Wall clock time and date at job start Mon Mar 30 2020 02:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.52216 * 2 1 4 4 C 1.53192 * 109.49842 * 239.91631 * 2 1 3 5 5 N 1.46927 * 108.77354 * 185.41308 * 4 2 1 6 6 C 1.36942 * 120.62705 * 233.61151 * 5 4 2 7 7 H 1.07999 * 120.00429 * 27.96739 * 6 5 4 8 8 C 1.38810 * 119.99729 * 207.96886 * 6 5 4 9 9 N 1.31618 * 120.00116 * 17.50046 * 8 6 5 10 10 Si 1.86799 * 120.00032 * 197.50209 * 8 6 5 11 11 H 1.48498 * 109.47048 * 94.06694 * 10 8 6 12 12 H 1.48498 * 109.47272 * 214.06482 * 10 8 6 13 13 H 1.48502 * 109.46978 * 334.06432 * 10 8 6 14 14 C 1.46933 * 118.76628 * 53.58930 * 5 4 2 15 15 C 1.53195 * 108.77087 * 306.44278 * 14 5 4 16 16 H 1.08999 * 109.49603 * 294.61950 * 15 14 5 17 17 C 1.52995 * 109.49640 * 174.55329 * 15 14 5 18 18 C 1.53041 * 109.49640 * 120.07782 * 2 1 3 19 19 H 1.08995 * 109.45900 * 61.29816 * 18 2 1 20 20 O 1.42905 * 109.46189 * 301.33980 * 18 2 1 21 21 H 1.09001 * 109.47493 * 299.91940 * 1 2 3 22 22 H 1.09002 * 109.46843 * 59.92416 * 1 2 3 23 23 H 1.09006 * 109.47094 * 179.97438 * 1 2 3 24 24 H 1.08991 * 109.58818 * 305.20171 * 4 2 1 25 25 H 1.09001 * 109.58309 * 65.62766 * 4 2 1 26 26 H 0.96997 * 120.00537 * 179.97438 * 9 8 6 27 27 H 1.09003 * 109.61350 * 186.64472 * 14 5 4 28 28 H 1.08992 * 109.56111 * 66.21629 * 14 5 4 29 29 H 1.09002 * 109.47475 * 300.06714 * 17 15 14 30 30 H 1.08997 * 109.47476 * 60.06603 * 17 15 14 31 31 H 1.08996 * 109.47021 * 180.02562 * 17 15 14 32 32 H 0.96691 * 113.99981 * 59.92954 * 20 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0413 -0.7239 -1.2495 5 7 3.5046 -0.8291 -1.1695 6 6 4.2936 -0.3788 -2.1942 7 1 3.9486 0.4242 -2.8286 8 6 5.5367 -0.9546 -2.4175 9 7 5.8212 -2.1292 -1.8962 10 14 6.8060 -0.0624 -3.4579 11 1 7.7025 0.7271 -2.5758 12 1 7.6080 -1.0540 -4.2186 13 1 6.1165 0.8489 -4.4063 14 6 4.1060 -1.4262 0.0309 15 6 3.5708 -0.6949 1.2661 16 1 3.9159 0.3390 1.2547 17 6 4.0797 -1.3892 2.5309 18 6 2.0408 -0.7230 1.2484 19 1 1.6967 -1.7572 1.2354 20 8 1.5391 -0.0693 2.4159 21 1 -0.3634 0.5126 0.8907 22 1 -0.3633 0.5150 -0.8893 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6053 -1.7216 -1.2980 25 1 1.7638 -0.1580 -2.1388 26 1 6.6898 -2.5318 -2.0525 27 1 5.1903 -1.3234 -0.0133 28 1 3.8388 -2.4814 0.0866 29 1 3.7345 -2.4230 2.5419 30 1 5.1695 -1.3699 2.5425 31 1 3.6984 -0.8688 3.4094 32 1 0.5739 -0.0494 2.4714 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595747719.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:25 Heat of formation + Delta-G solvation = -47.050566 kcal Electronic energy + Delta-G solvation = -13661.317293 eV Core-core repulsion = 11428.783059 eV Total energy + Delta-G solvation = -2232.534234 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.68165 -35.39496 -32.95643 -32.62523 -30.26550 -26.13968 -25.69781 -24.82731 -21.41403 -20.15737 -19.10848 -16.89515 -16.69142 -14.82324 -14.55863 -14.07758 -13.85747 -13.03610 -12.93278 -12.70553 -12.03475 -11.94261 -11.79586 -11.29811 -11.06740 -11.01271 -10.70090 -10.65082 -10.42455 -9.98804 -9.91802 -9.71944 -9.42499 -9.13084 -8.45680 -6.68512 -5.79082 -3.21435 3.38612 3.45631 3.46886 4.49554 4.76408 5.19521 5.33217 5.37908 5.50120 5.62696 5.78641 5.91783 6.00566 6.11409 6.26076 6.26505 6.34377 6.49264 6.57837 6.63997 6.75439 6.87874 6.92281 7.01909 7.39505 7.65225 7.79945 8.07416 8.44989 9.20903 9.84219 10.40985 11.29746 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.043767 B = 0.011666 C = 0.010005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.594804 B = 2399.472514 C = 2797.972404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.142 4.142 3 H 0.073 0.927 4 C 0.154 3.846 5 N -0.594 5.594 6 C -0.254 4.254 7 H 0.066 0.934 8 C 0.003 3.997 9 N -0.902 5.902 10 Si 0.902 3.098 11 H -0.287 1.287 12 H -0.291 1.291 13 H -0.278 1.278 14 C 0.179 3.821 15 C -0.108 4.108 16 H 0.067 0.933 17 C -0.135 4.135 18 C 0.121 3.879 19 H 0.045 0.955 20 O -0.572 6.572 21 H 0.048 0.952 22 H 0.056 0.944 23 H 0.051 0.949 24 H 0.018 0.982 25 H 0.055 0.945 26 H 0.254 0.746 27 H 0.091 0.909 28 H 0.019 0.981 29 H 0.046 0.954 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.363 0.637 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.484 2.168 5.517 9.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 H 0.091 0.909 4 C 0.027 3.973 5 N -0.316 5.316 6 C -0.384 4.384 7 H 0.084 0.916 8 C -0.196 4.196 9 N -0.547 5.547 10 Si 0.732 3.268 11 H -0.214 1.214 12 H -0.218 1.218 13 H -0.204 1.204 14 C 0.053 3.947 15 C -0.128 4.128 16 H 0.085 0.915 17 C -0.193 4.193 18 C 0.063 3.937 19 H 0.063 0.937 20 O -0.378 6.378 21 H 0.067 0.933 22 H 0.075 0.925 23 H 0.070 0.930 24 H 0.036 0.964 25 H 0.073 0.927 26 H 0.064 0.936 27 H 0.110 0.890 28 H 0.037 0.963 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -6.674 2.135 5.570 8.951 hybrid contribution 0.065 0.315 -0.683 0.755 sum -6.609 2.450 4.886 8.577 Atomic orbital electron populations 1.21795 0.96240 1.01249 1.01220 1.22358 0.94371 1.01443 0.98056 0.90892 1.20902 0.85863 0.96402 0.94149 1.44098 0.99387 1.71535 1.16554 1.19210 0.98442 1.12094 1.08611 0.91636 1.25042 0.99917 0.95321 0.99297 1.70034 1.22062 1.14284 1.48278 0.86271 0.81726 0.78942 0.79823 1.21420 1.21756 1.20372 1.20856 0.99438 0.92827 0.81591 1.21902 0.92078 1.01339 0.97479 0.91485 1.21638 1.00365 0.99776 0.97494 1.21851 0.95051 0.93687 0.83131 0.93732 1.86523 1.25045 1.81423 1.44769 0.93286 0.92533 0.92979 0.96440 0.92660 0.93592 0.89043 0.96279 0.93506 0.93111 0.93015 0.79024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 8.86 37.16 0.33 -1.68 16 2 C -0.14 -2.54 2.62 -90.50 -0.24 -2.77 16 3 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 4 C 0.15 3.27 5.80 -3.71 -0.02 3.25 16 5 N -0.59 -15.19 2.99 -172.32 -0.52 -15.71 16 6 C -0.25 -7.08 9.58 -15.06 -0.14 -7.22 16 7 H 0.07 1.79 7.89 -52.49 -0.41 1.38 16 8 C 0.00 0.08 4.90 -17.43 -0.09 0.00 16 9 N -0.90 -26.38 11.22 55.49 0.62 -25.75 16 10 Si 0.90 21.88 29.59 -169.99 -5.03 16.85 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 14 C 0.18 4.37 4.59 -3.71 -0.02 4.35 16 15 C -0.11 -2.21 2.62 -90.50 -0.24 -2.45 16 16 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 17 C -0.13 -2.43 9.04 37.15 0.34 -2.09 16 18 C 0.12 2.20 2.40 -26.69 -0.06 2.14 16 19 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 20 O -0.57 -9.40 12.54 -35.23 -0.44 -9.84 16 21 H 0.05 0.57 6.76 -51.93 -0.35 0.22 16 22 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.05 1.16 7.93 -51.93 -0.41 0.74 16 26 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 27 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 28 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.05 0.88 7.65 -51.93 -0.40 0.48 16 32 H 0.36 4.44 7.33 45.56 0.33 4.78 16 LS Contribution 253.29 15.07 3.82 3.82 Total: -1.00 -29.92 253.29 -6.18 -36.11 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -4.50 Total: 1.01 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: -0.14 Total: -6.48 kcal Atomic # 7 Polarization: -41.57 SS G_CDS: 0.11 Total: -41.46 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: -0.44 Total: -9.84 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.85 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -29.92 -6.18 -36.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595747719.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.943 kcal (2) G-P(sol) polarization free energy of solvation -29.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds