Wall clock time and date at job start Mon Mar 30 2020 02:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.45870 * 2 1 4 4 C 1.53032 * 109.46362 * 119.97683 * 2 1 3 5 5 C 1.53118 * 109.28102 * 179.19113 * 4 2 1 6 6 H 1.08997 * 109.52694 * 182.44483 * 5 4 2 7 7 O 1.42903 * 109.52362 * 62.24591 * 5 4 2 8 8 C 1.53123 * 109.15796 * 302.34504 * 5 4 2 9 9 C 1.53042 * 109.27767 * 57.65017 * 8 5 4 10 10 N 1.46835 * 109.52598 * 300.82388 * 9 8 5 11 11 C 1.46898 * 111.00154 * 185.83713 * 10 9 8 12 12 C 1.50694 * 109.47231 * 300.32629 * 11 10 9 13 13 H 1.08001 * 120.00086 * 354.94441 * 12 11 10 14 14 C 1.37884 * 120.00126 * 174.94114 * 12 11 10 15 15 N 1.31512 * 119.99800 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99921 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47360 * 59.99770 * 16 14 12 18 18 H 1.48502 * 109.46707 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.46915 * 299.99517 * 16 14 12 20 20 H 1.08989 * 109.47520 * 293.46435 * 1 2 3 21 21 H 1.08998 * 109.47238 * 53.46802 * 1 2 3 22 22 H 1.09000 * 109.46817 * 173.46234 * 1 2 3 23 23 H 1.09000 * 109.50474 * 59.24407 * 4 2 1 24 24 H 1.09001 * 109.50600 * 299.12708 * 4 2 1 25 25 H 0.96705 * 113.99558 * 180.31984 * 7 5 4 26 26 H 1.08999 * 109.50666 * 177.59250 * 8 5 4 27 27 H 1.09003 * 109.50080 * 297.71661 * 8 5 4 28 28 H 1.09005 * 109.45873 * 60.84412 * 9 8 5 29 29 H 1.08998 * 109.46106 * 180.80275 * 9 8 5 30 30 H 1.09006 * 109.46946 * 60.32367 * 11 10 9 31 31 H 1.09006 * 109.47490 * 180.32211 * 11 10 9 32 32 H 0.97008 * 119.99510 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7209 1.2498 5 6 3.5710 -0.7362 1.2355 6 1 3.9380 -1.2865 2.1018 7 8 4.0624 0.6051 1.2769 8 6 4.0547 -1.4190 -0.0469 9 6 3.4863 -0.6778 -1.2592 10 7 2.0192 -0.6917 -1.1994 11 6 1.4371 -0.1104 -2.4165 12 6 1.9076 1.3132 -2.5679 13 1 2.5056 1.7696 -1.7930 14 6 1.5746 2.0331 -3.6958 15 7 0.8460 1.4774 -4.6391 16 14 2.1584 3.7975 -3.8837 17 1 3.6428 3.8330 -3.8607 18 1 1.6695 4.3458 -5.1743 19 1 1.6263 4.6167 -2.7652 20 1 -0.3634 0.4091 0.9426 21 1 -0.3633 0.6117 -0.8257 22 1 -0.3633 -1.0210 -0.1170 23 1 1.6658 -1.7447 1.2576 24 1 1.6897 -0.1982 2.1399 25 1 5.0271 0.6710 1.2654 26 1 5.1438 -1.3949 -0.0835 27 1 3.7122 -2.4537 -0.0596 28 1 3.8403 0.3531 -1.2534 29 1 3.8172 -1.1700 -2.1737 30 1 1.7524 -0.6914 -3.2833 31 1 0.3497 -0.1280 -2.3434 32 1 0.6121 1.9838 -5.4328 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606250810.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:19 Heat of formation + Delta-G solvation = -58.514263 kcal Electronic energy + Delta-G solvation = -13679.460472 eV Core-core repulsion = 11446.429135 eV Total energy + Delta-G solvation = -2233.031338 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.92466 -35.84161 -32.82283 -31.60715 -31.00288 -26.83582 -26.05425 -23.55326 -21.66758 -20.53091 -18.93008 -16.67124 -15.85347 -15.24313 -14.58980 -14.45253 -14.28306 -13.73091 -12.81137 -12.55628 -11.94515 -11.59917 -11.37605 -11.32600 -11.18656 -11.01263 -10.67700 -10.55879 -10.31852 -10.17200 -9.77246 -9.70858 -9.50481 -9.10436 -8.34666 -7.03638 -5.95378 -4.03771 3.33236 3.37458 3.41119 4.46667 4.58624 5.08222 5.23187 5.28161 5.34653 5.44136 5.77898 6.01145 6.09223 6.13007 6.28440 6.32475 6.36364 6.44079 6.60096 6.71859 6.93055 7.02348 7.14599 7.40329 7.62953 7.95898 7.98801 8.19157 8.40068 8.44248 9.07745 9.62530 11.09121 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.039228 B = 0.011702 C = 0.010880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.606026 B = 2392.249974 C = 2572.862510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.091 3.909 3 H 0.052 0.948 4 C -0.105 4.105 5 C 0.104 3.896 6 H 0.043 0.957 7 O -0.561 6.561 8 C -0.150 4.150 9 C 0.069 3.931 10 N -0.539 5.539 11 C 0.184 3.816 12 C -0.544 4.544 13 H 0.057 0.943 14 C 0.064 3.936 15 N -0.893 5.893 16 Si 0.887 3.113 17 H -0.278 1.278 18 H -0.287 1.287 19 H -0.277 1.277 20 H 0.042 0.958 21 H 0.068 0.932 22 H 0.051 0.949 23 H 0.074 0.926 24 H 0.061 0.939 25 H 0.369 0.631 26 H 0.056 0.944 27 H 0.071 0.929 28 H 0.044 0.956 29 H 0.061 0.939 30 H 0.030 0.970 31 H 0.034 0.966 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.562 -4.265 9.781 11.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.017 4.017 3 H 0.070 0.930 4 C -0.142 4.142 5 C 0.046 3.954 6 H 0.061 0.939 7 O -0.366 6.366 8 C -0.188 4.188 9 C -0.060 4.060 10 N -0.263 5.263 11 C 0.058 3.942 12 C -0.583 4.583 13 H 0.076 0.924 14 C -0.138 4.138 15 N -0.533 5.533 16 Si 0.715 3.285 17 H -0.204 1.204 18 H -0.213 1.213 19 H -0.203 1.203 20 H 0.061 0.939 21 H 0.087 0.913 22 H 0.070 0.930 23 H 0.093 0.907 24 H 0.079 0.921 25 H 0.215 0.785 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.063 0.937 29 H 0.079 0.921 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.665 -4.596 9.638 11.289 hybrid contribution 1.222 1.720 -0.344 2.138 sum 4.887 -2.876 9.293 10.887 Atomic orbital electron populations 1.21826 0.95487 1.01570 1.00989 1.21259 0.94436 0.96614 0.89438 0.92999 1.21691 0.92569 1.01334 0.98644 1.21836 0.95458 0.82645 0.95490 0.93875 1.86592 1.25551 1.27282 1.97178 1.22341 0.99195 1.00657 0.96592 1.21711 0.89694 0.99008 0.95553 1.62494 1.05755 1.54298 1.03797 1.19799 0.95500 0.92563 0.86321 1.21763 1.33382 0.99022 1.04139 0.92443 1.24957 0.95047 0.98010 0.95826 1.69941 1.37605 1.36994 1.08712 0.86730 0.79121 0.85387 0.77220 1.20355 1.21317 1.20286 0.93921 0.91281 0.93029 0.90706 0.92060 0.78494 0.92490 0.91070 0.93739 0.92058 0.95161 0.94791 0.92900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 8.54 37.16 0.32 -2.40 16 2 C 0.09 1.87 1.96 -67.72 -0.13 1.73 16 3 H 0.05 1.23 6.46 -51.93 -0.34 0.89 16 4 C -0.10 -1.73 5.10 -26.65 -0.14 -1.87 16 5 C 0.10 1.59 3.80 -26.61 -0.10 1.49 16 6 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 7 O -0.56 -9.05 12.18 -35.23 -0.43 -9.48 16 8 C -0.15 -2.33 5.79 -26.65 -0.15 -2.48 16 9 C 0.07 1.40 4.90 -3.84 -0.02 1.38 16 10 N -0.54 -11.90 4.69 -228.13 -1.07 -12.97 16 11 C 0.18 4.82 4.72 -4.98 -0.02 4.80 16 12 C -0.54 -15.30 7.72 -34.44 -0.27 -15.56 16 13 H 0.06 1.64 5.86 -52.49 -0.31 1.33 16 14 C 0.06 1.82 5.46 -17.82 -0.10 1.73 16 15 N -0.89 -26.66 13.29 55.43 0.74 -25.93 16 16 Si 0.89 21.99 29.54 -169.99 -5.02 16.96 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 H 0.04 0.71 8.14 -51.94 -0.42 0.29 16 21 H 0.07 1.51 6.63 -51.93 -0.34 1.17 16 22 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 24 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.37 4.30 9.08 45.56 0.41 4.71 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.04 1.00 6.37 -51.93 -0.33 0.67 16 29 H 0.06 1.26 8.12 -51.93 -0.42 0.84 16 30 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.03 0.94 6.09 -51.93 -0.32 0.62 16 32 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 251.05 15.07 3.78 3.78 Total: -1.00 -30.58 251.05 -6.77 -37.35 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -4.16 Total: 1.46 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: -0.61 Total: -11.19 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: -0.33 Total: -38.89 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: -0.43 Total: -9.48 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -30.58 -6.77 -37.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606250810.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.162 kcal (2) G-P(sol) polarization free energy of solvation -30.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds