Wall clock time and date at job start Mon Mar 30 2020 02:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.50066 * 2 1 4 4 C 1.53196 * 109.49852 * 239.93161 * 2 1 3 5 5 N 1.46928 * 108.89290 * 185.34792 * 4 2 1 6 6 C 1.36935 * 120.62760 * 233.67895 * 5 4 2 7 7 H 1.08007 * 119.99920 * 27.39937 * 6 5 4 8 8 C 1.38804 * 120.00238 * 207.39573 * 6 5 4 9 9 N 1.31624 * 120.00025 * 17.25587 * 8 6 5 10 10 Si 1.86801 * 120.00311 * 197.25673 * 8 6 5 11 11 H 1.48497 * 109.47244 * 60.00150 * 10 8 6 12 12 H 1.48504 * 109.46988 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47113 * 300.00082 * 10 8 6 14 14 C 1.47199 * 118.55471 * 53.54015 * 5 4 2 15 15 C 1.53191 * 108.85509 * 306.47593 * 14 5 4 16 16 H 1.09003 * 109.52054 * 174.62100 * 15 14 5 17 17 C 1.52998 * 109.50096 * 294.70107 * 15 14 5 18 18 C 1.53036 * 109.31342 * 54.65610 * 15 14 5 19 19 O 1.42893 * 109.46264 * 178.61365 * 18 15 14 20 20 H 1.08992 * 109.47417 * 180.02562 * 1 2 3 21 21 H 1.08994 * 109.46823 * 300.07215 * 1 2 3 22 22 H 1.09002 * 109.46289 * 60.06607 * 1 2 3 23 23 H 1.09005 * 109.58454 * 305.20615 * 4 2 1 24 24 H 1.09002 * 109.58413 * 65.48509 * 4 2 1 25 25 H 0.96996 * 120.00327 * 179.97438 * 9 8 6 26 26 H 1.09001 * 109.53153 * 186.67122 * 14 5 4 27 27 H 1.08998 * 109.67815 * 66.36835 * 14 5 4 28 28 H 1.08998 * 109.47612 * 179.83694 * 17 15 14 29 29 H 1.08999 * 109.47043 * 299.84141 * 17 15 14 30 30 H 1.08999 * 109.46604 * 59.83834 * 17 15 14 31 31 H 1.09002 * 109.46201 * 58.65374 * 18 15 14 32 32 H 0.96705 * 114.00248 * 300.06959 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0414 -0.7235 -1.2498 5 7 3.5049 -0.8289 -1.1732 6 6 4.2915 -0.3774 -2.1991 7 1 3.9411 0.4203 -2.8374 8 6 5.5391 -0.9447 -2.4186 9 7 5.8336 -2.1126 -1.8878 10 14 6.8002 -0.0508 -3.4674 11 1 7.1080 1.2669 -2.8559 12 1 8.0416 -0.8619 -3.5476 13 1 6.2534 0.1528 -4.8330 14 6 4.1052 -1.4269 0.0305 15 6 3.5708 -0.6955 1.2659 16 1 3.9333 -1.1899 2.1671 17 6 4.0552 0.7557 1.2496 18 6 2.0408 -0.7235 1.2482 19 8 1.5391 -0.0701 2.4158 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5149 0.8893 22 1 -0.3632 0.5128 -0.8906 23 1 1.6052 -1.7213 -1.2984 24 1 1.7617 -0.1587 -2.1391 25 1 6.7053 -2.5092 -2.0415 26 1 5.1895 -1.3249 -0.0140 27 1 3.8396 -2.4825 0.0874 28 1 3.6724 1.2765 2.1272 29 1 5.1450 0.7751 1.2622 30 1 3.6934 1.2493 0.3476 31 1 1.6966 -1.7576 1.2349 32 1 1.8233 -0.4758 3.2464 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595747720.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:22 Heat of formation + Delta-G solvation = -63.002726 kcal Electronic energy + Delta-G solvation = -13816.573631 eV Core-core repulsion = 11583.347659 eV Total energy + Delta-G solvation = -2233.225972 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.33950 -36.96539 -34.67526 -33.81097 -32.10182 -27.79920 -27.35949 -26.47577 -23.39229 -22.38796 -19.91018 -18.68651 -17.84186 -16.88129 -15.92907 -15.89286 -15.40542 -15.19451 -14.70952 -13.88845 -13.60287 -13.26123 -13.16815 -12.88711 -12.73611 -12.64503 -12.48588 -12.30666 -12.17535 -11.70073 -11.58285 -11.47831 -10.89331 -10.64202 -10.43249 -8.68282 -7.87751 -5.31664 1.46042 1.48341 1.54913 2.50882 3.25238 3.45756 3.65361 3.92979 4.00332 4.23557 4.32909 4.47525 4.67763 4.74596 4.82304 4.89437 4.91442 5.05842 5.12039 5.22096 5.26500 5.40472 5.45057 5.50748 5.58479 5.65282 5.73996 6.38446 6.98242 7.14339 7.85101 8.37595 9.18970 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.049731 B = 0.011637 C = 0.010761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.892908 B = 2405.582026 C = 2601.360201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.096 4.096 3 H 0.063 0.937 4 C 0.149 3.851 5 N -0.606 5.606 6 C -0.260 4.260 7 H 0.065 0.935 8 C -0.048 4.048 9 N -0.935 5.935 10 Si 0.963 3.037 11 H -0.280 1.280 12 H -0.294 1.294 13 H -0.275 1.275 14 C 0.182 3.818 15 C -0.140 4.140 16 H 0.077 0.923 17 C -0.116 4.116 18 C 0.131 3.869 19 O -0.571 6.571 20 H 0.054 0.946 21 H 0.062 0.938 22 H 0.059 0.941 23 H 0.016 0.984 24 H 0.056 0.944 25 H 0.250 0.750 26 H 0.057 0.943 27 H -0.004 1.004 28 H 0.062 0.938 29 H 0.033 0.967 30 H 0.043 0.957 31 H 0.046 0.954 32 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.843 3.305 6.878 10.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.116 4.116 3 H 0.082 0.918 4 C 0.024 3.976 5 N -0.329 5.329 6 C -0.390 4.390 7 H 0.082 0.918 8 C -0.243 4.243 9 N -0.581 5.581 10 Si 0.791 3.209 11 H -0.206 1.206 12 H -0.220 1.220 13 H -0.201 1.201 14 C 0.057 3.943 15 C -0.161 4.161 16 H 0.095 0.905 17 C -0.174 4.174 18 C 0.072 3.928 19 O -0.378 6.378 20 H 0.073 0.927 21 H 0.081 0.919 22 H 0.078 0.922 23 H 0.034 0.966 24 H 0.075 0.925 25 H 0.059 0.941 26 H 0.075 0.925 27 H 0.014 0.986 28 H 0.081 0.919 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -6.975 3.597 6.387 10.119 hybrid contribution 1.302 -0.352 -0.315 1.385 sum -5.673 3.245 6.072 8.921 Atomic orbital electron populations 1.21619 0.93359 1.01821 1.01938 1.21572 0.96630 0.99692 0.93722 0.91846 1.21073 0.83856 0.96785 0.95921 1.44300 1.00767 1.71452 1.16351 1.19434 0.98779 1.12167 1.08602 0.91758 1.25716 1.01541 0.96063 1.01000 1.70167 1.21878 1.16242 1.49821 0.85406 0.78518 0.77941 0.79007 1.20569 1.21993 1.20108 1.20642 0.97798 0.91975 0.83931 1.22354 0.96828 0.97781 0.99088 0.90468 1.21483 0.99136 0.95694 1.01059 1.21527 0.91235 0.94459 0.85590 1.86431 1.75618 1.59405 1.16366 0.92713 0.91875 0.92208 0.96639 0.92510 0.94114 0.92505 0.98640 0.91888 0.94807 0.93832 0.93631 0.76359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.70 9.04 71.98 0.65 -3.05 16 2 C -0.10 -3.39 2.28 -10.71 -0.02 -3.42 16 3 H 0.06 2.42 6.34 -2.39 -0.02 2.40 16 4 C 0.15 6.30 5.79 86.36 0.50 6.80 16 5 N -0.61 -30.61 2.45 -698.38 -1.71 -32.32 16 6 C -0.26 -14.39 9.59 84.03 0.81 -13.58 16 7 H 0.06 3.49 7.89 -2.91 -0.02 3.47 16 8 C -0.05 -2.69 4.92 84.86 0.42 -2.27 16 9 N -0.93 -55.50 11.18 21.65 0.24 -55.26 16 10 Si 0.96 45.19 29.59 68.60 2.03 47.22 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 12 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 13 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 14 C 0.18 8.82 4.72 86.31 0.41 9.23 16 15 C -0.14 -5.24 2.91 -10.72 -0.03 -5.27 16 16 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 17 C -0.12 -4.35 8.57 71.98 0.62 -3.73 16 18 C 0.13 4.37 2.56 30.62 0.08 4.45 16 19 O -0.57 -16.11 11.98 -148.98 -1.79 -17.89 16 20 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 21 H 0.06 1.73 7.65 -2.39 -0.02 1.71 16 22 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 23 H 0.02 0.67 8.14 -2.38 -0.02 0.65 16 24 H 0.06 2.36 7.93 -2.39 -0.02 2.34 16 25 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 26 H 0.06 3.12 6.04 -2.39 -0.01 3.11 16 27 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 28 H 0.06 2.02 7.72 -2.39 -0.02 2.00 16 29 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.04 1.81 5.98 -2.39 -0.01 1.80 16 31 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.39 7.58 9.08 -74.05 -0.67 6.90 16 Total: -1.00 -62.66 250.83 2.62 -60.04 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: 0.42 Total: 9.06 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: 3.42 Total: -10.85 kcal Atomic # 7 Polarization: -86.11 SS G_CDS: -1.47 Total: -87.57 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: -1.79 Total: -17.89 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -62.66 2.62 -60.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595747720.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.962 kcal (2) G-P(sol) polarization free energy of solvation -62.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds