Wall clock time and date at job start Mon Mar 30 2020 02:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.70047 * 2 1 4 4 C 1.52760 * 109.51186 * 239.88741 * 2 1 3 5 5 C 1.53040 * 109.38221 * 185.70592 * 4 2 1 6 6 H 1.09001 * 109.46284 * 301.21051 * 5 4 2 7 7 C 1.53007 * 109.44816 * 181.24985 * 5 4 2 8 8 O 1.42900 * 109.47147 * 174.93838 * 7 5 4 9 9 C 1.53043 * 109.54140 * 61.23858 * 5 4 2 10 10 C 1.53193 * 109.30963 * 298.63474 * 9 5 4 11 11 N 1.46923 * 109.58910 * 120.35564 * 2 1 3 12 12 C 1.36942 * 120.62997 * 353.41990 * 11 2 1 13 13 H 1.07996 * 119.99665 * 29.58632 * 12 11 2 14 14 C 1.38808 * 119.99877 * 209.58916 * 12 11 2 15 15 N 1.31618 * 120.00552 * 15.52077 * 14 12 11 16 16 Si 1.86804 * 119.99669 * 195.52646 * 14 12 11 17 17 H 1.48498 * 109.47155 * 180.02562 * 16 14 12 18 18 H 1.48506 * 109.46909 * 300.00011 * 16 14 12 19 19 H 1.48501 * 109.47361 * 59.99417 * 16 14 12 20 20 H 1.08997 * 109.47177 * 299.64409 * 1 2 3 21 21 H 1.08998 * 109.46969 * 59.64610 * 1 2 3 22 22 H 1.08997 * 109.47304 * 179.64237 * 1 2 3 23 23 H 1.08997 * 109.56594 * 65.66617 * 4 2 1 24 24 H 1.09005 * 109.35800 * 305.61133 * 4 2 1 25 25 H 1.09003 * 109.46960 * 294.93989 * 7 5 4 26 26 H 1.08997 * 109.47096 * 54.93570 * 7 5 4 27 27 H 0.96703 * 113.99814 * 180.02562 * 8 7 5 28 28 H 1.08996 * 109.49796 * 178.68040 * 9 5 4 29 29 H 1.09000 * 109.52406 * 58.60257 * 9 5 4 30 30 H 1.08998 * 109.58588 * 294.84653 * 10 9 5 31 31 H 1.08997 * 109.70252 * 174.49039 * 10 9 5 32 32 H 0.96996 * 120.00275 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0402 -0.7224 -1.2456 5 6 3.5638 -0.8460 -1.1726 6 1 4.0058 0.1477 -1.0996 7 6 4.0795 -1.5416 -2.4341 8 8 5.5084 -1.5522 -2.4219 9 6 3.9524 -1.6685 0.0581 10 6 3.4644 -0.9518 1.3211 11 7 2.0225 -0.6995 1.1944 12 6 1.1536 -1.1135 2.1685 13 1 0.1387 -1.3771 1.9102 14 6 1.5774 -1.1943 3.4879 15 7 2.6899 -0.5972 3.8596 16 14 0.5687 -2.1506 4.7359 17 1 1.2311 -2.0838 6.0633 18 1 -0.7904 -1.5597 4.8311 19 1 0.4631 -3.5679 4.3055 20 1 -0.3633 0.5083 0.8931 21 1 -0.3633 0.5193 -0.8868 22 1 -0.3634 -1.0276 -0.0064 23 1 1.7632 -0.1564 -2.1349 24 1 1.5964 -1.7169 -1.2937 25 1 3.7087 -2.5663 -2.4613 26 1 3.7276 -1.0045 -3.3148 27 1 5.9051 -1.9785 -3.1940 28 1 5.0363 -1.7760 0.0965 29 1 3.4910 -2.6543 -0.0021 30 1 3.9928 -0.0049 1.4310 31 1 3.6506 -1.5776 2.1938 32 1 2.9858 -0.6533 4.7816 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599675741.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:21 Heat of formation + Delta-G solvation = -44.780167 kcal Electronic energy + Delta-G solvation = -13523.988779 eV Core-core repulsion = 11291.552997 eV Total energy + Delta-G solvation = -2232.435782 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.25237 -36.26091 -33.15695 -31.90173 -30.11388 -26.85005 -25.71916 -23.75667 -21.59065 -19.95908 -19.07518 -17.08360 -16.27052 -15.08809 -14.56863 -14.07363 -13.79816 -13.46240 -13.19570 -12.62986 -12.29425 -11.72318 -11.45217 -11.03953 -10.90013 -10.79897 -10.58067 -10.37982 -10.19108 -9.93576 -9.86122 -9.76186 -9.29168 -9.19997 -8.38047 -6.53572 -5.69920 -3.13497 3.42075 3.47883 3.48839 4.49684 4.55562 5.30327 5.40506 5.43404 5.52299 5.66562 5.83971 5.94072 6.07019 6.23286 6.30625 6.43533 6.48597 6.55845 6.69425 6.81707 6.92266 7.00799 7.12085 7.20672 7.49449 7.77975 7.83201 7.88943 8.55443 9.30799 9.95023 10.53223 11.38720 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.045780 B = 0.010815 C = 0.009464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.470492 B = 2588.436285 C = 2957.894682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.169 3.831 3 H 0.023 0.977 4 C -0.121 4.121 5 C -0.080 4.080 6 H 0.067 0.933 7 C 0.080 3.920 8 O -0.571 6.571 9 C -0.130 4.130 10 C 0.172 3.828 11 N -0.588 5.588 12 C -0.249 4.249 13 H 0.068 0.932 14 C 0.001 3.999 15 N -0.904 5.904 16 Si 0.900 3.100 17 H -0.291 1.291 18 H -0.283 1.283 19 H -0.285 1.285 20 H 0.061 0.939 21 H 0.037 0.963 22 H 0.052 0.948 23 H 0.048 0.952 24 H 0.058 0.942 25 H 0.040 0.960 26 H 0.036 0.964 27 H 0.370 0.630 28 H 0.053 0.947 29 H 0.049 0.951 30 H 0.016 0.984 31 H 0.084 0.916 32 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.778 -1.680 -10.728 10.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.062 3.938 3 H 0.041 0.959 4 C -0.161 4.161 5 C -0.099 4.099 6 H 0.086 0.914 7 C 0.003 3.997 8 O -0.376 6.376 9 C -0.169 4.169 10 C 0.046 3.954 11 N -0.312 5.312 12 C -0.379 4.379 13 H 0.086 0.914 14 C -0.197 4.197 15 N -0.548 5.548 16 Si 0.730 3.270 17 H -0.217 1.217 18 H -0.210 1.210 19 H -0.211 1.211 20 H 0.080 0.920 21 H 0.056 0.944 22 H 0.071 0.929 23 H 0.067 0.933 24 H 0.077 0.923 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.215 0.785 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.034 0.966 31 H 0.103 0.897 32 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.733 -1.347 -9.964 10.081 hybrid contribution -0.368 -0.788 0.116 0.878 sum 0.364 -2.135 -9.848 10.083 Atomic orbital electron populations 1.21804 0.96129 1.01247 1.00177 1.20303 0.92784 0.93568 0.87119 0.95946 1.21981 0.94174 1.01066 0.98832 1.21056 0.95589 0.99564 0.93665 0.91418 1.22373 0.80191 0.98991 0.98157 1.86547 1.20418 1.82690 1.47901 1.22150 0.99459 0.98813 0.96523 1.20762 0.83314 0.97050 0.94266 1.44118 1.03066 1.65042 1.18976 1.19133 0.95052 1.37520 0.86206 0.91449 1.25093 0.97942 0.99741 0.96946 1.70020 1.24055 1.44044 1.16692 0.86411 0.79599 0.80246 0.80733 1.21710 1.20967 1.21128 0.92013 0.94411 0.92895 0.93286 0.92308 0.94127 0.94537 0.78496 0.92792 0.93184 0.96578 0.89745 0.93711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 7.94 37.16 0.29 -2.34 16 2 C 0.17 3.64 3.48 -67.83 -0.24 3.40 16 3 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.12 -2.19 4.62 -26.83 -0.12 -2.31 16 5 C -0.08 -1.46 2.39 -90.57 -0.22 -1.68 16 6 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 7 C 0.08 1.19 6.43 37.16 0.24 1.43 16 8 O -0.57 -8.38 13.17 -35.23 -0.46 -8.85 16 9 C -0.13 -2.71 5.27 -26.61 -0.14 -2.85 16 10 C 0.17 4.31 5.29 -3.71 -0.02 4.29 16 11 N -0.59 -15.09 2.99 -165.03 -0.49 -15.58 16 12 C -0.25 -6.88 8.57 -15.06 -0.13 -7.01 16 13 H 0.07 1.81 6.23 -52.49 -0.33 1.48 16 14 C 0.00 0.03 4.94 -17.43 -0.09 -0.05 16 15 N -0.90 -26.84 11.23 55.49 0.62 -26.22 16 16 Si 0.90 22.04 29.58 -169.99 -5.03 17.01 16 17 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 20 H 0.06 1.29 7.62 -51.93 -0.40 0.89 16 21 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.05 1.03 7.44 -51.93 -0.39 0.64 16 23 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 25 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.37 3.40 9.12 45.56 0.42 3.82 16 28 H 0.05 1.09 7.79 -51.93 -0.40 0.69 16 29 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 2.35 6.14 -51.93 -0.32 2.03 16 32 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 253.16 15.07 3.82 3.82 Total: -1.00 -30.87 253.16 -6.32 -37.19 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -4.36 Total: -0.24 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: -0.42 Total: -7.13 kcal Atomic # 7 Polarization: -41.93 SS G_CDS: 0.13 Total: -41.80 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: -0.46 Total: -8.85 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.03 Total: 17.01 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -30.87 -6.32 -37.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599675741.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.591 kcal (2) G-P(sol) polarization free energy of solvation -30.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds