Wall clock time and date at job start Mon Mar 30 2020 02:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.52216 * 2 1 4 4 C 1.53192 * 109.49842 * 239.91631 * 2 1 3 5 5 N 1.46927 * 108.77354 * 185.41308 * 4 2 1 6 6 C 1.36942 * 120.62705 * 233.61151 * 5 4 2 7 7 H 1.07999 * 120.00429 * 27.96739 * 6 5 4 8 8 C 1.38810 * 119.99729 * 207.96886 * 6 5 4 9 9 N 1.31618 * 120.00116 * 17.50046 * 8 6 5 10 10 Si 1.86799 * 120.00032 * 197.50209 * 8 6 5 11 11 H 1.48498 * 109.47048 * 94.06694 * 10 8 6 12 12 H 1.48498 * 109.47272 * 214.06482 * 10 8 6 13 13 H 1.48502 * 109.46978 * 334.06432 * 10 8 6 14 14 C 1.46933 * 118.76628 * 53.58930 * 5 4 2 15 15 C 1.53195 * 108.77087 * 306.44278 * 14 5 4 16 16 H 1.08999 * 109.49603 * 294.61950 * 15 14 5 17 17 C 1.52995 * 109.49640 * 174.55329 * 15 14 5 18 18 C 1.53041 * 109.49640 * 120.07782 * 2 1 3 19 19 H 1.08995 * 109.45900 * 61.29816 * 18 2 1 20 20 O 1.42905 * 109.46189 * 301.33980 * 18 2 1 21 21 H 1.09001 * 109.47493 * 299.91940 * 1 2 3 22 22 H 1.09002 * 109.46843 * 59.92416 * 1 2 3 23 23 H 1.09006 * 109.47094 * 179.97438 * 1 2 3 24 24 H 1.08991 * 109.58818 * 305.20171 * 4 2 1 25 25 H 1.09001 * 109.58309 * 65.62766 * 4 2 1 26 26 H 0.96997 * 120.00537 * 179.97438 * 9 8 6 27 27 H 1.09003 * 109.61350 * 186.64472 * 14 5 4 28 28 H 1.08992 * 109.56111 * 66.21629 * 14 5 4 29 29 H 1.09002 * 109.47475 * 300.06714 * 17 15 14 30 30 H 1.08997 * 109.47476 * 60.06603 * 17 15 14 31 31 H 1.08996 * 109.47021 * 180.02562 * 17 15 14 32 32 H 0.96691 * 113.99981 * 59.92954 * 20 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0413 -0.7239 -1.2495 5 7 3.5046 -0.8291 -1.1695 6 6 4.2936 -0.3788 -2.1942 7 1 3.9486 0.4242 -2.8286 8 6 5.5367 -0.9546 -2.4175 9 7 5.8212 -2.1292 -1.8962 10 14 6.8060 -0.0624 -3.4579 11 1 7.7025 0.7271 -2.5758 12 1 7.6080 -1.0540 -4.2186 13 1 6.1165 0.8489 -4.4063 14 6 4.1060 -1.4262 0.0309 15 6 3.5708 -0.6949 1.2661 16 1 3.9159 0.3390 1.2547 17 6 4.0797 -1.3892 2.5309 18 6 2.0408 -0.7230 1.2484 19 1 1.6967 -1.7572 1.2354 20 8 1.5391 -0.0693 2.4159 21 1 -0.3634 0.5126 0.8907 22 1 -0.3633 0.5150 -0.8893 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6053 -1.7216 -1.2980 25 1 1.7638 -0.1580 -2.1388 26 1 6.6898 -2.5318 -2.0525 27 1 5.1903 -1.3234 -0.0133 28 1 3.8388 -2.4814 0.0866 29 1 3.7345 -2.4230 2.5419 30 1 5.1695 -1.3699 2.5425 31 1 3.6984 -0.8688 3.4094 32 1 0.5739 -0.0494 2.4714 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595747719.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:25 Heat of formation + Delta-G solvation = -67.615753 kcal Electronic energy + Delta-G solvation = -13662.209067 eV Core-core repulsion = 11428.783059 eV Total energy + Delta-G solvation = -2233.426008 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.24679 -37.05698 -34.54034 -34.37137 -32.12156 -27.70526 -27.35228 -26.62701 -23.25574 -21.68310 -20.75643 -18.73186 -18.28240 -16.78877 -16.06286 -15.76903 -15.61290 -14.77238 -14.46209 -14.28577 -13.64114 -13.35614 -13.07627 -13.03306 -12.91642 -12.64249 -12.46026 -12.25188 -12.19737 -11.82126 -11.60980 -11.52471 -11.05632 -10.60622 -10.52432 -8.73202 -7.90949 -5.36488 1.44867 1.46806 1.55804 2.48868 3.21762 3.42234 3.63383 3.84322 4.00779 4.16156 4.24956 4.52254 4.64272 4.66247 4.77468 4.85079 4.88317 4.95260 5.08639 5.10059 5.26894 5.31925 5.41497 5.44521 5.51995 5.62436 5.72499 6.35818 6.95120 7.11093 7.81699 8.33800 9.15973 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.043767 B = 0.011666 C = 0.010005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.594804 B = 2399.472514 C = 2797.972404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.132 4.132 3 H 0.056 0.944 4 C 0.149 3.851 5 N -0.615 5.615 6 C -0.268 4.268 7 H 0.065 0.935 8 C -0.049 4.049 9 N -0.933 5.933 10 Si 0.967 3.033 11 H -0.286 1.286 12 H -0.292 1.292 13 H -0.267 1.267 14 C 0.189 3.811 15 C -0.104 4.104 16 H 0.048 0.952 17 C -0.127 4.127 18 C 0.131 3.869 19 H 0.049 0.951 20 O -0.574 6.574 21 H 0.076 0.924 22 H 0.063 0.937 23 H 0.061 0.939 24 H 0.018 0.982 25 H 0.054 0.946 26 H 0.251 0.749 27 H 0.056 0.944 28 H 0.000 1.000 29 H 0.053 0.947 30 H 0.047 0.953 31 H 0.066 0.934 32 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.881 2.945 6.174 11.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.153 4.153 3 H 0.075 0.925 4 C 0.023 3.977 5 N -0.337 5.337 6 C -0.398 4.398 7 H 0.083 0.917 8 C -0.244 4.244 9 N -0.579 5.579 10 Si 0.795 3.205 11 H -0.213 1.213 12 H -0.219 1.219 13 H -0.192 1.192 14 C 0.063 3.937 15 C -0.125 4.125 16 H 0.067 0.933 17 C -0.185 4.185 18 C 0.072 3.928 19 H 0.067 0.933 20 O -0.382 6.382 21 H 0.095 0.905 22 H 0.082 0.918 23 H 0.081 0.919 24 H 0.036 0.964 25 H 0.072 0.928 26 H 0.060 0.940 27 H 0.075 0.925 28 H 0.018 0.982 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -8.121 2.928 6.238 10.651 hybrid contribution 0.445 0.072 -0.878 0.987 sum -7.676 3.000 5.360 9.831 Atomic orbital electron populations 1.21747 0.92406 1.02528 1.03026 1.22203 0.97467 0.99617 0.95987 0.92542 1.21078 0.83585 0.96836 0.96177 1.44387 1.01192 1.71657 1.16507 1.19527 0.99241 1.12023 1.09012 0.91683 1.25805 1.01665 0.95999 1.00950 1.70177 1.22234 1.15653 1.49854 0.85258 0.79118 0.77766 0.78359 1.21317 1.21879 1.19187 1.20594 0.97545 0.92280 0.83255 1.21709 0.94395 0.99748 0.96607 0.93304 1.21576 1.00261 1.00068 0.96620 1.21551 0.93153 0.94139 0.83932 0.93282 1.86469 1.27293 1.81036 1.43394 0.90506 0.91817 0.91947 0.96426 0.92763 0.93955 0.92547 0.98163 0.92764 0.93381 0.91480 0.76397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 8.86 71.98 0.64 -2.67 16 2 C -0.13 -4.49 2.62 -10.72 -0.03 -4.52 16 3 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 4 C 0.15 6.27 5.80 86.36 0.50 6.77 16 5 N -0.61 -31.94 2.99 -699.08 -2.09 -34.03 16 6 C -0.27 -15.16 9.58 84.03 0.81 -14.35 16 7 H 0.07 3.60 7.89 -2.91 -0.02 3.57 16 8 C -0.05 -2.77 4.90 84.86 0.42 -2.35 16 9 N -0.93 -56.03 11.22 21.65 0.24 -55.79 16 10 Si 0.97 45.57 29.59 68.60 2.03 47.60 16 11 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 12 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 13 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 14 C 0.19 9.46 4.59 86.36 0.40 9.86 16 15 C -0.10 -4.25 2.62 -10.72 -0.03 -4.28 16 16 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 17 C -0.13 -4.45 9.04 71.98 0.65 -3.80 16 18 C 0.13 4.49 2.40 30.62 0.07 4.57 16 19 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 20 O -0.57 -16.84 12.54 -148.98 -1.87 -18.71 16 21 H 0.08 1.42 6.76 -2.39 -0.02 1.40 16 22 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 23 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 24 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.05 2.25 7.93 -2.39 -0.02 2.23 16 26 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 27 H 0.06 3.19 6.07 -2.39 -0.01 3.18 16 28 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 29 H 0.05 1.79 8.14 -2.39 -0.02 1.78 16 30 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.07 2.14 7.65 -2.39 -0.02 2.12 16 32 H 0.39 7.66 7.33 -74.06 -0.54 7.11 16 Total: -1.00 -64.73 253.29 2.28 -62.45 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: 0.54 Total: 9.24 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: 3.42 Total: -10.77 kcal Atomic # 7 Polarization: -87.97 SS G_CDS: -1.85 Total: -89.82 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: -1.87 Total: -18.71 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -64.73 2.28 -62.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595747719.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.164 kcal (2) G-P(sol) polarization free energy of solvation -64.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds