Wall clock time and date at job start Mon Mar 30 2020 02:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.70047 * 2 1 4 4 C 1.52760 * 109.51186 * 239.88741 * 2 1 3 5 5 C 1.53040 * 109.38221 * 185.70592 * 4 2 1 6 6 H 1.09001 * 109.46284 * 301.21051 * 5 4 2 7 7 C 1.53007 * 109.44816 * 181.24985 * 5 4 2 8 8 O 1.42900 * 109.47147 * 174.93838 * 7 5 4 9 9 C 1.53043 * 109.54140 * 61.23858 * 5 4 2 10 10 C 1.53193 * 109.30963 * 298.63474 * 9 5 4 11 11 N 1.46923 * 109.58910 * 120.35564 * 2 1 3 12 12 C 1.36942 * 120.62997 * 353.41990 * 11 2 1 13 13 H 1.07996 * 119.99665 * 29.58632 * 12 11 2 14 14 C 1.38808 * 119.99877 * 209.58916 * 12 11 2 15 15 N 1.31618 * 120.00552 * 15.52077 * 14 12 11 16 16 Si 1.86804 * 119.99669 * 195.52646 * 14 12 11 17 17 H 1.48498 * 109.47155 * 180.02562 * 16 14 12 18 18 H 1.48506 * 109.46909 * 300.00011 * 16 14 12 19 19 H 1.48501 * 109.47361 * 59.99417 * 16 14 12 20 20 H 1.08997 * 109.47177 * 299.64409 * 1 2 3 21 21 H 1.08998 * 109.46969 * 59.64610 * 1 2 3 22 22 H 1.08997 * 109.47304 * 179.64237 * 1 2 3 23 23 H 1.08997 * 109.56594 * 65.66617 * 4 2 1 24 24 H 1.09005 * 109.35800 * 305.61133 * 4 2 1 25 25 H 1.09003 * 109.46960 * 294.93989 * 7 5 4 26 26 H 1.08997 * 109.47096 * 54.93570 * 7 5 4 27 27 H 0.96703 * 113.99814 * 180.02562 * 8 7 5 28 28 H 1.08996 * 109.49796 * 178.68040 * 9 5 4 29 29 H 1.09000 * 109.52406 * 58.60257 * 9 5 4 30 30 H 1.08998 * 109.58588 * 294.84653 * 10 9 5 31 31 H 1.08997 * 109.70252 * 174.49039 * 10 9 5 32 32 H 0.96996 * 120.00275 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0402 -0.7224 -1.2456 5 6 3.5638 -0.8460 -1.1726 6 1 4.0058 0.1477 -1.0996 7 6 4.0795 -1.5416 -2.4341 8 8 5.5084 -1.5522 -2.4219 9 6 3.9524 -1.6685 0.0581 10 6 3.4644 -0.9518 1.3211 11 7 2.0225 -0.6995 1.1944 12 6 1.1536 -1.1135 2.1685 13 1 0.1387 -1.3771 1.9102 14 6 1.5774 -1.1943 3.4879 15 7 2.6899 -0.5972 3.8596 16 14 0.5687 -2.1506 4.7359 17 1 1.2311 -2.0838 6.0633 18 1 -0.7904 -1.5597 4.8311 19 1 0.4631 -3.5679 4.3055 20 1 -0.3633 0.5083 0.8931 21 1 -0.3633 0.5193 -0.8868 22 1 -0.3634 -1.0276 -0.0064 23 1 1.7632 -0.1564 -2.1349 24 1 1.5964 -1.7169 -1.2937 25 1 3.7087 -2.5663 -2.4613 26 1 3.7276 -1.0045 -3.3148 27 1 5.9051 -1.9785 -3.1940 28 1 5.0363 -1.7760 0.0965 29 1 3.4910 -2.6543 -0.0021 30 1 3.9928 -0.0049 1.4310 31 1 3.6506 -1.5776 2.1938 32 1 2.9858 -0.6533 4.7816 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599675741.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:21 Heat of formation + Delta-G solvation = -66.853884 kcal Electronic energy + Delta-G solvation = -13524.945968 eV Core-core repulsion = 11291.552997 eV Total energy + Delta-G solvation = -2233.392971 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.85101 -37.57537 -34.95871 -33.62306 -32.02353 -28.60942 -27.27306 -25.52975 -23.36403 -21.58960 -20.75529 -18.40649 -18.05145 -17.03345 -15.92351 -15.73219 -15.58776 -15.04387 -14.89846 -14.34127 -13.85645 -13.35334 -13.10735 -12.77569 -12.68559 -12.56948 -12.32697 -12.16314 -11.99622 -11.67986 -11.49384 -11.18392 -10.96184 -10.74627 -10.49390 -8.60894 -7.82798 -5.29498 1.46165 1.48863 1.55342 2.52916 3.30386 3.42521 3.65872 3.96116 4.12985 4.27690 4.40279 4.57687 4.66606 4.67582 4.73823 4.83377 4.87188 5.01146 5.09145 5.21398 5.29130 5.39208 5.47301 5.55022 5.58809 5.72370 5.78260 6.44533 7.01677 7.18837 7.91716 8.44983 9.24186 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.045780 B = 0.010815 C = 0.009464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.470492 B = 2588.436285 C = 2957.894682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.155 3.845 3 H 0.008 0.992 4 C -0.109 4.109 5 C -0.081 4.081 6 H 0.052 0.948 7 C 0.089 3.911 8 O -0.593 6.593 9 C -0.116 4.116 10 C 0.178 3.822 11 N -0.606 5.606 12 C -0.252 4.252 13 H 0.076 0.924 14 C -0.058 4.058 15 N -0.941 5.941 16 Si 0.965 3.035 17 H -0.297 1.297 18 H -0.274 1.274 19 H -0.278 1.278 20 H 0.037 0.963 21 H 0.077 0.923 22 H 0.051 0.949 23 H 0.086 0.914 24 H 0.061 0.939 25 H 0.051 0.949 26 H 0.066 0.934 27 H 0.395 0.605 28 H 0.054 0.946 29 H 0.049 0.951 30 H -0.014 1.014 31 H 0.049 0.951 32 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.210 -2.403 -12.967 13.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.050 3.950 3 H 0.026 0.974 4 C -0.148 4.148 5 C -0.100 4.100 6 H 0.071 0.929 7 C 0.012 3.988 8 O -0.402 6.402 9 C -0.155 4.155 10 C 0.052 3.948 11 N -0.330 5.330 12 C -0.382 4.382 13 H 0.094 0.906 14 C -0.253 4.253 15 N -0.588 5.588 16 Si 0.794 3.206 17 H -0.224 1.224 18 H -0.199 1.199 19 H -0.204 1.204 20 H 0.056 0.944 21 H 0.096 0.904 22 H 0.070 0.930 23 H 0.105 0.895 24 H 0.080 0.920 25 H 0.070 0.930 26 H 0.084 0.916 27 H 0.244 0.756 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.004 0.996 31 H 0.067 0.933 32 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -0.264 -2.079 -12.255 12.433 hybrid contribution -0.032 -0.505 0.769 0.921 sum -0.296 -2.584 -11.486 11.777 Atomic orbital electron populations 1.21723 0.94373 1.01416 1.00987 1.20619 0.94387 0.92929 0.87097 0.97381 1.21827 0.93699 1.01184 0.98079 1.21028 0.96044 0.98655 0.94257 0.92930 1.22197 0.80418 0.99445 0.96776 1.86480 1.20435 1.83323 1.49937 1.21928 0.99276 0.98530 0.95778 1.20535 0.83634 0.95340 0.95301 1.44412 1.02866 1.65745 1.19997 1.19515 0.95557 1.36383 0.86758 0.90650 1.25897 0.99266 1.01148 0.98981 1.70198 1.26003 1.45978 1.16586 0.85370 0.78319 0.79030 0.77928 1.22376 1.19923 1.20409 0.94371 0.90417 0.92980 0.89536 0.92010 0.93033 0.91603 0.75594 0.92684 0.93253 0.99572 0.93294 0.94410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.69 7.94 71.98 0.57 -4.12 16 2 C 0.16 6.51 3.48 44.83 0.16 6.66 16 3 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 4 C -0.11 -3.61 4.62 30.53 0.14 -3.47 16 5 C -0.08 -2.79 2.39 -10.76 -0.03 -2.82 16 6 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 7 C 0.09 2.29 6.43 71.98 0.46 2.76 16 8 O -0.59 -15.60 13.17 -148.98 -1.96 -17.56 16 9 C -0.12 -4.80 5.27 30.67 0.16 -4.64 16 10 C 0.18 9.25 5.29 86.36 0.46 9.70 16 11 N -0.61 -31.44 2.99 -676.05 -2.02 -33.46 16 12 C -0.25 -14.02 8.57 84.03 0.72 -13.30 16 13 H 0.08 4.00 6.23 -2.91 -0.02 3.98 16 14 C -0.06 -3.36 4.94 84.86 0.42 -2.94 16 15 N -0.94 -58.04 11.23 21.65 0.24 -57.79 16 16 Si 0.97 45.98 29.58 68.60 2.03 48.01 16 17 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 18 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 19 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 20 H 0.04 1.55 7.62 -2.39 -0.02 1.53 16 21 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 22 H 0.05 1.90 7.44 -2.39 -0.02 1.89 16 23 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 24 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 25 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.39 5.86 9.12 -74.05 -0.68 5.19 16 28 H 0.05 2.23 7.79 -2.39 -0.02 2.21 16 29 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 30 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 31 H 0.05 2.86 6.14 -2.39 -0.01 2.84 16 32 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -68.02 253.16 1.76 -66.26 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: 0.41 Total: 6.71 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: 3.06 Total: -12.15 kcal Atomic # 7 Polarization: -89.48 SS G_CDS: -1.78 Total: -91.26 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -1.96 Total: -17.56 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -68.02 1.76 -66.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599675741.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.598 kcal (2) G-P(sol) polarization free energy of solvation -68.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds