Wall clock time and date at job start Mon Mar 30 2020 02:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.45870 * 2 1 4 4 C 1.53032 * 109.46362 * 119.97683 * 2 1 3 5 5 C 1.53118 * 109.28102 * 179.19113 * 4 2 1 6 6 H 1.08997 * 109.52694 * 182.44483 * 5 4 2 7 7 O 1.42903 * 109.52362 * 62.24591 * 5 4 2 8 8 C 1.53123 * 109.15796 * 302.34504 * 5 4 2 9 9 C 1.53042 * 109.27767 * 57.65017 * 8 5 4 10 10 N 1.46835 * 109.52598 * 300.82388 * 9 8 5 11 11 C 1.46898 * 111.00154 * 185.83713 * 10 9 8 12 12 C 1.50694 * 109.47231 * 300.32629 * 11 10 9 13 13 H 1.08001 * 120.00086 * 354.94441 * 12 11 10 14 14 C 1.37884 * 120.00126 * 174.94114 * 12 11 10 15 15 N 1.31512 * 119.99800 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99921 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47360 * 59.99770 * 16 14 12 18 18 H 1.48502 * 109.46707 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.46915 * 299.99517 * 16 14 12 20 20 H 1.08989 * 109.47520 * 293.46435 * 1 2 3 21 21 H 1.08998 * 109.47238 * 53.46802 * 1 2 3 22 22 H 1.09000 * 109.46817 * 173.46234 * 1 2 3 23 23 H 1.09000 * 109.50474 * 59.24407 * 4 2 1 24 24 H 1.09001 * 109.50600 * 299.12708 * 4 2 1 25 25 H 0.96705 * 113.99558 * 180.31984 * 7 5 4 26 26 H 1.08999 * 109.50666 * 177.59250 * 8 5 4 27 27 H 1.09003 * 109.50080 * 297.71661 * 8 5 4 28 28 H 1.09005 * 109.45873 * 60.84412 * 9 8 5 29 29 H 1.08998 * 109.46106 * 180.80275 * 9 8 5 30 30 H 1.09006 * 109.46946 * 60.32367 * 11 10 9 31 31 H 1.09006 * 109.47490 * 180.32211 * 11 10 9 32 32 H 0.97008 * 119.99510 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7209 1.2498 5 6 3.5710 -0.7362 1.2355 6 1 3.9380 -1.2865 2.1018 7 8 4.0624 0.6051 1.2769 8 6 4.0547 -1.4190 -0.0469 9 6 3.4863 -0.6778 -1.2592 10 7 2.0192 -0.6917 -1.1994 11 6 1.4371 -0.1104 -2.4165 12 6 1.9076 1.3132 -2.5679 13 1 2.5056 1.7696 -1.7930 14 6 1.5746 2.0331 -3.6958 15 7 0.8460 1.4774 -4.6391 16 14 2.1584 3.7975 -3.8837 17 1 3.6428 3.8330 -3.8607 18 1 1.6695 4.3458 -5.1743 19 1 1.6263 4.6167 -2.7652 20 1 -0.3634 0.4091 0.9426 21 1 -0.3633 0.6117 -0.8257 22 1 -0.3633 -1.0210 -0.1170 23 1 1.6658 -1.7447 1.2576 24 1 1.6897 -0.1982 2.1399 25 1 5.0271 0.6710 1.2654 26 1 5.1438 -1.3949 -0.0835 27 1 3.7122 -2.4537 -0.0596 28 1 3.8403 0.3531 -1.2534 29 1 3.8172 -1.1700 -2.1737 30 1 1.7524 -0.6914 -3.2833 31 1 0.3497 -0.1280 -2.3434 32 1 0.6121 1.9838 -5.4328 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606250810.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:19 Heat of formation + Delta-G solvation = -82.211739 kcal Electronic energy + Delta-G solvation = -13680.488072 eV Core-core repulsion = 11446.429135 eV Total energy + Delta-G solvation = -2234.058937 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.41147 -37.30745 -34.85560 -33.13117 -32.63568 -28.63258 -27.75734 -25.40398 -23.34430 -22.01563 -20.54066 -18.49338 -17.41044 -16.95393 -16.34933 -16.09067 -15.67197 -15.41773 -14.58166 -14.27076 -13.53984 -13.18154 -13.09410 -12.98355 -12.84277 -12.63152 -12.43818 -12.29834 -12.02830 -11.79327 -11.69549 -11.60222 -10.99276 -10.58211 -10.49686 -8.94835 -8.13589 -6.33144 1.33852 1.35574 1.43971 2.36591 3.09211 3.33959 3.58855 3.92697 4.02589 4.18765 4.34169 4.56431 4.65818 4.72051 4.83482 4.94270 4.97504 5.05985 5.08724 5.23714 5.29696 5.34764 5.40322 5.43689 5.53433 5.78456 6.11480 6.33035 6.65679 6.88964 7.00273 7.37494 8.87288 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.039228 B = 0.011702 C = 0.010880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.606026 B = 2392.249974 C = 2572.862510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.090 3.910 3 H 0.014 0.986 4 C -0.102 4.102 5 C 0.104 3.896 6 H 0.084 0.916 7 O -0.586 6.586 8 C -0.139 4.139 9 C 0.067 3.933 10 N -0.535 5.535 11 C 0.196 3.804 12 C -0.550 4.550 13 H 0.049 0.951 14 C 0.011 3.989 15 N -0.926 5.926 16 Si 0.954 3.046 17 H -0.271 1.271 18 H -0.279 1.279 19 H -0.273 1.273 20 H 0.070 0.930 21 H 0.031 0.969 22 H 0.061 0.939 23 H 0.092 0.908 24 H 0.075 0.925 25 H 0.388 0.612 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.016 0.984 29 H 0.047 0.953 30 H 0.000 1.000 31 H 0.015 0.985 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.624 -4.492 11.623 13.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.019 4.019 3 H 0.032 0.968 4 C -0.140 4.140 5 C 0.046 3.954 6 H 0.102 0.898 7 O -0.394 6.394 8 C -0.177 4.177 9 C -0.062 4.062 10 N -0.259 5.259 11 C 0.070 3.930 12 C -0.589 4.589 13 H 0.067 0.933 14 C -0.188 4.188 15 N -0.566 5.566 16 Si 0.779 3.221 17 H -0.196 1.196 18 H -0.204 1.204 19 H -0.198 1.198 20 H 0.089 0.911 21 H 0.050 0.950 22 H 0.080 0.920 23 H 0.110 0.890 24 H 0.094 0.906 25 H 0.236 0.764 26 H 0.104 0.896 27 H 0.101 0.899 28 H 0.034 0.966 29 H 0.066 0.934 30 H 0.018 0.982 31 H 0.033 0.967 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.749 -4.830 11.497 13.344 hybrid contribution 0.889 1.768 -0.911 2.178 sum 5.637 -3.062 10.586 12.378 Atomic orbital electron populations 1.21772 0.94991 1.01613 1.00973 1.21328 0.94985 0.95062 0.90501 0.96823 1.21699 0.94036 1.01776 0.96443 1.21925 0.94368 0.82651 0.96491 0.89795 1.86556 1.27518 1.28060 1.97224 1.22295 1.00751 1.00370 0.94270 1.21768 0.88452 0.98089 0.97865 1.62477 1.06980 1.53634 1.02843 1.19458 0.94472 0.91658 0.87437 1.21919 1.33093 0.99925 1.03981 0.93306 1.25783 0.95156 1.02328 0.95513 1.70056 1.38623 1.38698 1.09236 0.85680 0.78841 0.80148 0.77454 1.19612 1.20397 1.19832 0.91075 0.94998 0.92003 0.88982 0.90630 0.76357 0.89583 0.89852 0.96553 0.93401 0.98226 0.96689 0.92661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.22 8.54 71.98 0.61 -4.60 16 2 C 0.09 3.64 1.96 44.94 0.09 3.73 16 3 H 0.01 0.66 6.46 -2.39 -0.02 0.64 16 4 C -0.10 -3.08 5.10 30.64 0.16 -2.92 16 5 C 0.10 2.78 3.80 30.67 0.12 2.90 16 6 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 7 O -0.59 -17.44 12.18 -148.98 -1.81 -19.25 16 8 C -0.14 -3.91 5.79 30.65 0.18 -3.74 16 9 C 0.07 2.70 4.90 86.33 0.42 3.12 16 10 N -0.54 -23.92 4.69 -875.68 -4.11 -28.03 16 11 C 0.20 10.77 4.72 85.56 0.40 11.18 16 12 C -0.55 -31.97 7.72 25.60 0.20 -31.77 16 13 H 0.05 2.88 5.86 -2.91 -0.02 2.86 16 14 C 0.01 0.66 5.46 84.66 0.46 1.12 16 15 N -0.93 -56.64 13.29 21.45 0.28 -56.35 16 16 Si 0.95 45.70 29.54 68.60 2.03 47.73 16 17 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 18 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 19 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 20 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 21 H 0.03 1.43 6.63 -2.39 -0.02 1.41 16 22 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 23 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 24 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 25 H 0.39 7.94 9.08 -74.05 -0.67 7.27 16 26 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.02 0.74 6.37 -2.38 -0.02 0.73 16 29 H 0.05 2.01 8.12 -2.39 -0.02 1.99 16 30 H 0.00 -0.02 8.14 -2.38 -0.02 -0.04 16 31 H 0.02 0.87 6.09 -2.38 -0.01 0.86 16 32 H 0.26 15.24 8.31 -92.70 -0.77 14.47 16 Total: -1.00 -67.63 251.05 -0.55 -68.18 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: 0.42 Total: 8.72 kcal Atomic # 6 Polarization: -23.63 SS G_CDS: 2.64 Total: -20.99 kcal Atomic # 7 Polarization: -80.56 SS G_CDS: -3.82 Total: -84.38 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: -1.81 Total: -19.25 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -67.63 -0.55 -68.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606250810.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.035 kcal (2) G-P(sol) polarization free energy of solvation -67.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds