.916 24 H 0.079 0.921 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.106 0.894 29 H 0.153 0.847 30 H 0.047 0.953 31 H 0.004 0.996 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.882 2.896 12.610 12.968 hybrid contribution -0.294 0.833 -1.234 1.518 sum -1.176 3.729 11.376 12.029 Atomic orbital electron populations 1.21664 0.93582 1.02609 1.01156 1.22689 0.97417 0.99575 0.94843 0.90450 1.22729 0.93106 0.87632 0.94508 0.91701 1.21921 1.00324 0.98764 0.99660 1.88815 1.56857 1.52494 1.32025 1.23545 0.99531 0.96749 0.81908 1.23003 0.95015 0.94988 0.92439 0.93299 1.60844 1.22799 1.40216 1.07095 1.19631 0.94399 0.95717 0.83752 1.21167 0.93845 1.47913 0.92472 0.91945 1.24992 0.95549 0.95356 0.98661 1.69960 1.16468 1.48391 1.18850 0.86477 0.81901 0.77792 0.81109 1.20729 1.21216 1.19757 0.91758 0.93498 0.91637 0.92069 0.91629 0.92249 0.91305 0.89365 0.84730 0.95337 0.99552 0.92865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.79 8.24 37.16 0.31 -1.49 16 2 C -0.13 -1.84 3.20 -89.09 -0.28 -2.12 16 3 H 0.08 1.05 7.70 -51.93 -0.40 0.65 16 4 C 0.08 1.10 3.72 -26.16 -0.10 1.00 16 5 H 0.07 0.86 7.69 -51.93 -0.40 0.46 16 6 C -0.15 -1.72 9.37 37.16 0.35 -1.37 16 7 O -0.38 -6.51 11.19 -35.23 -0.39 -6.90 16 8 C 0.06 1.06 7.36 38.21 0.28 1.35 16 9 C 0.06 1.03 3.29 -65.71 -0.22 0.82 16 10 H 0.05 0.95 7.91 -51.93 -0.41 0.54 16 11 N -0.68 -14.19 5.61 -105.87 -0.59 -14.78 16 12 C 0.19 4.99 5.30 -4.97 -0.03 4.96 16 13 C -0.52 -14.51 9.32 -34.44 -0.32 -14.83 16 14 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 16 N -0.90 -26.83 13.29 55.43 0.74 -26.09 16 17 Si 0.90 21.61 29.54 -169.99 -5.02 16.58 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 21 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 22 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.06 0.92 6.33 -51.93 -0.33 0.59 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.64 8.14 -51.94 -0.42 0.22 16 27 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 29 H 0.33 6.64 6.53 -39.29 -0.26 6.38 16 30 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 31 H -0.01 -0.37 8.09 -51.93 -0.42 -0.79 16 32 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 261.70 15.07 3.94 3.94 Total: -1.00 -29.65 261.70 -6.58 -36.23 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -5.14 Total: 1.20 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: -0.11 Total: -10.18 kcal Atomic # 7 Polarization: -41.01 SS G_CDS: 0.14 Total: -40.87 kcal Atomic # 8 Polarization: -6.51 SS G_CDS: -0.39 Total: -6.90 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -29.65 -6.58 -36.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405657399.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.470 kcal (2) G-P(sol) polarization free energy of solvation -29.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds