Wall clock time and date at job start Mon Mar 30 2020 02:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 110.54127 * 2 1 4 4 C 1.54101 * 110.48965 * 122.61634 * 2 1 3 5 5 H 1.08999 * 109.87453 * 1.28037 * 4 2 1 6 6 C 1.52999 * 110.00692 * 240.20367 * 4 2 1 7 7 O 1.43738 * 107.29607 * 120.70180 * 4 2 1 8 8 C 1.44375 * 106.97784 * 333.49279 * 7 4 2 9 9 C 1.54817 * 110.48784 * 237.38094 * 2 1 3 10 10 H 1.09003 * 110.93409 * 143.99200 * 9 2 1 11 11 N 1.46895 * 110.90599 * 20.40467 * 9 2 1 12 12 C 1.46904 * 111.00014 * 160.84174 * 11 9 2 13 13 C 1.50701 * 109.47195 * 180.02562 * 12 11 9 14 14 H 1.08002 * 119.99761 * 359.97438 * 13 12 11 15 15 C 1.37871 * 119.99694 * 180.27796 * 13 12 11 16 16 N 1.31514 * 120.00482 * 359.71466 * 15 13 12 17 17 Si 1.86801 * 119.99746 * 179.72062 * 15 13 12 18 18 H 1.48504 * 109.47209 * 89.99886 * 17 15 13 19 19 H 1.48501 * 109.47358 * 209.99377 * 17 15 13 20 20 H 1.48496 * 109.47341 * 329.99989 * 17 15 13 21 21 H 1.09000 * 109.47071 * 182.61895 * 1 2 3 22 22 H 1.09000 * 109.47216 * 302.61767 * 1 2 3 23 23 H 1.09000 * 109.46838 * 62.61488 * 1 2 3 24 24 H 1.09001 * 109.46741 * 300.63793 * 6 4 2 25 25 H 1.09006 * 109.47148 * 60.62925 * 6 4 2 26 26 H 1.08989 * 109.47573 * 180.63935 * 6 4 2 27 27 H 1.09003 * 110.61880 * 281.55433 * 8 7 4 28 28 H 1.08999 * 110.75942 * 158.62530 * 8 7 4 29 29 H 1.00903 * 111.00189 * 36.88909 * 11 9 2 30 30 H 1.09000 * 109.47038 * 59.99386 * 12 11 9 31 31 H 1.09007 * 109.46566 * 299.99918 * 12 11 9 32 32 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9125 1.0207 0.0000 4 6 2.0694 -0.7781 1.2159 5 1 1.2391 -1.1778 1.7981 6 6 2.9218 0.1433 2.0907 7 8 2.8754 -1.8556 0.7104 8 6 2.3781 -2.1716 -0.6076 9 6 2.0719 -0.7818 -1.2215 10 1 2.9796 -0.3189 -1.6086 11 7 1.0505 -0.8861 -2.2721 12 6 1.6610 -1.2037 -3.5700 13 6 0.5850 -1.3019 -4.6206 14 1 -0.4489 -1.1446 -4.3510 15 6 0.9200 -1.5988 -5.9247 16 7 2.1789 -1.7908 -6.2529 17 14 -0.4145 -1.7282 -7.2254 18 1 -0.6318 -0.3967 -7.8460 19 1 0.0038 -2.6983 -8.2690 20 1 -1.6765 -2.1925 -6.5954 21 1 -0.3633 -1.0266 0.0470 22 1 -0.3633 0.5539 0.8656 23 1 -0.3633 0.4727 -0.9125 24 1 3.7542 0.5329 1.5046 25 1 2.3107 0.9717 2.4492 26 1 3.3079 -0.4182 2.9413 27 1 1.4698 -2.7707 -0.5418 28 1 3.1372 -2.6908 -1.1927 29 1 0.5014 -0.0414 -2.3278 30 1 2.1891 -2.1547 -3.5002 31 1 2.3641 -0.4168 -3.8430 32 1 2.4145 -2.0000 -7.1703 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405657399.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:10 Heat of formation + Delta-G solvation = -76.185426 kcal Electronic energy + Delta-G solvation = -13091.798553 eV Core-core repulsion = 10858.000936 eV Total energy + Delta-G solvation = -2233.797617 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.89500 -36.87948 -34.84634 -33.76401 -31.40897 -29.08579 -27.68073 -25.23639 -24.05704 -22.29678 -20.85981 -18.62967 -17.15916 -16.86220 -16.59422 -16.44243 -16.03172 -14.94674 -14.53261 -14.18390 -14.00961 -13.71104 -13.35525 -13.18657 -12.83608 -12.74718 -12.66863 -12.34475 -12.06772 -11.79972 -11.62813 -11.46806 -11.16791 -10.71652 -10.63509 -9.20398 -8.23662 -6.35268 1.41431 1.43216 1.55011 2.39251 2.87578 3.10079 3.48115 3.55790 3.78709 3.99041 4.22914 4.34693 4.43689 4.55318 4.67354 4.72219 4.82211 4.90732 5.02080 5.06628 5.10266 5.18980 5.23836 5.32129 5.48500 5.60202 5.92568 6.01898 6.40448 6.68112 6.86678 7.36058 8.88158 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.068315 B = 0.007443 C = 0.007040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.769347 B = 3761.090551 C = 3976.532874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.117 4.117 3 H 0.093 0.907 4 C 0.072 3.928 5 H 0.079 0.921 6 C -0.146 4.146 7 O -0.395 6.395 8 C 0.064 3.936 9 C 0.049 3.951 10 H 0.032 0.968 11 N -0.667 5.667 12 C 0.207 3.793 13 C -0.535 4.535 14 H 0.067 0.933 15 C 0.000 4.000 16 N -0.935 5.935 17 Si 0.975 3.025 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.263 1.263 21 H 0.052 0.948 22 H 0.078 0.922 23 H 0.057 0.943 24 H 0.053 0.947 25 H 0.092 0.908 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.341 0.659 30 H 0.000 1.000 31 H -0.041 1.041 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.500 4.517 13.428 14.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.136 4.136 3 H 0.111 0.889 4 C 0.014 3.986 5 H 0.097 0.903 6 C -0.203 4.203 7 O -0.314 6.314 8 C -0.013 4.013 9 C -0.062 4.062 10 H 0.050 0.950 11 N -0.301 5.301 12 C 0.079 3.921 13 C -0.573 4.573 14 H 0.086 0.914 15 C -0.198 4.198 16 N -0.576 5.576 17 Si 0.799 3.201 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.187 1.187 21 H 0.071 0.929 22 H 0.097 0.903 23 H 0.076 0.924 24 H 0.072 0.928 25 H 0.111 0.889 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.162 0.838 30 H 0.018 0.982 31 H -0.024 1.024 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.364 3.726 13.555 14.255 hybrid contribution 0.205 0.589 -1.443 1.572 sum -2.159 4.315 12.112 13.038 Atomic orbital electron populations 1.21647 0.92454 1.02335 1.02256 1.22692 0.98273 0.99785 0.92819 0.88899 1.23012 0.93829 0.87232 0.94512 0.90315 1.21934 1.00134 0.99013 0.99183 1.88807 1.57618 1.53764 1.31192 1.23369 0.98961 0.96396 0.82564 1.23064 0.93904 0.96151 0.93061 0.95036 1.60705 1.23210 1.40827 1.05342 1.19268 0.93477 0.93355 0.85995 1.21536 0.94376 1.48047 0.93369 0.91446 1.25977 0.97998 0.94651 1.01164 1.70096 1.18756 1.49117 1.19585 0.85301 0.78818 0.78136 0.77842 1.19640 1.20865 1.18735 0.92924 0.90307 0.92370 0.92783 0.88945 0.91553 0.91566 0.90714 0.83828 0.98166 1.02384 0.92613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.18 8.24 71.98 0.59 -2.59 16 2 C -0.12 -3.19 3.20 -9.80 -0.03 -3.22 16 3 H 0.09 2.27 7.70 -2.38 -0.02 2.26 16 4 C 0.07 1.85 3.72 30.97 0.12 1.97 16 5 H 0.08 1.85 7.69 -2.39 -0.02 1.83 16 6 C -0.15 -2.92 9.37 71.98 0.67 -2.25 16 7 O -0.39 -13.12 11.19 -148.98 -1.67 -14.79 16 8 C 0.06 2.33 7.36 72.66 0.53 2.87 16 9 C 0.05 1.81 3.29 46.22 0.15 1.96 16 10 H 0.03 1.27 7.91 -2.39 -0.02 1.25 16 11 N -0.67 -28.31 5.61 -488.85 -2.74 -31.05 16 12 C 0.21 11.13 5.30 85.56 0.45 11.59 16 13 C -0.54 -30.41 9.32 25.60 0.24 -30.17 16 14 H 0.07 3.68 7.81 -2.91 -0.02 3.66 16 15 C 0.00 0.02 5.46 84.65 0.46 0.48 16 16 N -0.94 -56.88 13.29 21.45 0.28 -56.59 16 17 Si 0.97 44.12 29.54 68.60 2.03 46.15 16 18 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 19 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 20 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 21 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 22 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 23 H 0.06 1.52 6.33 -2.39 -0.02 1.50 16 24 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 26 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 28 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 29 H 0.34 13.51 6.53 -89.69 -0.59 12.92 16 30 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 31 H -0.04 -2.42 8.09 -2.38 -0.02 -2.44 16 32 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -63.77 261.70 1.59 -62.18 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: 0.50 Total: 13.47 kcal Atomic # 6 Polarization: -22.56 SS G_CDS: 3.19 Total: -19.37 kcal Atomic # 7 Polarization: -85.19 SS G_CDS: -2.46 Total: -87.64 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: -1.67 Total: -14.79 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -63.77 1.59 -62.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405657399.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.007 kcal (2) G-P(sol) polarization free energy of solvation -63.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds